Wall clock time and date at job start Tue Mar 31 2020 14:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.75310 * 2 1 4 4 C 1.54376 * 110.84780 * 123.47510 * 2 1 3 5 5 O 1.43239 * 107.58897 * 139.54821 * 4 2 1 6 6 C 1.43655 * 109.96929 * 1.70704 * 5 4 2 7 7 H 1.09004 * 110.30267 * 94.59301 * 6 5 4 8 8 C 1.53000 * 110.30789 * 216.65897 * 6 5 4 9 9 C 1.53004 * 109.47239 * 292.21098 * 8 6 5 10 10 N 1.46501 * 109.46913 * 180.02562 * 9 8 6 11 11 C 1.34778 * 119.99565 * 180.02562 * 10 9 8 12 12 O 1.21752 * 120.00270 * 359.97438 * 11 10 9 13 13 C 1.46238 * 119.99660 * 179.97438 * 11 10 9 14 14 S 1.75668 * 125.22967 * 0.02562 * 13 11 10 15 15 C 1.75473 * 92.09212 * 179.97438 * 14 13 11 16 16 C 1.32761 * 111.36604 * 0.02562 * 15 14 13 17 17 C 1.39551 * 125.22668 * 179.72103 * 13 11 10 18 18 C 1.40528 * 123.71580 * 0.02562 * 17 13 11 19 19 H 1.08000 * 120.00215 * 23.44280 * 18 17 13 20 20 C 1.40306 * 120.00000 * 203.44265 * 18 17 13 21 21 N 1.30636 * 120.00198 * 9.79647 * 20 18 17 22 22 Si 1.86803 * 119.99946 * 189.79592 * 20 18 17 23 23 H 1.48507 * 109.47134 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47283 * 119.99854 * 22 20 18 25 25 H 1.48501 * 109.47337 * 240.00050 * 22 20 18 26 26 C 1.54940 * 105.22179 * 335.62479 * 6 5 4 27 27 H 1.09001 * 109.46804 * 297.97826 * 1 2 3 28 28 H 1.09002 * 109.46950 * 57.97667 * 1 2 3 29 29 H 1.09000 * 109.47546 * 177.98125 * 1 2 3 30 30 H 1.08998 * 109.47674 * 182.02075 * 3 2 1 31 31 H 1.09005 * 109.47296 * 302.02513 * 3 2 1 32 32 H 1.09009 * 109.47241 * 62.02026 * 3 2 1 33 33 H 1.08997 * 109.83570 * 20.03146 * 4 2 1 34 34 H 1.09001 * 109.90581 * 259.09797 * 4 2 1 35 35 H 1.08996 * 109.46904 * 172.21062 * 8 6 5 36 36 H 1.08998 * 109.47036 * 52.21346 * 8 6 5 37 37 H 1.08995 * 109.46807 * 300.00081 * 9 8 6 38 38 H 1.08996 * 109.47203 * 60.00146 * 9 8 6 39 39 H 0.96996 * 120.00370 * 359.97438 * 10 9 8 40 40 H 1.08007 * 124.31414 * 180.02562 * 15 14 13 41 41 H 1.07991 * 122.78513 * 179.97438 * 16 15 14 42 42 H 0.97006 * 119.99840 * 180.02562 * 21 20 18 43 43 H 1.09000 * 111.12075 * 154.31012 * 26 6 5 44 44 H 1.08996 * 111.12554 * 278.47476 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0721 1.4307 0.0000 4 6 2.0794 -0.7957 1.2034 5 8 3.2044 -1.5539 0.7437 6 6 3.4463 -1.2795 -0.6455 7 1 4.1948 -0.4941 -0.7512 8 6 3.9049 -2.5493 -1.3655 9 6 5.2911 -2.9512 -0.8577 10 7 5.7303 -4.1667 -1.5476 11 6 6.9301 -4.7089 -1.2594 12 8 7.6490 -4.1883 -0.4260 13 6 7.3683 -5.9225 -1.9476 14 16 6.4456 -6.7839 -3.1692 15 6 7.7061 -7.9892 -3.3635 16 6 8.7356 -7.7460 -2.5613 17 6 8.5864 -6.5708 -1.7392 18 6 9.5586 -6.1294 -0.8256 19 1 9.2719 -5.5083 0.0102 20 6 10.9019 -6.4956 -0.9991 21 7 11.2820 -7.0811 -2.1033 22 14 12.1469 -6.1460 0.3490 23 1 11.4679 -5.4795 1.4892 24 1 12.7500 -7.4226 0.8091 25 1 13.2127 -5.2573 -0.1798 26 6 2.0839 -0.8037 -1.2094 27 1 -0.3633 0.4821 0.9076 28 1 -0.3633 0.5449 -0.8713 29 1 -0.3634 -1.0270 -0.0362 30 1 3.1613 1.4067 -0.0362 31 1 1.6913 1.9636 -0.8713 32 1 1.7500 1.9414 0.9076 33 1 1.3108 -1.4684 1.5839 34 1 2.3926 -0.1095 1.9902 35 1 3.9511 -2.3620 -2.4383 36 1 3.1977 -3.3547 -1.1674 37 1 5.9982 -2.1457 -1.0558 38 1 5.2449 -3.1385 0.2150 39 1 5.1574 -4.5816 -2.2113 40 1 7.6513 -8.8225 -4.0484 41 1 9.6137 -8.3737 -2.5302 42 1 12.2106 -7.3346 -2.2231 43 1 2.2216 -0.1618 -2.0796 44 1 1.4394 -1.6502 -1.4460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894493469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:44 Heat of formation + Delta-G solvation = -84.511161 kcal Electronic energy + Delta-G solvation = -24434.379906 eV Core-core repulsion = 20862.947754 eV Total energy + Delta-G solvation = -3571.432153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18249 -38.22577 -36.08861 -35.05430 -34.20820 -33.01932 -31.80778 -29.09817 -28.18483 -27.72744 -26.37621 -25.84894 -23.27217 -21.83336 -21.14142 -19.85988 -19.57013 -18.71357 -17.47138 -16.69873 -15.98759 -15.65868 -15.40002 -15.03389 -14.63244 -14.52630 -14.31824 -13.99413 -13.69796 -13.57876 -13.49153 -12.99112 -12.74343 -12.43522 -12.31012 -12.08330 -11.95640 -11.82703 -11.66581 -11.45534 -11.42873 -11.20760 -11.11772 -11.00643 -10.90814 -10.75936 -10.52118 -10.36260 -10.08616 -9.61784 -9.57598 -9.22410 -8.36881 -8.13543 -7.44752 -7.10599 -7.00807 -4.48489 2.19713 2.97555 3.02587 3.13342 3.16223 3.66829 3.67663 3.83954 3.89678 4.02664 4.16823 4.43096 4.51163 4.56571 4.80750 4.92123 4.97840 5.19850 5.25793 5.28924 5.31474 5.36069 5.38249 5.48888 5.55107 5.57605 5.62298 5.75455 5.76773 5.82235 5.92427 6.01726 6.06888 6.31143 6.38729 6.75150 6.88299 6.96520 7.20290 7.24170 7.40540 7.52459 7.75177 8.41289 8.51831 8.65441 8.84802 9.67330 9.90427 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.002627 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.196558 B =10655.234076 C =11879.248431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 C -0.139 4.139 4 C 0.059 3.941 5 O -0.373 6.373 6 C 0.087 3.913 7 H 0.073 0.927 8 C -0.129 4.129 9 C 0.132 3.868 10 N -0.752 5.752 11 C 0.600 3.400 12 O -0.564 6.564 13 C -0.429 4.429 14 S -0.053 6.053 15 C -0.207 4.207 16 C -0.099 4.099 17 C 0.140 3.860 18 C -0.377 4.377 19 H 0.112 0.888 20 C 0.067 3.933 21 N -0.779 5.779 22 Si 0.924 3.076 23 H -0.252 1.252 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.142 4.142 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.388 0.612 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.287 0.713 43 H 0.083 0.917 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.390 10.049 0.454 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 C -0.196 4.196 4 C -0.018 4.018 5 O -0.292 6.292 6 C 0.029 3.971 7 H 0.091 0.909 8 C -0.167 4.167 9 C 0.008 3.992 10 N -0.406 5.406 11 C 0.396 3.604 12 O -0.447 6.447 13 C -0.548 4.548 14 S 0.202 5.798 15 C -0.340 4.340 16 C -0.131 4.131 17 C 0.128 3.872 18 C -0.408 4.408 19 H 0.130 0.870 20 C -0.155 4.155 21 N -0.404 5.404 22 Si 0.747 3.253 23 H -0.176 1.176 24 H -0.195 1.195 25 H -0.195 1.195 26 C -0.180 4.180 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.221 0.779 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.943 10.415 0.404 19.047 hybrid contribution 1.499 -0.238 0.427 1.577 sum -14.444 10.176 0.831 17.688 Atomic orbital electron populations 1.21750 0.93244 1.02197 1.02081 1.22149 0.96574 0.96204 0.95358 1.21833 1.01386 0.94336 1.02057 1.23238 0.88726 0.94067 0.95761 1.88494 1.48924 1.66894 1.24906 1.22897 0.96129 0.96686 0.81412 0.90888 1.21946 0.97678 0.97244 0.99795 1.21008 0.93164 0.87702 0.97370 1.45837 1.20550 1.29007 1.45159 1.16840 0.79574 0.82595 0.81361 1.90652 1.54451 1.63817 1.35752 1.22613 1.05481 1.08272 1.18407 1.82662 1.25008 1.26756 1.45387 1.24934 0.99055 1.03428 1.06630 1.21732 0.97495 0.97923 0.95934 1.17946 0.90580 0.88860 0.89767 1.20076 0.90074 1.22547 1.08121 0.87008 1.26382 1.00579 0.92121 0.96378 1.69681 1.19278 1.27613 1.23834 0.85973 0.79072 0.79091 0.81154 1.17559 1.19504 1.19545 1.23431 0.96564 1.00134 0.97840 0.92323 0.92209 0.92206 0.92117 0.92224 0.92241 0.91423 0.91553 0.90271 0.90701 0.92644 0.91695 0.77882 0.84520 0.83743 0.90208 0.89849 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.50 37.16 0.32 -0.55 16 2 C -0.10 -0.81 0.94 -152.51 -0.14 -0.95 16 3 C -0.14 -0.99 8.46 37.16 0.31 -0.67 16 4 C 0.06 0.58 6.99 37.88 0.26 0.85 16 5 O -0.37 -4.97 10.75 -35.23 -0.38 -5.35 16 6 C 0.09 0.98 3.12 -25.71 -0.08 0.90 16 7 H 0.07 0.82 7.77 -51.93 -0.40 0.42 16 8 C -0.13 -1.63 5.06 -26.73 -0.14 -1.77 16 9 C 0.13 2.30 5.60 -4.04 -0.02 2.27 16 10 N -0.75 -15.26 5.55 -61.75 -0.34 -15.61 16 11 C 0.60 15.31 7.76 -13.05 -0.10 15.20 16 12 O -0.56 -16.08 14.45 5.14 0.07 -16.01 16 13 C -0.43 -11.16 6.51 -35.88 -0.23 -11.39 16 14 S -0.05 -1.15 22.25 -107.50 -2.39 -3.55 16 15 C -0.21 -4.57 11.07 28.86 0.32 -4.25 16 16 C -0.10 -2.44 9.04 -39.12 -0.35 -2.79 16 17 C 0.14 3.81 5.67 -106.21 -0.60 3.21 16 18 C -0.38 -10.42 8.52 -37.94 -0.32 -10.74 16 19 H 0.11 3.26 6.04 -52.49 -0.32 2.94 16 20 C 0.07 1.66 5.39 -17.28 -0.09 1.57 16 21 N -0.78 -19.16 10.82 55.57 0.60 -18.55 16 22 Si 0.92 18.92 29.57 -169.99 -5.03 13.90 16 23 H -0.25 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 C -0.14 -1.22 5.54 -24.42 -0.14 -1.35 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.39 8.12 -51.93 -0.42 -0.04 16 30 H 0.06 0.48 7.53 -51.93 -0.39 0.09 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.07 0.62 7.81 -51.93 -0.41 0.22 16 34 H 0.07 0.61 7.84 -51.93 -0.41 0.21 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.25 7.95 -51.93 -0.41 0.84 16 39 H 0.39 7.10 7.55 -40.82 -0.31 6.79 16 40 H 0.14 2.55 8.06 -52.48 -0.42 2.13 16 41 H 0.15 3.54 6.41 -52.49 -0.34 3.21 16 42 H 0.29 6.28 8.29 -40.82 -0.34 5.95 16 43 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 44 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -30.69 369.24 -9.66 -40.35 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.75 Total: 9.72 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.01 Total: -10.46 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.26 Total: -34.16 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.30 Total: -21.36 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.90 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.39 Total: -3.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.69 -9.66 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894493469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.159 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds