Wall clock time and date at job start Tue Mar 31 2020 13:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 119.99855 * 2 1 4 4 H 1.48504 * 109.47134 * 239.99799 * 3 2 1 5 5 H 1.48494 * 109.47395 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47261 * 120.00121 * 3 2 1 7 7 C 1.38651 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00336 * 180.02562 * 7 2 1 9 9 O 1.34837 * 119.99696 * 0.02562 * 7 2 1 10 10 C 1.35756 * 116.99783 * 185.05360 * 9 7 2 11 11 C 1.38904 * 120.06899 * 354.46803 * 10 9 7 12 12 C 1.38080 * 119.92787 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.07060 * 0.02562 * 12 11 10 14 14 C 1.38284 * 120.13618 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.96267 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47360 * 89.99648 * 15 14 13 17 17 O 1.21286 * 119.99744 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00155 * 179.97438 * 16 15 14 19 19 C 1.46923 * 120.62910 * 179.97438 * 18 16 15 20 20 C 1.53194 * 108.77449 * 126.12366 * 19 18 16 21 21 C 1.53037 * 109.31171 * 54.63313 * 20 19 18 22 22 H 1.08998 * 109.46048 * 58.66345 * 21 20 19 23 23 O 1.42901 * 109.45917 * 178.62841 * 21 20 19 24 24 C 1.53040 * 109.54181 * 298.63653 * 21 20 19 25 25 H 1.09001 * 109.49573 * 301.41411 * 24 21 20 26 26 F 1.39896 * 109.49920 * 181.31725 * 24 21 20 27 27 C 1.46924 * 120.63004 * 359.72878 * 18 16 15 28 28 C 1.38115 * 120.07187 * 0.27602 * 14 13 12 29 29 H 0.96998 * 119.99983 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.03070 * 0.02562 * 11 10 9 31 31 H 1.07998 * 119.95954 * 180.02562 * 12 11 10 32 32 H 1.07994 * 119.93080 * 180.02562 * 13 12 11 33 33 H 1.09002 * 109.47006 * 330.00040 * 15 14 13 34 34 H 1.08999 * 109.47025 * 209.99448 * 15 14 13 35 35 H 1.08996 * 109.59141 * 245.90972 * 19 18 16 36 36 H 1.08999 * 109.58975 * 6.33831 * 19 18 16 37 37 H 1.08993 * 109.50144 * 174.58647 * 20 19 18 38 38 H 1.09003 * 109.49648 * 294.68728 * 20 19 18 39 39 H 0.96700 * 114.00251 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.58723 * 353.66356 * 27 18 16 41 41 H 1.09003 * 109.58635 * 114.09131 * 27 18 16 42 42 H 1.07997 * 120.03644 * 179.71209 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1076 11 6 3.4574 -3.4394 0.0952 12 6 4.2024 -4.5968 0.2048 13 6 3.5686 -5.8202 0.3264 14 6 2.1875 -5.8883 0.3391 15 6 1.5009 -7.2232 0.4724 16 6 1.2783 -7.5303 1.9309 17 8 1.6410 -6.7425 2.7787 18 7 0.6753 -8.6799 2.2931 19 6 0.4518 -8.9935 3.7110 20 6 -1.0334 -9.3060 3.9187 21 6 -1.4564 -10.4170 2.9549 22 1 -0.8485 -11.3038 3.1337 23 8 -2.8336 -10.7333 3.1681 24 6 -1.2592 -9.9459 1.5123 25 1 -1.8478 -9.0448 1.3402 26 9 -1.6742 -10.9508 0.6320 27 6 0.2240 -9.6408 1.2774 28 6 1.4366 -4.7348 0.2246 29 1 -0.4850 0.8400 0.0004 30 1 3.9528 -2.4844 0.0007 31 1 5.2812 -4.5467 0.1956 32 1 4.1535 -6.7239 0.4125 33 1 2.1254 -7.9988 0.0290 34 1 0.5409 -7.1910 -0.0427 35 1 1.0503 -9.8599 3.9924 36 1 0.7342 -8.1373 4.3235 37 1 -1.1962 -9.6336 4.9454 38 1 -1.6243 -8.4110 3.7238 39 1 -3.1710 -11.4312 2.5899 40 1 0.3561 -9.2117 0.2842 41 1 0.8040 -10.5600 1.3607 42 1 0.3580 -4.7891 0.2299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890693818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:18 Heat of formation + Delta-G solvation = -134.741003 kcal Electronic energy + Delta-G solvation = -26899.367592 eV Core-core repulsion = 22759.544134 eV Total energy + Delta-G solvation = -4139.823458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.22634 -40.43237 -38.98346 -38.11155 -36.54274 -36.00145 -32.81352 -32.23694 -31.52905 -30.82024 -29.18169 -27.30430 -25.35697 -24.97080 -23.65712 -21.89184 -21.52323 -20.76827 -19.40196 -18.18113 -17.64371 -17.30003 -17.01080 -16.46143 -16.33738 -16.01418 -15.59233 -15.08187 -14.99086 -14.59868 -14.38889 -14.16007 -13.87413 -13.58950 -13.43440 -13.29874 -13.20544 -12.95611 -12.55857 -12.38059 -12.27172 -11.95296 -11.83253 -11.57596 -11.54098 -11.24851 -11.20873 -10.81727 -10.75564 -10.60500 -10.43423 -10.35826 -9.79603 -9.31212 -9.01606 -8.79905 -8.05089 -7.19109 -6.40560 -3.99741 2.07743 2.40985 2.57831 2.70289 3.15560 3.17410 3.19718 3.59131 3.79194 3.99859 4.01980 4.12669 4.34336 4.44188 4.61791 4.76455 4.82412 4.89795 5.00533 5.05796 5.11183 5.17348 5.18167 5.35531 5.40401 5.44801 5.57829 5.65650 5.75760 5.76249 5.94732 6.15670 6.20772 6.35921 6.67194 6.93582 7.09106 7.09745 7.10428 7.27831 7.39369 7.46896 7.84938 8.04262 8.11709 9.05068 9.75529 10.77654 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019172 B = 0.002611 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.148343 B =10722.944614 C =11299.430354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.074 4.074 13 C -0.197 4.197 14 C -0.035 4.035 15 C -0.094 4.094 16 C 0.520 3.480 17 O -0.508 6.508 18 N -0.623 5.623 19 C 0.111 3.889 20 C -0.128 4.128 21 C 0.086 3.914 22 H 0.069 0.931 23 O -0.559 6.559 24 C 0.042 3.958 25 H 0.100 0.900 26 F -0.205 7.205 27 C 0.088 3.912 28 C -0.175 4.175 29 H 0.270 0.730 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.383 0.617 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 -22.764 3.099 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.102 3.898 11 C -0.249 4.249 12 C -0.092 4.092 13 C -0.216 4.216 14 C -0.035 4.035 15 C -0.134 4.134 16 C 0.309 3.691 17 O -0.381 6.381 18 N -0.359 5.359 19 C -0.011 4.011 20 C -0.166 4.166 21 C 0.026 3.974 22 H 0.087 0.913 23 O -0.365 6.365 24 C 0.004 3.996 25 H 0.118 0.882 26 F -0.186 7.186 27 C -0.037 4.037 28 C -0.194 4.194 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.231 0.769 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.383 -21.626 3.977 21.992 hybrid contribution 0.354 0.198 -0.547 0.681 sum -0.028 -21.428 3.430 21.701 Atomic orbital electron populations 1.70029 1.05942 1.27688 1.46293 1.25270 0.95832 0.98774 0.96618 0.85793 0.78697 0.79844 0.79158 1.19534 1.20303 1.19515 1.21268 0.91751 0.80853 1.52903 0.89168 1.83977 1.34241 1.11375 1.78702 1.19266 0.90253 0.87951 0.92367 1.21185 0.93838 0.98969 1.10944 1.20678 0.98387 0.92285 0.97898 1.20334 0.93232 0.97021 1.10967 1.18637 0.93256 0.91815 0.99840 1.20651 1.02554 0.97375 0.92798 1.20837 0.76687 0.79704 0.91907 1.90773 1.48556 1.45995 1.52741 1.48101 1.61013 1.20333 1.06480 1.21608 0.94358 1.02729 0.82403 1.21919 0.96423 0.98348 0.99955 1.22359 0.84007 0.98382 0.92625 0.91320 1.86538 1.24961 1.60957 1.64010 1.22818 0.97108 0.90333 0.89296 0.88237 1.92819 1.91531 1.63293 1.70946 1.22198 0.92841 0.94689 0.93936 1.19928 0.99025 0.89963 1.10484 0.92033 0.85594 0.87450 0.87953 0.88237 0.88220 0.91060 0.87594 0.88979 0.90018 0.76866 0.87769 0.89856 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.25 9.76 0.01 0.00 -5.25 16 10 C 0.16 3.88 6.65 -39.10 -0.26 3.62 16 11 C -0.23 -5.19 9.17 -39.39 -0.36 -5.55 16 12 C -0.07 -1.42 10.04 -39.61 -0.40 -1.82 16 13 C -0.20 -3.51 9.70 -39.53 -0.38 -3.90 16 14 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 15 C -0.09 -1.22 4.18 -29.03 -0.12 -1.34 16 16 C 0.52 7.29 7.69 -10.99 -0.08 7.21 16 17 O -0.51 -9.58 15.45 5.55 0.09 -9.49 16 18 N -0.62 -6.26 2.97 -172.75 -0.51 -6.77 16 19 C 0.11 0.99 6.43 -3.71 -0.02 0.96 16 20 C -0.13 -1.03 5.73 -26.61 -0.15 -1.18 16 21 C 0.09 0.63 3.22 -26.69 -0.09 0.54 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 23 O -0.56 -4.61 13.32 -35.23 -0.47 -5.08 16 24 C 0.04 0.32 3.71 -26.59 -0.10 0.22 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 26 F -0.21 -1.67 16.66 2.25 0.04 -1.63 16 27 C 0.09 0.63 6.08 -3.69 -0.02 0.60 16 28 C -0.17 -3.81 9.64 -39.40 -0.38 -4.19 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 31 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.10 0.97 7.89 -51.93 -0.41 0.56 16 34 H 0.10 1.10 7.62 -51.93 -0.40 0.70 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.11 1.16 7.00 -51.93 -0.36 0.79 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.38 1.92 8.69 45.56 0.40 2.31 16 40 H 0.10 0.66 5.93 -51.93 -0.31 0.35 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -35.41 353.60 -7.02 -42.42 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.59 Total: 5.45 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -2.63 Total: -15.82 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.25 Total: -31.82 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.38 Total: -19.83 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.41 -7.02 -42.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890693818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.318 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds