Wall clock time and date at job start Tue Mar 31 2020 13:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86802 * 119.99880 * 2 1 4 4 H 1.48508 * 109.47153 * 269.99777 * 3 2 1 5 5 H 1.48497 * 109.47070 * 29.99745 * 3 2 1 6 6 H 1.48505 * 109.47377 * 149.99617 * 3 2 1 7 7 C 1.38658 * 120.00582 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99358 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00538 * 180.02562 * 7 2 1 10 10 C 1.35741 * 117.00141 * 185.05813 * 9 7 2 11 11 C 1.38906 * 120.07061 * 354.46326 * 10 9 7 12 12 C 1.38080 * 119.93170 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.06651 * 0.02562 * 12 11 10 14 14 C 1.38279 * 120.14212 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.96555 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.46574 * 90.00134 * 15 14 13 17 17 O 1.21286 * 120.00309 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99867 * 179.97438 * 16 15 14 19 19 C 1.46925 * 120.62756 * 359.72182 * 18 16 15 20 20 C 1.52764 * 109.00723 * 233.58265 * 19 18 16 21 21 C 1.53043 * 109.38311 * 305.59014 * 20 19 18 22 22 H 1.08999 * 109.46173 * 301.22097 * 21 20 19 23 23 O 1.42898 * 109.44606 * 181.25177 * 21 20 19 24 24 C 1.53039 * 109.53865 * 61.24132 * 21 20 19 25 25 H 1.09002 * 109.49965 * 58.58251 * 24 21 20 26 26 F 1.39899 * 109.49757 * 178.68213 * 24 21 20 27 27 C 1.46925 * 120.63022 * 180.02562 * 18 16 15 28 28 C 1.38121 * 120.06626 * 0.27709 * 14 13 12 29 29 H 0.96995 * 120.00169 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.03314 * 0.03027 * 11 10 9 31 31 H 1.07996 * 119.96057 * 179.97438 * 12 11 10 32 32 H 1.08005 * 119.92359 * 180.02562 * 13 12 11 33 33 H 1.08996 * 109.46911 * 210.00338 * 15 14 13 34 34 H 1.08996 * 109.47048 * 330.00592 * 15 14 13 35 35 H 1.08996 * 109.58650 * 353.42046 * 19 18 16 36 36 H 1.09003 * 109.58330 * 113.84527 * 19 18 16 37 37 H 1.09000 * 109.56279 * 185.55696 * 20 19 18 38 38 H 1.09000 * 109.38453 * 65.51845 * 20 19 18 39 39 H 0.96699 * 113.99603 * 59.94414 * 23 21 20 40 40 H 1.08997 * 109.58241 * 246.15448 * 27 18 16 41 41 H 1.08994 * 109.58864 * 6.43813 * 27 18 16 42 42 H 1.07996 * 120.03439 * 179.70692 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0090 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2007 0.0011 10 6 3.9736 -2.4055 -0.1051 11 6 3.2235 -3.5745 -0.0921 12 6 3.8534 -4.7985 -0.2008 13 6 5.2299 -4.8612 -0.3219 14 6 5.9794 -3.6992 -0.3351 15 6 7.4789 -3.7722 -0.4667 16 6 7.8575 -3.7344 -1.9248 17 8 6.9947 -3.6555 -2.7736 18 7 9.1550 -3.7873 -2.2857 19 6 10.2118 -3.8757 -1.2688 20 6 11.2223 -2.7541 -1.5025 21 6 11.7301 -2.8202 -2.9447 22 1 12.1900 -3.7921 -3.1236 23 8 12.6970 -1.7896 -3.1563 24 6 10.5581 -2.6256 -3.9094 25 1 10.0822 -1.6645 -3.7146 26 9 11.0277 -2.6562 -5.2269 27 6 9.5398 -3.7509 -3.7032 28 6 5.3557 -2.4721 -0.2216 29 1 -0.4850 0.8400 -0.0004 30 1 2.1487 -3.5262 0.0019 31 1 3.2707 -5.7077 -0.1904 32 1 5.7201 -5.8198 -0.4072 33 1 7.9304 -2.9242 0.0481 34 1 7.8379 -4.7003 -0.0220 35 1 9.7737 -3.7701 -0.2764 36 1 10.7151 -4.8394 -1.3477 37 1 12.0609 -2.8695 -0.8159 38 1 10.7406 -1.7916 -1.3301 39 1 13.4695 -1.8503 -2.5778 40 1 9.9871 -4.7041 -3.9850 41 1 8.6581 -3.5655 -4.3166 42 1 5.9420 -1.5652 -0.2272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890693815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:10 Heat of formation + Delta-G solvation = -131.790069 kcal Electronic energy + Delta-G solvation = -26931.033384 eV Core-core repulsion = 22791.337888 eV Total energy + Delta-G solvation = -4139.695496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.96321 -40.52460 -39.15409 -38.27735 -36.71737 -36.07190 -32.67276 -32.32519 -31.75553 -31.01254 -29.42549 -27.34363 -25.33487 -24.97718 -23.75844 -22.01758 -21.58854 -20.74585 -19.37170 -18.11323 -17.71228 -17.39346 -17.14998 -16.44853 -16.24012 -16.18187 -15.59792 -15.20602 -14.86366 -14.68993 -14.25902 -14.18616 -13.89742 -13.86828 -13.69049 -13.49535 -13.18718 -12.79792 -12.61792 -12.44916 -12.27226 -12.17791 -12.13157 -11.77236 -11.51539 -11.30909 -10.88351 -10.82576 -10.75735 -10.73329 -10.55823 -10.14531 -9.90779 -9.37510 -9.08447 -8.85064 -8.15471 -7.35127 -6.38852 -4.05658 1.97011 2.28425 2.50632 2.63318 3.23554 3.28180 3.41503 3.43767 3.91009 3.97607 4.18921 4.26018 4.35800 4.39402 4.53599 4.65245 4.67889 4.77215 4.95598 4.97386 5.05835 5.08594 5.11932 5.18843 5.25396 5.31666 5.45208 5.50439 5.63447 5.66963 5.83179 6.08281 6.12706 6.25349 6.52303 6.78407 7.03617 7.05268 7.09579 7.20810 7.32451 7.61396 7.82648 8.04223 8.06497 8.96629 9.59136 10.69008 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015785 B = 0.002882 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.406147 B = 9712.763538 C =10648.000345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.161 3.839 11 C -0.217 4.217 12 C -0.075 4.075 13 C -0.188 4.188 14 C -0.038 4.038 15 C -0.091 4.091 16 C 0.518 3.482 17 O -0.510 6.510 18 N -0.622 5.622 19 C 0.107 3.893 20 C -0.169 4.169 21 C 0.082 3.918 22 H 0.069 0.931 23 O -0.558 6.558 24 C 0.089 3.911 25 H 0.094 0.906 26 F -0.199 7.199 27 C 0.091 3.909 28 C -0.175 4.175 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.382 0.618 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.802 -9.209 -0.684 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.124 6.124 10 C 0.109 3.891 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.207 4.207 14 C -0.039 4.039 15 C -0.130 4.130 16 C 0.307 3.693 17 O -0.382 6.382 18 N -0.359 5.359 19 C -0.016 4.016 20 C -0.207 4.207 21 C 0.022 3.978 22 H 0.087 0.913 23 O -0.364 6.364 24 C 0.051 3.949 25 H 0.112 0.888 26 F -0.180 7.180 27 C -0.032 4.032 28 C -0.194 4.194 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.230 0.770 40 H 0.098 0.902 41 H 0.130 0.870 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 24.741 -8.611 -1.605 26.246 hybrid contribution 0.656 0.481 0.338 0.881 sum 25.397 -8.131 -1.267 26.697 Atomic orbital electron populations 1.69643 1.05551 1.28437 1.48282 1.24453 0.95011 0.98778 0.95730 0.86192 0.80278 0.81496 0.78988 1.19878 1.20794 1.18418 1.20764 0.76885 0.96628 1.52155 0.87636 1.83562 1.22607 1.25642 1.80601 1.18999 0.91487 0.85573 0.93060 1.21311 1.01151 0.91950 1.09156 1.20740 0.94091 0.96765 0.97778 1.20407 0.93967 0.96437 1.09867 1.18645 0.92070 0.93099 1.00050 1.20620 0.95302 1.04487 0.92637 1.20876 0.81052 0.75412 0.91957 1.90782 1.48003 1.46819 1.52626 1.48098 1.06298 1.75569 1.05925 1.21677 0.88688 0.98519 0.92755 1.22616 1.00328 1.01090 0.96706 1.22365 0.89605 0.91729 0.94092 0.91306 1.86583 1.33763 1.51757 1.64271 1.21910 0.93584 1.01824 0.77560 0.88790 1.92841 1.89891 1.97864 1.37378 1.22026 0.99469 0.97854 0.83885 1.19924 0.92051 0.96873 1.10563 0.91086 0.84955 0.87131 0.87730 0.88144 0.88118 0.88342 0.90711 0.89266 0.89831 0.77028 0.90170 0.87009 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.96 55.48 0.77 -25.07 16 2 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 3 Si 0.90 22.07 28.62 -169.99 -4.86 17.20 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.39 -11.17 9.95 30.89 0.31 -10.86 16 8 H 0.11 3.09 5.44 -52.48 -0.29 2.80 16 9 O -0.22 -5.91 8.59 0.08 0.00 -5.91 16 10 C 0.16 3.81 6.65 -39.10 -0.26 3.55 16 11 C -0.22 -4.80 9.17 -39.39 -0.36 -5.16 16 12 C -0.08 -1.41 10.04 -39.61 -0.40 -1.80 16 13 C -0.19 -3.19 9.70 -39.53 -0.38 -3.57 16 14 C -0.04 -0.64 4.37 -104.65 -0.46 -1.10 16 15 C -0.09 -1.05 4.18 -29.04 -0.12 -1.17 16 16 C 0.52 6.83 7.69 -10.98 -0.08 6.74 16 17 O -0.51 -9.31 15.45 5.55 0.09 -9.23 16 18 N -0.62 -5.82 2.98 -173.05 -0.52 -6.34 16 19 C 0.11 0.56 6.31 -3.93 -0.02 0.54 16 20 C -0.17 -0.81 5.69 -26.83 -0.15 -0.96 16 21 C 0.08 0.55 3.19 -26.69 -0.09 0.47 16 22 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 23 O -0.56 -4.25 13.25 -35.23 -0.47 -4.72 16 24 C 0.09 0.84 3.70 -26.63 -0.10 0.74 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 26 F -0.20 -2.34 17.01 2.25 0.04 -2.31 16 27 C 0.09 0.87 6.17 -3.73 -0.02 0.85 16 28 C -0.17 -3.54 9.64 -39.39 -0.38 -3.92 16 29 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.13 3.06 5.64 -52.49 -0.30 2.77 16 31 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.10 1.48 8.06 -52.48 -0.42 1.05 16 33 H 0.10 0.94 7.62 -51.93 -0.40 0.55 16 34 H 0.10 0.85 7.90 -51.93 -0.41 0.44 16 35 H 0.10 0.40 5.93 -51.93 -0.31 0.09 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.38 1.06 9.08 45.56 0.41 1.48 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.11 1.32 7.00 -51.93 -0.36 0.95 16 42 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -35.63 353.06 -6.83 -42.46 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.59 Total: 2.53 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.62 Total: -13.96 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.26 Total: -31.40 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.38 Total: -19.85 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.86 Total: 17.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.63 -6.83 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890693815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.326 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds