Wall clock time and date at job start Tue Mar 31 2020 14:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.75310 * 2 1 4 4 C 1.54376 * 110.84780 * 123.47510 * 2 1 3 5 5 O 1.43239 * 107.58897 * 139.54821 * 4 2 1 6 6 C 1.43655 * 109.96929 * 1.70704 * 5 4 2 7 7 H 1.09004 * 110.30267 * 94.59301 * 6 5 4 8 8 C 1.53000 * 110.30789 * 216.65897 * 6 5 4 9 9 C 1.53004 * 109.47239 * 292.21098 * 8 6 5 10 10 N 1.46501 * 109.46913 * 180.02562 * 9 8 6 11 11 C 1.34778 * 119.99565 * 180.02562 * 10 9 8 12 12 O 1.21752 * 120.00270 * 359.97438 * 11 10 9 13 13 C 1.46238 * 119.99660 * 179.97438 * 11 10 9 14 14 S 1.75668 * 125.22967 * 0.02562 * 13 11 10 15 15 C 1.75473 * 92.09212 * 179.97438 * 14 13 11 16 16 C 1.32761 * 111.36604 * 0.02562 * 15 14 13 17 17 C 1.39551 * 125.22668 * 179.72103 * 13 11 10 18 18 C 1.40528 * 123.71580 * 0.02562 * 17 13 11 19 19 H 1.08000 * 120.00215 * 23.44280 * 18 17 13 20 20 C 1.40306 * 120.00000 * 203.44265 * 18 17 13 21 21 N 1.30636 * 120.00198 * 9.79647 * 20 18 17 22 22 Si 1.86803 * 119.99946 * 189.79592 * 20 18 17 23 23 H 1.48507 * 109.47134 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47283 * 119.99854 * 22 20 18 25 25 H 1.48501 * 109.47337 * 240.00050 * 22 20 18 26 26 C 1.54940 * 105.22179 * 335.62479 * 6 5 4 27 27 H 1.09001 * 109.46804 * 297.97826 * 1 2 3 28 28 H 1.09002 * 109.46950 * 57.97667 * 1 2 3 29 29 H 1.09000 * 109.47546 * 177.98125 * 1 2 3 30 30 H 1.08998 * 109.47674 * 182.02075 * 3 2 1 31 31 H 1.09005 * 109.47296 * 302.02513 * 3 2 1 32 32 H 1.09009 * 109.47241 * 62.02026 * 3 2 1 33 33 H 1.08997 * 109.83570 * 20.03146 * 4 2 1 34 34 H 1.09001 * 109.90581 * 259.09797 * 4 2 1 35 35 H 1.08996 * 109.46904 * 172.21062 * 8 6 5 36 36 H 1.08998 * 109.47036 * 52.21346 * 8 6 5 37 37 H 1.08995 * 109.46807 * 300.00081 * 9 8 6 38 38 H 1.08996 * 109.47203 * 60.00146 * 9 8 6 39 39 H 0.96996 * 120.00370 * 359.97438 * 10 9 8 40 40 H 1.08007 * 124.31414 * 180.02562 * 15 14 13 41 41 H 1.07991 * 122.78513 * 179.97438 * 16 15 14 42 42 H 0.97006 * 119.99840 * 180.02562 * 21 20 18 43 43 H 1.09000 * 111.12075 * 154.31012 * 26 6 5 44 44 H 1.08996 * 111.12554 * 278.47476 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0721 1.4307 0.0000 4 6 2.0794 -0.7957 1.2034 5 8 3.2044 -1.5539 0.7437 6 6 3.4463 -1.2795 -0.6455 7 1 4.1948 -0.4941 -0.7512 8 6 3.9049 -2.5493 -1.3655 9 6 5.2911 -2.9512 -0.8577 10 7 5.7303 -4.1667 -1.5476 11 6 6.9301 -4.7089 -1.2594 12 8 7.6490 -4.1883 -0.4260 13 6 7.3683 -5.9225 -1.9476 14 16 6.4456 -6.7839 -3.1692 15 6 7.7061 -7.9892 -3.3635 16 6 8.7356 -7.7460 -2.5613 17 6 8.5864 -6.5708 -1.7392 18 6 9.5586 -6.1294 -0.8256 19 1 9.2719 -5.5083 0.0102 20 6 10.9019 -6.4956 -0.9991 21 7 11.2820 -7.0811 -2.1033 22 14 12.1469 -6.1460 0.3490 23 1 11.4679 -5.4795 1.4892 24 1 12.7500 -7.4226 0.8091 25 1 13.2127 -5.2573 -0.1798 26 6 2.0839 -0.8037 -1.2094 27 1 -0.3633 0.4821 0.9076 28 1 -0.3633 0.5449 -0.8713 29 1 -0.3634 -1.0270 -0.0362 30 1 3.1613 1.4067 -0.0362 31 1 1.6913 1.9636 -0.8713 32 1 1.7500 1.9414 0.9076 33 1 1.3108 -1.4684 1.5839 34 1 2.3926 -0.1095 1.9902 35 1 3.9511 -2.3620 -2.4383 36 1 3.1977 -3.3547 -1.1674 37 1 5.9982 -2.1457 -1.0558 38 1 5.2449 -3.1385 0.2150 39 1 5.1574 -4.5816 -2.2113 40 1 7.6513 -8.8225 -4.0484 41 1 9.6137 -8.3737 -2.5302 42 1 12.2106 -7.3346 -2.2231 43 1 2.2216 -0.1618 -2.0796 44 1 1.4394 -1.6502 -1.4460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894493469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:43 Heat of formation + Delta-G solvation = -103.458280 kcal Electronic energy + Delta-G solvation = -24435.201515 eV Core-core repulsion = 20862.947754 eV Total energy + Delta-G solvation = -3572.253761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01328 -40.10936 -37.93126 -36.28657 -35.35517 -34.91837 -33.13011 -30.90084 -29.46314 -28.25883 -27.78100 -26.91452 -24.70360 -23.52284 -22.19445 -21.63640 -20.64058 -20.28836 -19.24924 -17.70270 -17.59974 -17.24210 -16.74608 -16.24357 -16.11268 -15.94651 -15.58467 -15.34571 -14.92659 -14.76805 -14.23146 -14.18353 -14.09540 -13.91228 -13.79013 -13.60634 -13.17069 -13.00052 -12.97601 -12.76429 -12.75137 -12.51851 -12.29265 -12.23102 -12.10695 -12.01694 -11.66150 -11.61371 -11.42964 -11.31538 -11.07022 -10.48696 -10.36682 -9.94922 -9.35233 -8.94188 -8.86699 -6.46141 0.30112 1.31526 1.33367 1.36793 1.48820 1.77383 1.96743 2.17581 2.53764 2.54925 2.86015 3.30804 3.40613 3.68674 3.83777 3.97467 4.07805 4.16962 4.26358 4.34988 4.37522 4.48878 4.63241 4.71130 4.73415 4.80123 4.83085 4.84887 4.96151 4.99105 5.00629 5.05190 5.12176 5.18194 5.19422 5.27770 5.31196 5.39196 5.43950 5.56961 5.73185 5.83974 6.12219 6.39675 6.57116 6.72024 6.97844 7.73587 8.06888 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.002627 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.196558 B =10655.234076 C =11879.248431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.138 4.138 4 C 0.050 3.950 5 O -0.407 6.407 6 C 0.082 3.918 7 H 0.070 0.930 8 C -0.115 4.115 9 C 0.133 3.867 10 N -0.736 5.736 11 C 0.588 3.412 12 O -0.607 6.607 13 C -0.469 4.469 14 S 0.012 5.988 15 C -0.190 4.190 16 C -0.129 4.129 17 C 0.111 3.889 18 C -0.418 4.418 19 H 0.081 0.919 20 C 0.035 3.965 21 N -0.792 5.792 22 Si 0.989 3.011 23 H -0.272 1.272 24 H -0.246 1.246 25 H -0.258 1.258 26 C -0.134 4.134 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.400 0.600 40 H 0.179 0.821 41 H 0.142 0.858 42 H 0.301 0.699 43 H 0.101 0.899 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.855 10.093 -1.097 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.097 4.097 3 C -0.196 4.196 4 C -0.027 4.027 5 O -0.327 6.327 6 C 0.024 3.976 7 H 0.088 0.912 8 C -0.153 4.153 9 C 0.010 3.990 10 N -0.388 5.388 11 C 0.384 3.616 12 O -0.493 6.493 13 C -0.588 4.588 14 S 0.268 5.732 15 C -0.324 4.324 16 C -0.162 4.162 17 C 0.100 3.900 18 C -0.448 4.448 19 H 0.099 0.901 20 C -0.185 4.185 21 N -0.417 5.417 22 Si 0.809 3.191 23 H -0.197 1.197 24 H -0.169 1.169 25 H -0.182 1.182 26 C -0.172 4.172 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.235 0.765 40 H 0.196 0.804 41 H 0.159 0.841 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.466 10.454 -1.193 20.390 hybrid contribution 1.865 -0.250 0.871 2.074 sum -15.600 10.205 -0.322 18.644 Atomic orbital electron populations 1.21733 0.91729 1.02472 1.03009 1.22140 0.97659 0.96099 0.93817 1.21838 1.00570 0.94071 1.03079 1.23437 0.88072 0.94320 0.96831 1.88464 1.50350 1.67830 1.26044 1.22961 0.97882 0.95746 0.80973 0.91233 1.21890 0.94212 0.98113 1.01087 1.21110 0.95914 0.86076 0.95950 1.45661 1.19003 1.29351 1.44818 1.17114 0.80645 0.82822 0.81026 1.90614 1.56074 1.65057 1.37582 1.23064 1.06571 1.09095 1.20037 1.82228 1.23199 1.25072 1.42720 1.25462 0.97814 1.03867 1.05295 1.21611 0.98932 0.97892 0.97745 1.18413 0.91225 0.89955 0.90435 1.20033 0.92144 1.24197 1.08455 0.90084 1.27049 1.01179 0.91705 0.98543 1.69649 1.20577 1.27006 1.24453 0.85051 0.76624 0.79863 0.77591 1.19669 1.16925 1.18216 1.23413 0.94565 1.00676 0.98515 0.91638 0.91056 0.92290 0.93411 0.90851 0.91590 0.91005 0.91451 0.87991 0.90262 0.93672 0.94226 0.76465 0.80415 0.84065 0.88736 0.88100 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.50 71.98 0.61 -0.74 16 2 C -0.10 -1.35 0.94 -50.88 -0.05 -1.40 16 3 C -0.14 -1.73 8.46 71.98 0.61 -1.12 16 4 C 0.05 0.96 6.99 72.45 0.51 1.46 16 5 O -0.41 -10.98 10.75 -148.98 -1.60 -12.58 16 6 C 0.08 1.81 3.12 31.26 0.10 1.91 16 7 H 0.07 1.56 7.77 -2.38 -0.02 1.55 16 8 C -0.12 -2.82 5.06 30.60 0.15 -2.66 16 9 C 0.13 4.78 5.60 86.38 0.48 5.26 16 10 N -0.74 -30.32 5.55 -467.48 -2.59 -32.92 16 11 C 0.59 31.16 7.76 86.32 0.67 31.83 16 12 O -0.61 -36.82 14.45 -4.51 -0.07 -36.88 16 13 C -0.47 -24.91 6.51 24.67 0.16 -24.75 16 14 S 0.01 0.51 22.25 -56.49 -1.26 -0.74 16 15 C -0.19 -8.02 11.07 66.64 0.74 -7.29 16 16 C -0.13 -6.42 9.04 22.61 0.20 -6.22 16 17 C 0.11 6.26 5.67 -20.89 -0.12 6.14 16 18 C -0.42 -24.24 8.52 23.33 0.20 -24.04 16 19 H 0.08 5.09 6.04 -2.91 -0.02 5.08 16 20 C 0.04 1.79 5.39 85.37 0.46 2.25 16 21 N -0.79 -39.14 10.82 21.89 0.24 -38.91 16 22 Si 0.99 39.52 29.57 68.60 2.03 41.54 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 26 C -0.13 -2.01 5.54 32.09 0.18 -1.83 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.05 0.72 7.53 -2.39 -0.02 0.70 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.07 1.29 7.81 -2.39 -0.02 1.27 16 34 H 0.07 1.24 7.84 -2.39 -0.02 1.22 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.62 7.95 -2.39 -0.02 1.60 16 39 H 0.40 14.32 7.55 -92.71 -0.70 13.62 16 40 H 0.18 5.93 8.06 -2.91 -0.02 5.90 16 41 H 0.14 6.98 6.41 -2.92 -0.02 6.96 16 42 H 0.30 13.00 8.29 -92.70 -0.77 12.23 16 43 H 0.10 1.18 8.04 -2.39 -0.02 1.16 16 44 H 0.09 1.22 7.94 -2.39 -0.02 1.20 16 Total: -1.00 -70.44 369.24 1.96 -68.48 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.31 Total: 33.19 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 4.91 Total: -21.19 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -2.36 Total: -71.82 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.67 Total: -49.46 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -1.26 Total: -0.74 kcal Total: -70.44 1.96 -68.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894493469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.978 kcal (2) G-P(sol) polarization free energy of solvation -70.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds