Wall clock time and date at job start Tue Mar 31 2020 14:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 110.91146 * 2 1 4 4 C 1.54382 * 110.84842 * 123.58535 * 2 1 3 5 5 O 1.43241 * 107.58971 * 96.83066 * 4 2 1 6 6 C 1.43643 * 109.97133 * 358.28961 * 5 4 2 7 7 H 1.08999 * 110.30587 * 265.51153 * 6 5 4 8 8 C 1.52998 * 110.30817 * 143.44262 * 6 5 4 9 9 C 1.52993 * 109.47523 * 66.45293 * 8 6 5 10 10 N 1.46502 * 109.47519 * 180.02562 * 9 8 6 11 11 C 1.34778 * 120.00058 * 180.02562 * 10 9 8 12 12 O 1.21757 * 120.00141 * 359.97438 * 11 10 9 13 13 C 1.46231 * 119.99736 * 179.97438 * 11 10 9 14 14 S 1.75667 * 125.22918 * 359.69527 * 13 11 10 15 15 C 1.75479 * 92.09065 * 179.97438 * 14 13 11 16 16 C 1.32756 * 111.36311 * 0.35126 * 15 14 13 17 17 C 1.39550 * 125.22669 * 179.97438 * 13 11 10 18 18 C 1.40540 * 123.71566 * 359.95935 * 17 13 11 19 19 H 1.08001 * 119.99633 * 335.11430 * 18 17 13 20 20 C 1.40307 * 119.99799 * 155.11044 * 18 17 13 21 21 N 1.30634 * 119.99635 * 162.49776 * 20 18 17 22 22 Si 1.86797 * 120.00222 * 342.49974 * 20 18 17 23 23 H 1.48508 * 109.46837 * 94.02679 * 22 20 18 24 24 H 1.48493 * 109.47251 * 214.02635 * 22 20 18 25 25 H 1.48501 * 109.47157 * 334.03133 * 22 20 18 26 26 C 1.54947 * 105.13506 * 24.42820 * 6 5 4 27 27 H 1.09004 * 109.46869 * 297.86701 * 1 2 3 28 28 H 1.08999 * 109.47230 * 57.86865 * 1 2 3 29 29 H 1.09006 * 109.47259 * 177.87110 * 1 2 3 30 30 H 1.09004 * 109.47450 * 182.13342 * 3 2 1 31 31 H 1.09007 * 109.47372 * 302.13149 * 3 2 1 32 32 H 1.09006 * 109.47216 * 62.13063 * 3 2 1 33 33 H 1.09004 * 109.83022 * 216.34667 * 4 2 1 34 34 H 1.09005 * 109.83136 * 337.22607 * 4 2 1 35 35 H 1.09001 * 109.46721 * 186.45405 * 8 6 5 36 36 H 1.09005 * 109.47091 * 306.45086 * 8 6 5 37 37 H 1.09008 * 109.46945 * 300.00133 * 9 8 6 38 38 H 1.09005 * 109.47107 * 59.99802 * 9 8 6 39 39 H 0.96993 * 119.99682 * 359.97438 * 10 9 8 40 40 H 1.07999 * 124.31349 * 180.12450 * 15 14 13 41 41 H 1.07999 * 122.78729 * 179.73837 * 16 15 14 42 42 H 0.97007 * 119.99860 * 180.02562 * 21 20 18 43 43 H 1.09006 * 111.12113 * 205.63955 * 26 6 5 44 44 H 1.08999 * 111.12677 * 81.47783 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4291 0.0000 4 6 2.0794 -0.7981 1.2019 5 8 2.3853 -2.1193 0.7408 6 6 2.0401 -2.2465 -0.6478 7 1 1.0385 -2.6636 -0.7519 8 6 3.0599 -3.1296 -1.3697 9 6 2.9619 -4.5609 -0.8383 10 7 3.9388 -5.4063 -1.5291 11 6 4.0332 -6.7154 -1.2226 12 8 3.3070 -7.1953 -0.3713 13 6 5.0079 -7.5593 -1.9126 14 16 6.1142 -7.0146 -3.1638 15 6 6.8061 -8.6175 -3.3398 16 6 6.2304 -9.4858 -2.5170 17 6 5.1984 -8.9224 -1.6822 18 6 4.4643 -9.6647 -0.7413 19 1 4.0154 -9.1684 0.1064 20 6 4.3145 -11.0503 -0.9034 21 7 3.9442 -11.7898 0.1077 22 14 4.6447 -11.8374 -2.5649 23 1 6.0482 -12.3203 -2.6137 24 1 3.7201 -12.9825 -2.7627 25 1 4.4284 -10.8352 -3.6392 26 6 2.0827 -0.8029 -1.2091 27 1 -0.3633 0.4804 0.9085 28 1 -0.3633 0.5466 -0.8702 29 1 -0.3634 -1.0270 -0.0382 30 1 3.1651 1.4021 -0.0383 31 1 1.6952 1.9637 -0.8703 32 1 1.7570 1.9400 0.9085 33 1 2.9829 -0.3204 1.5811 34 1 1.3275 -0.8447 1.9897 35 1 2.8521 -3.1242 -2.4397 36 1 4.0641 -2.7442 -1.1926 37 1 3.1697 -4.5662 0.2318 38 1 1.9577 -4.9462 -1.0154 39 1 4.5170 -5.0241 -2.2076 40 1 7.5968 -8.8667 -4.0320 41 1 6.5123 -10.5275 -2.4753 42 1 3.8410 -12.7479 -0.0042 43 1 1.4334 -0.7002 -2.0786 44 1 3.1037 -0.5034 -1.4459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894493467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:40 Heat of formation + Delta-G solvation = -100.877240 kcal Electronic energy + Delta-G solvation = -24490.335423 eV Core-core repulsion = 20918.193584 eV Total energy + Delta-G solvation = -3572.141839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02992 -40.17758 -38.07952 -36.31887 -35.36996 -35.22479 -33.15928 -31.07590 -29.61246 -28.27646 -28.01983 -26.93154 -24.63370 -23.50941 -22.23799 -21.92280 -20.79209 -20.29707 -19.36795 -17.77662 -17.61875 -17.35080 -16.76415 -16.26887 -16.13480 -16.10743 -15.60326 -15.37863 -15.03926 -14.88952 -14.79060 -14.20762 -14.14899 -14.02688 -13.84117 -13.67787 -13.32494 -13.05863 -13.00275 -12.78600 -12.70685 -12.52614 -12.31776 -12.24379 -12.23411 -11.78705 -11.66759 -11.62273 -11.39533 -11.30126 -11.19226 -10.51573 -10.42971 -9.99266 -9.46330 -9.09563 -9.05936 -6.52524 0.10884 1.16957 1.18661 1.34862 1.44326 1.61578 1.70340 2.05785 2.47287 2.50759 2.85528 3.17279 3.40175 3.68037 3.83295 3.96723 4.06940 4.14602 4.24099 4.26137 4.34718 4.45027 4.50627 4.63007 4.71687 4.73126 4.79759 4.82558 4.83282 4.93636 4.97698 5.01091 5.04828 5.12386 5.17667 5.18679 5.19269 5.30854 5.34176 5.43600 5.68406 5.79492 6.11813 6.20267 6.47751 6.60469 6.93290 7.70476 7.99840 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.002565 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.815845 B =10913.730790 C =11721.937789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.132 4.132 4 C 0.049 3.951 5 O -0.408 6.408 6 C 0.081 3.919 7 H 0.069 0.931 8 C -0.114 4.114 9 C 0.132 3.868 10 N -0.734 5.734 11 C 0.584 3.416 12 O -0.607 6.607 13 C -0.462 4.462 14 S 0.055 5.945 15 C -0.152 4.152 16 C -0.198 4.198 17 C 0.096 3.904 18 C -0.413 4.413 19 H 0.063 0.937 20 C 0.037 3.963 21 N -0.815 5.815 22 Si 0.975 3.025 23 H -0.231 1.231 24 H -0.270 1.270 25 H -0.248 1.248 26 C -0.133 4.133 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.044 0.956 39 H 0.402 0.598 40 H 0.197 0.803 41 H 0.139 0.861 42 H 0.304 0.696 43 H 0.101 0.899 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 20.764 -8.363 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.189 4.189 4 C -0.027 4.027 5 O -0.328 6.328 6 C 0.023 3.977 7 H 0.087 0.913 8 C -0.152 4.152 9 C 0.009 3.991 10 N -0.386 5.386 11 C 0.380 3.620 12 O -0.492 6.492 13 C -0.581 4.581 14 S 0.312 5.688 15 C -0.287 4.287 16 C -0.231 4.231 17 C 0.084 3.916 18 C -0.443 4.443 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.439 5.439 22 Si 0.795 3.205 23 H -0.155 1.155 24 H -0.195 1.195 25 H -0.171 1.171 26 C -0.171 4.171 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.238 0.762 40 H 0.214 0.786 41 H 0.156 0.844 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.979 21.480 -8.133 22.989 hybrid contribution -0.391 -1.824 0.819 2.037 sum -1.369 19.656 -7.314 21.018 Atomic orbital electron populations 1.21839 0.92801 1.01845 1.03083 1.22123 0.96911 0.96850 0.93834 1.21728 1.00942 0.93227 1.03013 1.23440 1.00101 0.82288 0.96877 1.88467 1.85964 1.32184 1.26189 1.22980 0.97293 0.96450 0.80970 0.91327 1.21887 1.00815 0.91419 1.01048 1.21106 0.91518 0.90637 0.95877 1.45636 1.41234 1.08227 1.43553 1.17198 0.81981 0.81581 0.81271 1.90686 1.47428 1.74545 1.36583 1.23002 1.17366 0.98991 1.18745 1.82348 1.36356 1.10945 1.39121 1.25588 1.04056 0.96146 1.02926 1.21414 0.99832 1.01057 1.00845 1.18248 0.91307 0.91545 0.90464 1.19612 1.25569 0.92363 1.06778 0.91917 1.27433 0.91040 0.96928 1.02819 1.69624 1.31227 1.08947 1.34110 0.85475 0.80224 0.77881 0.76960 1.15549 1.19549 1.17110 1.23397 1.03265 0.91919 0.98503 0.91666 0.90761 0.93458 0.92238 0.90983 0.91706 0.90999 0.91586 0.87712 0.90118 0.94505 0.93761 0.76248 0.78571 0.84382 0.88446 0.88024 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.46 71.98 0.61 -1.14 16 2 C -0.10 -1.35 0.95 -50.92 -0.05 -1.40 16 3 C -0.13 -1.33 8.51 71.98 0.61 -0.72 16 4 C 0.05 0.96 6.99 72.45 0.51 1.47 16 5 O -0.41 -11.17 10.69 -148.98 -1.59 -12.76 16 6 C 0.08 1.77 3.13 31.26 0.10 1.87 16 7 H 0.07 1.55 7.75 -2.39 -0.02 1.53 16 8 C -0.11 -2.71 5.08 30.59 0.16 -2.56 16 9 C 0.13 4.74 5.59 86.38 0.48 5.22 16 10 N -0.73 -29.48 5.55 -467.48 -2.59 -32.07 16 11 C 0.58 30.67 7.76 86.32 0.67 31.34 16 12 O -0.61 -37.95 14.47 -4.53 -0.07 -38.01 16 13 C -0.46 -23.40 6.51 24.67 0.16 -23.24 16 14 S 0.05 2.03 22.25 -56.49 -1.26 0.77 16 15 C -0.15 -5.42 11.07 66.64 0.74 -4.69 16 16 C -0.20 -8.63 7.54 22.61 0.17 -8.46 16 17 C 0.10 5.13 5.27 -20.89 -0.11 5.01 16 18 C -0.41 -24.98 9.00 23.34 0.21 -24.77 16 19 H 0.06 4.43 6.29 -2.91 -0.02 4.42 16 20 C 0.04 2.03 5.48 85.37 0.47 2.50 16 21 N -0.82 -45.03 13.92 21.89 0.30 -44.72 16 22 Si 0.97 40.11 24.52 68.60 1.68 41.80 16 23 H -0.23 -8.22 6.64 99.48 0.66 -7.56 16 24 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 25 H -0.25 -10.39 6.72 99.48 0.67 -9.72 16 26 C -0.13 -1.95 5.53 32.05 0.18 -1.77 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.72 7.50 -2.38 -0.02 0.70 16 30 H 0.06 0.62 8.12 -2.39 -0.02 0.60 16 31 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 1.31 7.81 -2.39 -0.02 1.29 16 34 H 0.07 1.25 7.84 -2.38 -0.02 1.24 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.04 1.53 7.91 -2.38 -0.02 1.51 16 38 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.40 13.52 7.55 -92.71 -0.70 12.82 16 40 H 0.20 4.93 8.06 -2.91 -0.02 4.90 16 41 H 0.14 5.55 4.54 -2.91 -0.01 5.54 16 42 H 0.30 14.59 8.29 -92.70 -0.77 13.82 16 43 H 0.10 1.13 8.04 -2.38 -0.02 1.12 16 44 H 0.09 1.19 7.94 -2.39 -0.02 1.17 16 Total: -1.00 -76.23 363.36 1.60 -74.63 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.23 Total: 31.70 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 4.90 Total: -21.32 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -2.29 Total: -76.80 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -1.66 Total: -50.77 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.68 Total: 41.80 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.26 Total: 0.77 kcal Total: -76.23 1.60 -74.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894493467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.248 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds