Wall clock time and date at job start Tue Mar 31 2020 13:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86804 * 120.00086 * 2 1 4 4 H 1.48504 * 109.46969 * 239.99962 * 3 2 1 5 5 H 1.48502 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47501 * 119.99883 * 3 2 1 7 7 C 1.38654 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99762 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99849 * 185.04412 * 9 7 2 11 11 C 1.38901 * 120.06991 * 354.17452 * 10 9 7 12 12 C 1.38078 * 119.93252 * 180.27278 * 11 10 9 13 13 C 1.38319 * 120.06736 * 359.97438 * 12 11 10 14 14 C 1.38288 * 120.14087 * 0.03939 * 13 12 11 15 15 C 1.50696 * 119.96484 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47535 * 269.98042 * 15 14 13 17 17 O 1.21286 * 119.99739 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00222 * 180.02562 * 16 15 14 19 19 C 1.46927 * 120.63127 * 359.71537 * 18 16 15 20 20 C 1.52758 * 109.00742 * 233.58552 * 19 18 16 21 21 C 1.53036 * 109.38691 * 305.58711 * 20 19 18 22 22 H 1.09002 * 109.44736 * 301.22859 * 21 20 19 23 23 O 1.42909 * 109.46335 * 181.26196 * 21 20 19 24 24 C 1.53037 * 109.53947 * 61.24090 * 21 20 19 25 25 H 1.08996 * 109.50209 * 178.68335 * 24 21 20 26 26 F 1.39903 * 109.52379 * 58.60030 * 24 21 20 27 27 C 1.46927 * 120.63166 * 180.02562 * 18 16 15 28 28 C 1.38119 * 120.06749 * 359.95895 * 14 13 12 29 29 H 0.97007 * 120.00099 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.03325 * 0.26035 * 11 10 9 31 31 H 1.07993 * 119.96368 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.93343 * 180.02562 * 13 12 11 33 33 H 1.09003 * 109.47279 * 29.98155 * 15 14 13 34 34 H 1.09007 * 109.46601 * 149.97841 * 15 14 13 35 35 H 1.08998 * 109.58482 * 353.42311 * 19 18 16 36 36 H 1.09006 * 109.58461 * 113.84858 * 19 18 16 37 37 H 1.09003 * 109.56038 * 185.55159 * 20 19 18 38 38 H 1.08996 * 109.36159 * 65.50074 * 20 19 18 39 39 H 0.96700 * 113.99434 * 59.93121 * 23 21 20 40 40 H 1.09003 * 109.58631 * 246.15075 * 27 18 16 41 41 H 1.08996 * 109.58747 * 6.43541 * 27 18 16 42 42 H 1.07991 * 120.03485 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0700 -3.5045 0.1084 11 6 3.4573 -3.4400 0.0885 12 6 4.2024 -4.5979 0.1917 13 6 3.5687 -5.8211 0.3153 14 6 2.1876 -5.8887 0.3351 15 6 1.5012 -7.2236 0.4694 16 6 1.2582 -7.8036 -0.9001 17 8 1.6085 -7.1932 -1.8880 18 7 0.6518 -9.0004 -1.0272 19 6 0.2274 -9.7544 0.1603 20 6 0.8169 -11.1621 0.0926 21 6 0.4282 -11.8122 -1.2372 22 1 -0.6580 -11.8483 -1.3197 23 8 0.9541 -13.1400 -1.2897 24 6 1.0004 -10.9910 -2.3949 25 1 0.7431 -11.4673 -3.3409 26 9 2.3921 -10.9171 -2.2726 27 6 0.4086 -9.5790 -2.3556 28 6 1.4367 -4.7341 0.2323 29 1 -0.4851 0.8401 -0.0004 30 1 3.9528 -2.4851 -0.0077 31 1 5.2811 -4.5483 0.1768 32 1 4.1536 -6.7254 0.3963 33 1 2.1330 -7.9009 1.0439 34 1 0.5485 -7.0922 0.9826 35 1 0.5856 -9.2525 1.0590 36 1 -0.8605 -9.8176 0.1834 37 1 0.4288 -11.7602 0.9171 38 1 1.9028 -11.1030 0.1650 39 1 0.6336 -13.7181 -0.5839 40 1 -0.6643 -9.6276 -2.5422 41 1 0.8841 -8.9601 -3.1165 42 1 0.3582 -4.7874 0.2483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890693816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:12 Heat of formation + Delta-G solvation = -160.853124 kcal Electronic energy + Delta-G solvation = -27015.808214 eV Core-core repulsion = 22874.852450 eV Total energy + Delta-G solvation = -4140.955765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.69360 -41.36241 -40.57238 -38.96959 -38.15073 -36.78110 -34.35815 -33.71889 -32.33927 -31.98377 -30.85308 -28.58900 -27.27873 -25.80316 -24.46125 -23.30551 -22.87449 -21.78613 -20.23190 -19.41940 -18.75395 -18.65855 -18.14908 -17.19080 -17.07460 -16.80005 -16.71617 -16.52937 -16.27203 -16.07644 -15.51743 -15.45082 -15.01872 -14.88426 -14.64069 -14.39941 -14.21885 -14.04058 -13.88463 -13.59741 -13.31004 -12.96256 -12.86245 -12.76788 -12.71598 -12.45547 -12.37095 -12.24479 -12.19122 -12.12960 -11.40286 -11.21355 -11.04353 -10.85347 -10.77265 -9.76925 -9.64698 -8.98900 -8.46992 -6.15574 0.50332 0.74563 1.33932 1.45123 1.50520 1.58932 1.90842 2.17944 2.82159 2.98712 3.14824 3.37597 3.41737 3.58003 3.67634 3.73554 3.90269 3.94984 4.08834 4.12412 4.24395 4.29815 4.38109 4.40801 4.53171 4.55988 4.57596 4.63744 4.71103 4.72748 4.84236 4.88938 5.05589 5.12423 5.26134 5.29668 5.45645 5.63712 5.71614 5.74130 6.02471 6.18953 6.31053 6.84411 6.97402 7.14700 7.78531 8.76333 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030418 B = 0.002429 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.286060 B =11525.150604 C =11773.055272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.246 4.246 12 C -0.074 4.074 13 C -0.183 4.183 14 C -0.027 4.027 15 C -0.088 4.088 16 C 0.515 3.485 17 O -0.578 6.578 18 N -0.614 5.614 19 C 0.098 3.902 20 C -0.164 4.164 21 C 0.084 3.916 22 H 0.107 0.893 23 O -0.582 6.582 24 C 0.077 3.923 25 H 0.111 0.889 26 F -0.226 7.226 27 C 0.085 3.915 28 C -0.190 4.190 29 H 0.273 0.727 30 H 0.119 0.881 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.058 0.942 39 H 0.402 0.598 40 H 0.119 0.881 41 H 0.078 0.922 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -27.281 3.227 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.492 4.492 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.266 4.266 12 C -0.092 4.092 13 C -0.201 4.201 14 C -0.027 4.027 15 C -0.127 4.127 16 C 0.305 3.695 17 O -0.457 6.457 18 N -0.348 5.348 19 C -0.023 4.023 20 C -0.202 4.202 21 C 0.025 3.975 22 H 0.124 0.876 23 O -0.391 6.391 24 C 0.040 3.960 25 H 0.128 0.872 26 F -0.207 7.207 27 C -0.038 4.038 28 C -0.209 4.209 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.137 0.863 41 H 0.096 0.904 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.940 -26.554 2.183 26.660 hybrid contribution 0.133 0.941 0.054 0.952 sum -0.807 -25.612 2.237 25.723 Atomic orbital electron populations 1.70181 1.08007 1.28850 1.48960 1.26604 0.96895 1.02711 0.95840 0.84645 0.77404 0.74219 0.79905 1.18427 1.19402 1.17964 1.21784 0.92490 0.81525 1.53354 0.88316 1.83933 1.35836 1.12528 1.81672 1.19868 0.91608 0.87964 0.94279 1.21299 0.93211 1.00165 1.11879 1.21112 1.00197 0.91491 0.96370 1.20945 0.93672 0.97918 1.07603 1.19186 0.93670 0.92927 0.96938 1.20728 1.04196 0.93488 0.94316 1.21006 0.76059 0.80716 0.91723 1.90744 1.52113 1.61080 1.41749 1.48169 1.59572 1.19010 1.08062 1.22055 1.01571 0.91286 0.87366 1.22552 1.02239 0.96707 0.98749 1.22364 0.98845 0.82536 0.93769 0.87577 1.86520 1.73763 1.22078 1.56750 1.22275 0.75466 0.96299 1.01923 0.87159 1.92792 1.32954 1.97480 1.97519 1.22222 1.03148 0.92384 0.86084 1.20198 0.99326 0.90319 1.11099 0.91814 0.86367 0.83824 0.84075 0.84380 0.85482 0.87182 0.87816 0.86142 0.92358 0.74716 0.86321 0.90373 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.08 13.67 21.61 0.30 -57.79 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 44.23 29.55 68.60 2.03 46.25 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.42 -25.27 9.49 67.92 0.64 -24.62 16 8 H 0.10 5.54 5.21 -2.91 -0.02 5.53 16 9 O -0.23 -14.73 9.76 -22.71 -0.22 -14.95 16 10 C 0.11 6.02 6.65 22.58 0.15 6.17 16 11 C -0.25 -11.63 9.17 22.39 0.21 -11.43 16 12 C -0.07 -2.80 10.04 22.25 0.22 -2.58 16 13 C -0.18 -6.35 9.70 22.30 0.22 -6.14 16 14 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 15 C -0.09 -2.13 4.18 29.10 0.12 -2.01 16 16 C 0.52 14.71 7.69 87.66 0.67 15.38 16 17 O -0.58 -23.45 15.45 -3.05 -0.05 -23.49 16 18 N -0.61 -11.82 2.96 -819.83 -2.43 -14.25 16 19 C 0.10 0.88 6.31 86.22 0.54 1.43 16 20 C -0.16 -1.28 5.57 30.53 0.17 -1.11 16 21 C 0.08 0.79 3.25 30.62 0.10 0.89 16 22 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 23 O -0.58 -6.63 13.28 -148.98 -1.98 -8.61 16 24 C 0.08 1.26 3.84 30.66 0.12 1.37 16 25 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 26 F -0.23 -5.85 16.44 44.97 0.74 -5.11 16 27 C 0.08 1.53 6.17 86.35 0.53 2.06 16 28 C -0.19 -8.69 9.65 22.39 0.22 -8.47 16 29 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 30 H 0.12 5.62 5.64 -2.91 -0.02 5.60 16 31 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 32 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.14 2.25 7.62 -2.39 -0.02 2.24 16 34 H 0.13 2.41 7.90 -2.38 -0.02 2.39 16 35 H 0.11 0.72 5.93 -2.39 -0.01 0.70 16 36 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.06 0.80 7.74 -2.39 -0.02 0.78 16 39 H 0.40 0.62 9.08 -74.06 -0.67 -0.06 16 40 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.97 7.00 -2.39 -0.02 1.95 16 42 H 0.11 4.91 8.06 -2.92 -0.02 4.89 16 Total: -1.00 -91.31 353.30 3.08 -88.23 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.39 Total: 20.70 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 4.29 Total: -30.98 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -2.13 Total: -72.04 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -2.25 Total: -47.05 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.74 Total: -5.11 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -91.31 3.08 -88.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890693816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.623 kcal (2) G-P(sol) polarization free energy of solvation -91.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds