Wall clock time and date at job start Tue Mar 31 2020 14:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.48177 * 2 1 4 4 C 1.53088 * 109.48368 * 239.96412 * 2 1 3 5 5 C 1.53180 * 109.16093 * 297.62593 * 4 2 1 6 6 C 1.53165 * 109.03895 * 303.01818 * 5 4 2 7 7 C 1.53095 * 109.16412 * 56.98026 * 6 5 4 8 8 H 1.08996 * 109.48791 * 62.37980 * 7 6 5 9 9 C 1.53003 * 109.48223 * 182.41062 * 7 6 5 10 10 N 1.46497 * 109.47489 * 184.94311 * 9 7 6 11 11 C 1.34767 * 120.00358 * 180.02562 * 10 9 7 12 12 O 1.21760 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.46238 * 120.00241 * 179.97438 * 11 10 9 14 14 S 1.75665 * 125.22796 * 0.02562 * 13 11 10 15 15 C 1.75466 * 92.09446 * 179.73564 * 14 13 11 16 16 C 1.32762 * 111.36470 * 359.97438 * 15 14 13 17 17 C 1.39549 * 125.22973 * 179.71554 * 13 11 10 18 18 C 1.40534 * 123.71661 * 0.24151 * 17 13 11 19 19 H 1.08004 * 119.99829 * 336.49623 * 18 17 13 20 20 C 1.40308 * 120.00384 * 156.49801 * 18 17 13 21 21 N 1.30640 * 119.99601 * 350.15049 * 20 18 17 22 22 Si 1.86793 * 120.00188 * 170.15301 * 20 18 17 23 23 H 1.48497 * 109.47262 * 89.99985 * 22 20 18 24 24 H 1.48497 * 109.47161 * 209.99849 * 22 20 18 25 25 H 1.48497 * 109.47330 * 329.99890 * 22 20 18 26 26 O 1.42904 * 109.41545 * 302.39011 * 7 6 5 27 27 H 1.09000 * 109.46788 * 299.98121 * 1 2 3 28 28 H 1.08998 * 109.46692 * 59.97699 * 1 2 3 29 29 H 1.08998 * 109.46851 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47109 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46871 * 300.02161 * 3 2 1 32 32 H 1.09003 * 109.46901 * 60.02266 * 3 2 1 33 33 H 1.09002 * 109.51916 * 57.52995 * 4 2 1 34 34 H 1.08996 * 109.52705 * 177.71886 * 4 2 1 35 35 H 1.09009 * 109.54195 * 62.89020 * 5 4 2 36 36 H 1.09004 * 109.54185 * 183.05507 * 5 4 2 37 37 H 1.09009 * 109.52301 * 297.07593 * 6 5 4 38 38 H 1.09001 * 109.52636 * 176.88861 * 6 5 4 39 39 H 1.09005 * 109.46984 * 64.94297 * 9 7 6 40 40 H 1.09000 * 109.47322 * 304.94583 * 9 7 6 41 41 H 0.97001 * 119.99353 * 359.97438 * 10 9 7 42 42 H 1.08005 * 124.31931 * 180.02562 * 15 14 13 43 43 H 1.07997 * 122.78770 * 180.02562 * 16 15 14 44 44 H 0.96994 * 119.99895 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 1.5758 -2.1815 -1.2118 6 6 2.0765 -2.8322 0.0812 7 6 1.5645 -2.0283 1.2793 8 1 0.4750 -2.0548 1.2962 9 6 2.1099 -2.6369 2.5728 10 7 1.5270 -1.9420 3.7233 11 6 1.8648 -2.3102 4.9749 12 8 2.6540 -3.2208 5.1496 13 6 1.2834 -1.6162 6.1233 14 16 0.1354 -0.2898 6.0308 15 6 0.0431 -0.1628 7.7784 16 6 0.8234 -1.0591 8.3703 17 6 1.5506 -1.9098 7.4611 18 6 2.4307 -2.9236 7.8765 19 1 2.6476 -3.7530 7.2196 20 6 3.0275 -2.8585 9.1447 21 7 2.9218 -1.7712 9.8612 22 14 3.9733 -4.3262 9.8084 23 1 5.3987 -4.2197 9.4059 24 1 3.8776 -4.3477 11.2901 25 1 3.3954 -5.5780 9.2569 26 8 2.0066 -0.6740 1.1666 27 1 -0.3633 0.5136 0.8902 28 1 -0.3632 0.5142 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1302 1.4422 -0.0005 31 1 1.6767 1.9564 -0.8898 32 1 1.6774 1.9562 0.8902 33 1 1.6421 -0.2360 -2.1398 34 1 3.1298 -0.6875 -1.2708 35 1 0.4867 -2.2181 -1.2405 36 1 1.9813 -2.7156 -2.0712 37 1 3.1665 -2.8400 0.0868 38 1 1.7037 -3.8546 0.1426 39 1 3.1945 -2.5305 2.5954 40 1 1.8476 -3.6940 2.6158 41 1 0.8986 -1.2164 3.5841 42 1 -0.5708 0.5526 8.3054 43 1 0.9068 -1.1439 9.4437 44 1 3.3347 -1.7260 10.7377 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890120275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:38 Heat of formation + Delta-G solvation = -100.672679 kcal Electronic energy + Delta-G solvation = -25316.888540 eV Core-core repulsion = 21744.755572 eV Total energy + Delta-G solvation = -3572.132969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15465 -39.98890 -37.89357 -36.06489 -34.91229 -34.59968 -34.00889 -31.03334 -30.12626 -28.40769 -28.11229 -26.59904 -24.17346 -23.22792 -22.71835 -21.69938 -20.63110 -20.17994 -19.34160 -17.67527 -17.48117 -17.26433 -16.62574 -16.43719 -16.05490 -15.91014 -15.60228 -15.39590 -14.98731 -14.52115 -14.21984 -14.05255 -13.96283 -13.74420 -13.62326 -13.53585 -13.19369 -13.03702 -12.93573 -12.91022 -12.77159 -12.72673 -12.53138 -12.08208 -12.04846 -12.01953 -11.85708 -11.65754 -11.42359 -11.07054 -10.99093 -10.44516 -10.21692 -9.94144 -9.34694 -8.94419 -8.85864 -6.45655 0.30918 1.33196 1.34526 1.37039 1.48366 1.78624 1.97679 2.17509 2.50190 2.57484 2.68332 3.31853 3.67987 3.83583 3.85843 3.93719 4.08316 4.12969 4.32316 4.37043 4.37146 4.49838 4.63923 4.67982 4.70441 4.81160 4.89533 4.90723 4.97657 5.02047 5.02782 5.05573 5.13690 5.15267 5.25154 5.27943 5.37176 5.39129 5.50863 5.57062 5.72586 5.84316 6.39557 6.40744 6.57588 6.72090 6.96981 7.73183 8.07797 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.003302 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.311245 B = 8477.377701 C = 9516.796278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.099 3.901 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.118 4.118 6 C -0.145 4.145 7 C 0.089 3.911 8 H 0.073 0.927 9 C 0.135 3.865 10 N -0.731 5.731 11 C 0.589 3.411 12 O -0.606 6.606 13 C -0.468 4.468 14 S 0.006 5.994 15 C -0.192 4.192 16 C -0.128 4.128 17 C 0.112 3.888 18 C -0.418 4.418 19 H 0.084 0.916 20 C 0.035 3.965 21 N -0.794 5.794 22 Si 0.991 3.009 23 H -0.265 1.265 24 H -0.247 1.247 25 H -0.264 1.264 26 O -0.391 6.391 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.399 0.601 42 H 0.178 0.822 43 H 0.142 0.858 44 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.933 3.397 -16.905 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.061 3.939 3 C -0.195 4.195 4 C -0.176 4.176 5 C -0.155 4.155 6 C -0.183 4.183 7 C 0.031 3.969 8 H 0.091 0.909 9 C 0.011 3.989 10 N -0.383 5.383 11 C 0.386 3.614 12 O -0.492 6.492 13 C -0.587 4.587 14 S 0.262 5.738 15 C -0.326 4.326 16 C -0.161 4.161 17 C 0.101 3.899 18 C -0.449 4.449 19 H 0.102 0.898 20 C -0.185 4.185 21 N -0.418 5.418 22 Si 0.810 3.190 23 H -0.190 1.190 24 H -0.170 1.170 25 H -0.188 1.188 26 O -0.312 6.312 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.233 0.767 42 H 0.195 0.805 43 H 0.160 0.840 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.889 3.759 -17.637 18.684 hybrid contribution 0.862 -0.962 1.555 2.022 sum -4.026 2.797 -16.082 16.813 Atomic orbital electron populations 1.22452 0.94879 1.02876 1.03292 1.21763 0.93955 0.93043 0.85186 1.21788 1.01439 0.93186 1.03051 1.22169 1.01361 0.96185 0.97924 1.21628 1.01671 0.95357 0.96859 1.22123 1.01819 1.00041 0.94366 1.22227 0.98472 0.82860 0.93332 0.90899 1.21277 0.97686 0.96011 0.83884 1.45557 1.49039 1.39053 1.04613 1.17058 0.80038 0.81915 0.82396 1.90603 1.38797 1.33730 1.86095 1.23064 1.24536 1.15441 0.95659 1.82338 1.49292 1.37037 1.05140 1.25456 1.05640 1.04629 0.96834 1.21617 0.96654 0.96811 1.00996 1.18390 0.90893 0.91020 0.89603 1.20031 1.19407 1.06044 0.99407 0.89803 1.27070 0.96080 0.99964 0.95373 1.69649 1.33213 1.27365 1.11571 0.85072 0.78252 0.77283 0.78368 1.19014 1.17009 1.18768 1.88036 1.74144 1.24368 1.44646 0.92821 0.89458 0.91778 0.92721 0.88721 0.92912 0.88829 0.91923 0.90602 0.89793 0.91587 0.89494 0.93624 0.90861 0.76660 0.80504 0.84023 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 7.93 71.98 0.57 -2.50 16 2 C 0.10 2.00 1.11 -10.76 -0.01 1.99 16 3 C -0.14 -2.57 8.85 71.98 0.64 -1.93 16 4 C -0.14 -2.20 4.92 30.68 0.15 -2.05 16 5 C -0.12 -1.77 5.72 30.71 0.18 -1.59 16 6 C -0.15 -2.92 5.42 30.68 0.17 -2.75 16 7 C 0.09 2.33 2.35 30.63 0.07 2.40 16 8 H 0.07 1.78 6.34 -2.39 -0.02 1.77 16 9 C 0.14 4.76 5.34 86.38 0.46 5.22 16 10 N -0.73 -30.78 5.50 -467.48 -2.57 -33.35 16 11 C 0.59 31.24 7.76 86.32 0.67 31.91 16 12 O -0.61 -36.04 14.45 -4.54 -0.07 -36.10 16 13 C -0.47 -25.11 6.51 24.67 0.16 -24.95 16 14 S 0.01 0.27 22.25 -56.49 -1.26 -0.99 16 15 C -0.19 -8.22 11.07 66.64 0.74 -7.48 16 16 C -0.13 -6.42 9.04 22.61 0.20 -6.21 16 17 C 0.11 6.34 5.68 -20.89 -0.12 6.22 16 18 C -0.42 -24.15 8.52 23.33 0.20 -23.95 16 19 H 0.08 5.18 6.04 -2.91 -0.02 5.16 16 20 C 0.04 1.78 5.39 85.37 0.46 2.24 16 21 N -0.79 -39.34 10.82 21.89 0.24 -39.10 16 22 Si 0.99 39.23 29.57 68.60 2.03 41.26 16 23 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.25 -8.59 7.11 99.48 0.71 -7.89 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 O -0.39 -11.10 9.82 -148.98 -1.46 -12.56 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.08 4.97 -2.39 -0.01 1.07 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.01 6.62 -2.38 -0.02 1.00 16 36 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 41 H 0.40 15.52 7.55 -92.71 -0.70 14.82 16 42 H 0.18 6.04 8.06 -2.91 -0.02 6.02 16 43 H 0.14 7.04 6.40 -2.91 -0.02 7.02 16 44 H 0.30 13.08 8.29 -92.71 -0.77 12.31 16 Total: -1.00 -68.69 361.31 1.76 -66.93 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: 0.32 Total: 37.35 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 4.54 Total: -23.44 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -2.33 Total: -72.45 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -1.53 Total: -48.67 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -1.26 Total: -0.99 kcal Total: -68.69 1.76 -66.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890120275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.741 kcal (2) G-P(sol) polarization free energy of solvation -68.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds