Wall clock time and date at job start Tue Mar 31 2020 13:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86804 * 120.00086 * 2 1 4 4 H 1.48504 * 109.46969 * 239.99962 * 3 2 1 5 5 H 1.48502 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47501 * 119.99883 * 3 2 1 7 7 C 1.38654 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99762 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99849 * 185.04412 * 9 7 2 11 11 C 1.38901 * 120.06991 * 354.17452 * 10 9 7 12 12 C 1.38078 * 119.93252 * 180.27278 * 11 10 9 13 13 C 1.38319 * 120.06736 * 359.97438 * 12 11 10 14 14 C 1.38288 * 120.14087 * 0.03939 * 13 12 11 15 15 C 1.50696 * 119.96484 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47535 * 269.98042 * 15 14 13 17 17 O 1.21286 * 119.99739 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00222 * 180.02562 * 16 15 14 19 19 C 1.46927 * 120.63127 * 359.71537 * 18 16 15 20 20 C 1.52758 * 109.00742 * 233.58552 * 19 18 16 21 21 C 1.53036 * 109.38691 * 305.58711 * 20 19 18 22 22 H 1.09002 * 109.44736 * 301.22859 * 21 20 19 23 23 O 1.42909 * 109.46335 * 181.26196 * 21 20 19 24 24 C 1.53037 * 109.53947 * 61.24090 * 21 20 19 25 25 H 1.08996 * 109.50209 * 178.68335 * 24 21 20 26 26 F 1.39903 * 109.52379 * 58.60030 * 24 21 20 27 27 C 1.46927 * 120.63166 * 180.02562 * 18 16 15 28 28 C 1.38119 * 120.06749 * 359.95895 * 14 13 12 29 29 H 0.97007 * 120.00099 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.03325 * 0.26035 * 11 10 9 31 31 H 1.07993 * 119.96368 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.93343 * 180.02562 * 13 12 11 33 33 H 1.09003 * 109.47279 * 29.98155 * 15 14 13 34 34 H 1.09007 * 109.46601 * 149.97841 * 15 14 13 35 35 H 1.08998 * 109.58482 * 353.42311 * 19 18 16 36 36 H 1.09006 * 109.58461 * 113.84858 * 19 18 16 37 37 H 1.09003 * 109.56038 * 185.55159 * 20 19 18 38 38 H 1.08996 * 109.36159 * 65.50074 * 20 19 18 39 39 H 0.96700 * 113.99434 * 59.93121 * 23 21 20 40 40 H 1.09003 * 109.58631 * 246.15075 * 27 18 16 41 41 H 1.08996 * 109.58747 * 6.43541 * 27 18 16 42 42 H 1.07991 * 120.03485 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0700 -3.5045 0.1084 11 6 3.4573 -3.4400 0.0885 12 6 4.2024 -4.5979 0.1917 13 6 3.5687 -5.8211 0.3153 14 6 2.1876 -5.8887 0.3351 15 6 1.5012 -7.2236 0.4694 16 6 1.2582 -7.8036 -0.9001 17 8 1.6085 -7.1932 -1.8880 18 7 0.6518 -9.0004 -1.0272 19 6 0.2274 -9.7544 0.1603 20 6 0.8169 -11.1621 0.0926 21 6 0.4282 -11.8122 -1.2372 22 1 -0.6580 -11.8483 -1.3197 23 8 0.9541 -13.1400 -1.2897 24 6 1.0004 -10.9910 -2.3949 25 1 0.7431 -11.4673 -3.3409 26 9 2.3921 -10.9171 -2.2726 27 6 0.4086 -9.5790 -2.3556 28 6 1.4367 -4.7341 0.2323 29 1 -0.4851 0.8401 -0.0004 30 1 3.9528 -2.4851 -0.0077 31 1 5.2811 -4.5483 0.1768 32 1 4.1536 -6.7254 0.3963 33 1 2.1330 -7.9009 1.0439 34 1 0.5485 -7.0922 0.9826 35 1 0.5856 -9.2525 1.0590 36 1 -0.8605 -9.8176 0.1834 37 1 0.4288 -11.7602 0.9171 38 1 1.9028 -11.1030 0.1650 39 1 0.6336 -13.7181 -0.5839 40 1 -0.6643 -9.6276 -2.5422 41 1 0.8841 -8.9601 -3.1165 42 1 0.3582 -4.7874 0.2483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890693816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:12 Heat of formation + Delta-G solvation = -132.364748 kcal Electronic energy + Delta-G solvation = -27014.572866 eV Core-core repulsion = 22874.852450 eV Total energy + Delta-G solvation = -4139.720416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.83743 -40.27417 -38.93242 -38.13057 -36.51623 -35.93757 -32.59096 -32.16384 -31.63553 -31.07809 -29.13728 -27.23436 -25.34062 -24.92689 -23.81607 -21.77226 -21.47460 -20.62130 -19.28896 -18.02227 -17.58897 -17.33059 -16.94410 -16.35905 -16.14197 -15.95767 -15.64545 -15.05762 -14.78433 -14.36326 -14.30983 -14.15340 -13.97821 -13.66504 -13.52103 -13.38286 -13.02508 -12.76983 -12.43233 -12.34800 -12.15285 -12.11449 -11.79950 -11.55089 -11.45657 -11.21457 -10.83323 -10.78215 -10.73051 -10.57436 -10.50810 -10.41320 -9.72724 -9.28737 -8.91077 -8.78169 -8.01186 -7.15998 -6.39077 -3.98018 2.11905 2.44934 2.67973 2.79689 3.16897 3.18137 3.20481 3.48306 3.99562 4.01380 4.07963 4.23404 4.47065 4.50056 4.57945 4.76898 4.83673 4.91846 4.98938 5.07190 5.14028 5.17006 5.23169 5.27678 5.43746 5.48911 5.53396 5.70206 5.74406 5.79576 5.99357 6.20604 6.24690 6.39440 6.70844 6.97287 7.05931 7.12653 7.19781 7.31964 7.42881 7.49579 7.88517 8.06072 8.21037 9.06717 9.77952 10.79239 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030418 B = 0.002429 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.286060 B =11525.150604 C =11773.055272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.035 4.035 15 C -0.091 4.091 16 C 0.521 3.479 17 O -0.512 6.512 18 N -0.622 5.622 19 C 0.108 3.892 20 C -0.171 4.171 21 C 0.080 3.920 22 H 0.075 0.925 23 O -0.560 6.560 24 C 0.089 3.911 25 H 0.098 0.902 26 F -0.198 7.198 27 C 0.087 3.913 28 C -0.174 4.174 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.382 0.618 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -24.333 1.726 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.035 4.035 15 C -0.131 4.131 16 C 0.309 3.691 17 O -0.385 6.385 18 N -0.359 5.359 19 C -0.015 4.015 20 C -0.210 4.210 21 C 0.021 3.979 22 H 0.092 0.908 23 O -0.366 6.366 24 C 0.051 3.949 25 H 0.116 0.884 26 F -0.179 7.179 27 C -0.036 4.036 28 C -0.194 4.194 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.229 0.771 40 H 0.105 0.895 41 H 0.130 0.870 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.468 -23.488 0.640 23.542 hybrid contribution 0.253 0.446 0.519 0.730 sum -1.215 -23.041 1.159 23.103 Atomic orbital electron populations 1.70033 1.05934 1.27633 1.46483 1.25267 0.95830 0.98756 0.96674 0.85794 0.78684 0.79859 0.79157 1.19535 1.20328 1.19539 1.21269 0.91753 0.80883 1.52791 0.89192 1.83974 1.34204 1.11365 1.78814 1.19271 0.90245 0.87957 0.92403 1.21181 0.93844 0.98969 1.10909 1.20678 0.98398 0.92301 0.97905 1.20356 0.93304 0.96928 1.10828 1.18657 0.93253 0.91687 0.99935 1.20616 1.02442 0.95877 0.94154 1.20806 0.76260 0.79789 0.92196 1.90759 1.48876 1.58923 1.39920 1.48097 1.61474 1.20119 1.06169 1.21635 0.99640 0.91368 0.88834 1.22580 1.03819 0.96793 0.97760 1.22356 0.97528 0.83085 0.94947 0.90756 1.86568 1.73058 1.21553 1.55376 1.21965 0.77116 0.96223 0.99577 0.88407 1.92854 1.30384 1.97357 1.97291 1.22138 1.01543 0.92590 0.87339 1.19924 0.98997 0.89968 1.10479 0.92074 0.85611 0.87456 0.87947 0.88367 0.88200 0.88545 0.90824 0.89718 0.89739 0.77058 0.89547 0.86996 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.67 55.48 0.76 -25.14 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.39 -11.24 9.49 30.89 0.29 -10.95 16 8 H 0.09 2.40 5.21 -52.48 -0.27 2.13 16 9 O -0.18 -5.31 9.76 0.06 0.00 -5.31 16 10 C 0.15 3.92 6.65 -39.10 -0.26 3.66 16 11 C -0.23 -5.28 9.17 -39.39 -0.36 -5.64 16 12 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 13 C -0.20 -3.64 9.70 -39.53 -0.38 -4.03 16 14 C -0.03 -0.65 4.37 -104.65 -0.46 -1.11 16 15 C -0.09 -1.24 4.18 -29.04 -0.12 -1.36 16 16 C 0.52 7.81 7.69 -10.99 -0.08 7.72 16 17 O -0.51 -10.21 15.45 5.55 0.09 -10.12 16 18 N -0.62 -6.74 2.96 -173.06 -0.51 -7.25 16 19 C 0.11 0.73 6.31 -3.93 -0.02 0.71 16 20 C -0.17 -1.03 5.57 -26.84 -0.15 -1.18 16 21 C 0.08 0.53 3.25 -26.69 -0.09 0.44 16 22 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 23 O -0.56 -4.07 13.28 -35.23 -0.47 -4.54 16 24 C 0.09 0.80 3.84 -26.63 -0.10 0.70 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 26 F -0.20 -2.61 16.44 2.25 0.04 -2.57 16 27 C 0.09 0.85 6.17 -3.73 -0.02 0.82 16 28 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.13 2.86 5.64 -52.48 -0.30 2.57 16 31 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.10 1.05 7.62 -51.93 -0.40 0.66 16 34 H 0.10 1.13 7.90 -51.92 -0.41 0.72 16 35 H 0.10 0.56 5.93 -51.93 -0.31 0.26 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.71 7.74 -51.93 -0.40 0.31 16 39 H 0.38 1.00 9.08 45.56 0.41 1.41 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.11 1.36 7.00 -51.93 -0.36 0.99 16 42 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -37.66 353.30 -6.98 -44.65 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.55 Total: 4.33 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.63 Total: -15.34 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.25 Total: -32.39 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.38 Total: -19.97 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.66 -6.98 -44.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890693816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.717 kcal (2) G-P(sol) polarization free energy of solvation -37.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds