Wall clock time and date at job start Tue Mar 31 2020 13:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99752 * 2 1 4 4 H 1.48501 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47105 * 240.00259 * 3 2 1 6 6 H 1.48504 * 109.46895 * 120.00016 * 3 2 1 7 7 C 1.37874 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00073 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47388 * 300.00026 * 9 7 2 11 11 O 1.42898 * 109.47292 * 59.99606 * 9 7 2 12 12 C 1.53001 * 109.47142 * 179.97438 * 9 7 2 13 13 N 1.46904 * 109.46836 * 173.64503 * 12 9 7 14 14 C 1.46899 * 111.00025 * 77.55787 * 13 12 9 15 15 C 1.50698 * 109.47344 * 195.35762 * 14 13 12 16 16 C 1.33388 * 125.20431 * 92.90042 * 15 14 13 17 17 C 1.38429 * 114.92379 * 179.97438 * 16 15 14 18 18 C 1.33386 * 114.91510 * 0.02562 * 17 16 15 19 19 S 1.75885 * 125.20242 * 272.60328 * 15 14 13 20 20 C 1.46900 * 110.99932 * 201.50732 * 13 12 9 21 21 H 1.09002 * 110.34977 * 185.21934 * 20 13 12 22 22 C 1.51104 * 110.38564 * 62.93173 * 20 13 12 23 23 C 1.30530 * 111.10208 * 224.74975 * 22 20 13 24 24 C 1.51098 * 111.10731 * 0.02562 * 23 22 20 25 25 H 1.09005 * 110.38080 * 257.62319 * 24 23 22 26 26 C 1.53002 * 110.38734 * 135.35931 * 24 23 22 27 27 O 1.42897 * 109.47084 * 63.26090 * 26 24 23 28 28 C 1.54639 * 110.38940 * 307.50814 * 20 13 12 29 29 H 0.96998 * 119.99904 * 180.02562 * 1 2 3 30 30 H 0.96701 * 113.99903 * 59.99897 * 11 9 7 31 31 H 1.08997 * 109.47352 * 293.64104 * 12 9 7 32 32 H 1.08993 * 109.47097 * 53.65049 * 12 9 7 33 33 H 1.08997 * 109.47023 * 315.35428 * 14 13 12 34 34 H 1.09004 * 109.47207 * 75.35356 * 14 13 12 35 35 H 1.08001 * 122.54152 * 359.96697 * 16 15 14 36 36 H 1.07994 * 122.54050 * 179.97438 * 17 16 15 37 37 H 1.08010 * 125.19837 * 179.97438 * 18 17 16 38 38 H 1.08005 * 124.44711 * 44.77458 * 22 20 13 39 39 H 1.08007 * 124.43954 * 180.02562 * 23 22 20 40 40 H 1.09002 * 109.46774 * 183.26015 * 26 24 23 41 41 H 1.09000 * 109.46604 * 303.25835 * 26 24 23 42 42 H 0.96700 * 113.99930 * 180.02562 * 27 26 24 43 43 H 1.08998 * 111.03767 * 261.47797 * 28 20 13 44 44 H 1.09006 * 111.03242 * 25.41278 * 28 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6241 -2.5575 0.8880 11 8 0.4300 -2.5741 -1.1688 12 6 2.2454 -3.6620 -0.0027 13 7 1.5174 -4.9288 0.1494 14 6 0.8884 -5.3298 -1.1161 15 6 -0.1397 -6.3990 -0.8495 16 6 -1.4374 -6.1806 -0.6316 17 6 -2.1914 -7.3201 -0.4097 18 6 -1.5058 -8.4637 -0.4470 19 16 0.1868 -8.1260 -0.7854 20 6 2.4018 -5.9867 0.6561 21 1 1.8767 -6.9417 0.6777 22 6 2.9088 -5.6334 2.0350 23 6 4.1889 -5.8664 2.1390 24 6 4.7492 -6.4134 0.8467 25 1 4.8946 -7.4911 0.9220 26 6 6.0696 -5.7211 0.5030 27 8 7.0364 -6.0100 1.5147 28 6 3.6730 -6.0908 -0.2182 29 1 -0.4850 -0.8400 0.0004 30 1 0.9224 -2.5281 -1.9998 31 1 2.7948 -3.6695 -0.9441 32 1 2.9445 -3.5431 0.8250 33 1 0.4043 -4.4657 -1.5710 34 1 1.6494 -5.7182 -1.7930 35 1 -1.8673 -5.1899 -0.6283 36 1 -3.2540 -7.2857 -0.2200 37 1 -1.9266 -9.4470 -0.2966 38 1 2.2927 -5.2401 2.8302 39 1 4.7711 -5.6912 3.0317 40 1 6.4307 -6.0846 -0.4591 41 1 5.9115 -4.6440 0.4483 42 1 7.8997 -5.6020 1.3618 43 1 3.5836 -6.8988 -0.9443 44 1 3.8857 -5.1434 -0.7138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930480612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:51 Heat of formation + Delta-G solvation = -41.056034 kcal Electronic energy + Delta-G solvation = -25876.660253 eV Core-core repulsion = 22307.112456 eV Total energy + Delta-G solvation = -3569.547797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.87799 -37.79619 -37.00485 -36.12943 -34.39199 -32.13864 -30.65419 -29.85832 -28.63324 -27.10877 -25.36451 -24.30585 -23.22141 -22.01767 -21.35486 -19.64829 -19.08629 -18.38826 -17.36079 -17.23697 -16.91215 -16.17915 -15.77146 -15.15235 -15.10878 -14.64364 -14.34367 -13.86816 -13.78495 -13.59875 -13.24838 -12.73839 -12.54051 -12.42852 -12.25544 -12.19421 -11.98282 -11.75340 -11.55554 -11.41340 -11.26061 -11.07435 -10.85883 -10.81534 -10.69918 -10.52849 -10.12861 -10.03734 -9.98465 -9.28213 -8.85452 -8.51253 -8.44866 -8.29204 -8.09243 -7.69352 -6.35180 -4.18919 1.16223 1.78417 2.13650 2.44362 2.96337 3.40682 3.42087 3.61199 4.07934 4.36631 4.53819 4.69732 4.79135 5.02817 5.07423 5.17416 5.23413 5.32387 5.35338 5.40491 5.49141 5.54783 5.68744 5.71255 5.76806 5.80467 5.89960 5.92628 6.02750 6.10612 6.25817 6.28832 6.34616 6.43885 6.57691 6.67580 6.70847 6.77322 6.98863 7.34728 7.50989 7.54686 7.67288 8.02652 8.34800 8.85978 9.05836 9.66476 11.05010 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008444 B = 0.005289 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.098622 B = 5292.654506 C = 8142.959215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.037 3.963 3 Si 1.064 2.936 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.649 4.649 8 H 0.046 0.954 9 C 0.221 3.779 10 H 0.058 0.942 11 O -0.576 6.576 12 C 0.043 3.957 13 N -0.515 5.515 14 C 0.105 3.895 15 C -0.141 4.141 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.224 4.224 19 S 0.062 5.938 20 C 0.096 3.904 21 H 0.092 0.908 22 C -0.138 4.138 23 C -0.162 4.162 24 C -0.060 4.060 25 H 0.083 0.917 26 C 0.084 3.916 27 O -0.573 6.573 28 C -0.156 4.156 29 H 0.285 0.715 30 H 0.348 0.652 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.033 0.967 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.042 0.958 41 H 0.049 0.951 42 H 0.376 0.624 43 H 0.069 0.931 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -15.901 -1.639 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.172 4.172 3 Si 0.893 3.107 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.688 4.688 8 H 0.065 0.935 9 C 0.164 3.836 10 H 0.076 0.924 11 O -0.380 6.380 12 C -0.084 4.084 13 N -0.238 5.238 14 C -0.024 4.024 15 C -0.259 4.259 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.360 4.360 19 S 0.324 5.676 20 C -0.013 4.013 21 H 0.110 0.890 22 C -0.156 4.156 23 C -0.180 4.180 24 C -0.079 4.079 25 H 0.101 0.899 26 C 0.007 3.993 27 O -0.378 6.378 28 C -0.195 4.195 29 H 0.097 0.903 30 H 0.193 0.807 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.051 0.949 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.223 0.777 43 H 0.088 0.912 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.208 -15.474 -0.773 16.346 hybrid contribution 0.622 -0.720 -0.897 1.307 sum 5.830 -16.195 -1.669 17.293 Atomic orbital electron populations 1.70631 1.06890 1.32365 1.42647 1.25717 0.96484 1.02285 0.92758 0.83637 0.74994 0.75675 0.76443 1.20751 1.21540 1.21494 1.22390 0.94236 0.92551 1.59579 0.93525 1.19570 0.88532 0.90193 0.85264 0.92428 1.86480 1.39947 1.95444 1.16149 1.22915 0.97132 0.88905 0.99482 1.62176 1.31646 1.02641 1.27298 1.21107 0.93714 0.96559 0.90999 1.24519 0.98457 0.95404 1.07506 1.20235 0.92878 1.00182 1.02534 1.20217 1.01114 0.91640 1.02838 1.25483 0.96399 1.02320 1.11751 1.84113 1.09091 1.02888 1.71498 1.21785 0.91270 0.96091 0.92170 0.89011 1.23193 0.95913 0.98937 0.97554 1.23083 0.95609 1.01019 0.98315 1.20924 0.92960 1.00087 0.93885 0.89900 1.22221 0.88577 0.98819 0.89709 1.86469 1.24647 1.76899 1.49761 1.23260 0.95894 1.02457 0.97878 0.90285 0.80663 0.95617 0.90716 0.85349 0.94854 0.83736 0.84596 0.82472 0.85421 0.85619 0.93932 0.93221 0.77721 0.91235 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.53 55.43 0.75 -25.84 16 2 C 0.04 1.02 5.40 -17.82 -0.10 0.93 16 3 Si 1.06 24.55 29.90 -169.99 -5.08 19.46 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.65 -17.42 8.76 -34.44 -0.30 -17.72 16 8 H 0.05 1.24 7.74 -52.49 -0.41 0.83 16 9 C 0.22 5.31 2.65 -27.88 -0.07 5.23 16 10 H 0.06 1.57 8.01 -51.93 -0.42 1.15 16 11 O -0.58 -13.29 9.28 -35.23 -0.33 -13.62 16 12 C 0.04 0.84 3.47 -3.82 -0.01 0.82 16 13 N -0.52 -8.91 4.36 -228.20 -1.00 -9.91 16 14 C 0.11 1.70 5.17 -4.98 -0.03 1.67 16 15 C -0.14 -2.15 5.51 -36.00 -0.20 -2.35 16 16 C -0.13 -1.94 10.05 -41.21 -0.41 -2.35 16 17 C -0.13 -1.64 10.18 -41.21 -0.42 -2.06 16 18 C -0.22 -2.70 11.23 29.04 0.33 -2.37 16 19 S 0.06 0.80 21.60 -107.50 -2.32 -1.52 16 20 C 0.10 1.45 2.85 -67.81 -0.19 1.26 16 21 H 0.09 1.38 5.75 -51.93 -0.30 1.09 16 22 C -0.14 -2.11 8.86 -35.70 -0.32 -2.42 16 23 C -0.16 -2.28 9.85 -35.70 -0.35 -2.63 16 24 C -0.06 -0.77 3.20 -90.63 -0.29 -1.06 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 26 C 0.08 0.99 6.42 37.16 0.24 1.23 16 27 O -0.57 -6.55 13.40 -35.23 -0.47 -7.02 16 28 C -0.16 -2.09 5.17 -24.92 -0.13 -2.22 16 29 H 0.29 8.64 6.47 -40.82 -0.26 8.38 16 30 H 0.35 7.24 8.85 45.56 0.40 7.65 16 31 H 0.03 0.49 6.77 -51.93 -0.35 0.14 16 32 H 0.07 1.53 6.71 -51.93 -0.35 1.18 16 33 H 0.13 2.28 4.92 -51.93 -0.26 2.02 16 34 H 0.03 0.50 7.27 -51.93 -0.38 0.13 16 35 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.13 2.01 8.06 -52.48 -0.42 1.58 16 39 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.38 2.59 9.12 45.56 0.42 3.00 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.18 5.60 -51.93 -0.29 0.89 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -30.57 362.24 -10.04 -40.61 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -4.79 Total: 16.42 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -2.26 Total: -24.05 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.25 Total: -35.74 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.80 Total: -20.64 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.46 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.32 Total: -1.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.57 -10.04 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930480612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.443 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds