Wall clock time and date at job start Tue Mar 31 2020 13:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86794 * 120.00554 * 2 1 4 4 H 1.48499 * 109.47574 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47277 * 300.00612 * 3 2 1 6 6 H 1.48506 * 109.46693 * 60.00098 * 3 2 1 7 7 C 1.38662 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99877 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.35750 * 116.99884 * 185.06084 * 9 7 2 11 11 C 1.38896 * 120.07009 * 354.48442 * 10 9 7 12 12 C 1.38078 * 119.93532 * 179.97438 * 11 10 9 13 13 C 1.38326 * 120.06479 * 359.74606 * 12 11 10 14 14 C 1.38280 * 120.13586 * 0.51120 * 13 12 11 15 15 C 1.50700 * 119.96460 * 179.76568 * 14 13 12 16 16 N 1.46903 * 109.47352 * 269.72623 * 15 14 13 17 17 C 1.46903 * 111.00313 * 179.97438 * 16 15 14 18 18 C 1.50691 * 109.47050 * 179.97438 * 17 16 15 19 19 C 1.38748 * 119.79059 * 90.00068 * 18 17 16 20 20 C 1.37848 * 120.68776 * 179.97438 * 19 18 17 21 21 C 1.38944 * 119.81649 * 0.02562 * 20 19 18 22 22 O 1.34809 * 133.49679 * 180.02562 * 21 20 19 23 23 C 1.34457 * 110.88846 * 179.97438 * 22 21 20 24 24 C 1.33995 * 110.15455 * 359.97438 * 23 22 21 25 25 C 1.40489 * 119.22448 * 359.97438 * 21 20 19 26 26 C 1.36741 * 119.79431 * 270.02085 * 18 17 16 27 27 C 1.38118 * 120.06905 * 359.48825 * 14 13 12 28 28 H 0.97005 * 119.99542 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.03464 * 359.95887 * 11 10 9 30 30 H 1.08001 * 119.97052 * 180.02562 * 12 11 10 31 31 H 1.08000 * 119.93402 * 180.27411 * 13 12 11 32 32 H 1.09002 * 109.47574 * 149.72071 * 15 14 13 33 33 H 1.09010 * 109.47304 * 29.72141 * 15 14 13 34 34 H 1.00906 * 110.99556 * 303.95051 * 16 15 14 35 35 H 1.09000 * 109.47105 * 59.99712 * 17 16 15 36 36 H 1.08996 * 109.47107 * 299.99867 * 17 16 15 37 37 H 1.08002 * 119.65686 * 359.97412 * 19 18 17 38 38 H 1.07999 * 120.09455 * 179.97438 * 20 19 18 39 39 H 1.08003 * 124.91925 * 179.97438 * 23 22 21 40 40 H 1.08000 * 126.90392 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.14013 * 359.97438 * 26 18 17 42 42 H 1.08003 * 120.03173 * 180.23027 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 0.1056 11 6 3.4572 -3.4396 0.0926 12 6 4.2023 -4.5970 0.2013 13 6 3.5684 -5.8199 0.3283 14 6 2.1874 -5.8885 0.3363 15 6 1.5008 -7.2234 0.4696 16 7 1.2707 -7.7912 -0.8656 17 6 0.6020 -9.0961 -0.7747 18 6 0.3827 -9.6457 -2.1606 19 6 1.3545 -10.4433 -2.7476 20 6 1.1729 -10.9562 -4.0142 21 6 0.0061 -10.6732 -4.7134 22 8 -0.4512 -11.0182 -5.9337 23 6 -1.6640 -10.4836 -6.1600 24 6 -2.0571 -9.7652 -5.0994 25 6 -0.9741 -9.8651 -4.1136 26 6 -0.7725 -9.3550 -2.8319 27 6 1.4365 -4.7343 0.2279 28 1 -0.4850 0.8401 0.0004 29 1 3.9527 -2.4847 -0.0026 30 1 5.2811 -4.5470 0.1917 31 1 4.1534 -6.7234 0.4177 32 1 0.5456 -7.0917 0.9779 33 1 2.1302 -7.8996 1.0483 34 1 0.7435 -7.1539 -1.4436 35 1 -0.3593 -8.9777 -0.2749 36 1 1.2255 -9.7849 -0.2048 37 1 2.2627 -10.6646 -2.2066 38 1 1.9359 -11.5756 -4.4621 39 1 -2.2382 -10.6144 -7.0653 40 1 -2.9843 -9.2220 -4.9915 41 1 -1.5260 -8.7338 -2.3707 42 1 0.3579 -4.7882 0.2379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117110396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:27 Heat of formation + Delta-G solvation = 29.071032 kcal Electronic energy + Delta-G solvation = -24767.654191 eV Core-core repulsion = 21065.703380 eV Total energy + Delta-G solvation = -3701.950810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.59558 -39.12537 -38.61398 -36.91759 -35.30726 -32.98721 -32.30061 -31.78338 -29.96864 -29.49506 -28.91089 -26.19245 -25.24813 -23.86883 -23.00708 -21.58846 -21.52003 -21.43774 -20.61858 -17.78260 -17.64524 -17.29009 -16.93556 -16.27232 -15.64743 -15.50358 -15.02913 -14.82416 -14.46468 -14.37170 -14.33183 -13.83519 -13.64921 -13.48501 -13.30818 -12.90708 -12.84200 -12.52615 -12.34906 -12.02795 -11.80316 -11.65741 -11.55137 -11.24843 -11.10486 -10.80326 -10.65947 -10.58182 -10.40616 -10.40036 -9.32695 -8.83844 -8.76975 -8.45838 -8.34425 -8.04636 -7.20977 -6.43695 -4.02741 0.74761 1.14098 2.12295 2.17402 2.41041 2.59698 3.12869 3.14470 3.19945 3.48470 3.97530 4.19367 4.37185 4.46907 4.63318 4.75112 4.84197 4.99212 5.08273 5.11179 5.17608 5.22296 5.29837 5.33956 5.45294 5.54085 5.59434 5.69788 5.78455 5.86397 5.98788 6.00772 6.03008 6.19486 6.21057 6.34315 6.40546 6.44763 6.67091 6.91817 6.95320 7.02331 7.09094 7.28203 7.40165 7.44405 7.45257 7.84352 8.01591 9.02452 9.72998 10.74670 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015037 B = 0.002270 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.679770 B =12333.970547 C =13442.774111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.181 6.181 10 C 0.152 3.848 11 C -0.230 4.230 12 C -0.078 4.078 13 C -0.188 4.188 14 C -0.047 4.047 15 C 0.106 3.894 16 N -0.679 5.679 17 C 0.100 3.900 18 C -0.093 4.093 19 C -0.068 4.068 20 C -0.110 4.110 21 C 0.049 3.951 22 O -0.198 6.198 23 C 0.002 3.998 24 C -0.208 4.208 25 C -0.134 4.134 26 C -0.064 4.064 27 C -0.185 4.185 28 H 0.269 0.731 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.347 0.653 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.207 0.793 40 H 0.157 0.843 41 H 0.126 0.874 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.849 -21.219 -6.335 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.099 3.901 11 C -0.250 4.250 12 C -0.096 4.096 13 C -0.207 4.207 14 C -0.048 4.048 15 C -0.022 4.022 16 N -0.310 5.310 17 C -0.029 4.029 18 C -0.094 4.094 19 C -0.087 4.087 20 C -0.129 4.129 21 C 0.002 3.998 22 O -0.100 6.100 23 C -0.063 4.063 24 C -0.227 4.227 25 C -0.134 4.134 26 C -0.082 4.082 27 C -0.205 4.205 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.223 0.777 40 H 0.175 0.825 41 H 0.144 0.856 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.504 -21.442 -6.559 22.429 hybrid contribution -0.593 1.350 0.137 1.481 sum -1.097 -20.092 -6.422 21.122 Atomic orbital electron populations 1.70049 1.05942 1.27467 1.46521 1.25278 0.95838 0.98795 0.96651 0.85655 0.79149 0.80445 0.78224 1.19115 1.20168 1.20175 1.21363 0.91800 0.80834 1.52695 0.89071 1.83975 1.34265 1.11398 1.78799 1.19303 0.90269 0.88003 0.92515 1.21197 0.93844 0.99015 1.10916 1.20751 0.98451 0.92417 0.97984 1.20419 0.93466 0.96804 1.10058 1.19140 0.93526 0.92568 0.99578 1.20817 0.98439 0.93220 0.89761 1.60566 1.52740 1.04107 1.13635 1.20861 0.97593 0.92114 0.92337 1.19412 0.94092 0.98947 0.96922 1.20831 0.98622 0.95735 0.93463 1.19924 0.94728 1.03752 0.94464 1.19675 0.96580 0.99128 0.84442 1.83996 1.31416 1.62807 1.31733 1.23939 0.84661 0.97153 1.00537 1.22553 1.00769 1.05616 0.93806 1.19915 0.95332 1.01942 0.96258 1.20196 0.97406 0.98369 0.92258 1.20026 0.99057 0.90123 1.11284 0.92142 0.85662 0.87494 0.87584 0.94580 0.90482 0.83455 0.94315 0.89992 0.84510 0.85067 0.77675 0.82488 0.85637 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.66 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.39 -10.99 9.49 30.89 0.29 -10.69 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.18 9.76 0.05 0.00 -5.18 16 10 C 0.15 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.23 -5.07 9.17 -39.40 -0.36 -5.43 16 12 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 13 C -0.19 -3.29 9.70 -39.53 -0.38 -3.67 16 14 C -0.05 -0.84 5.39 -104.65 -0.56 -1.40 16 15 C 0.11 1.45 5.81 -4.97 -0.03 1.42 16 16 N -0.68 -8.77 6.48 -116.33 -0.75 -9.52 16 17 C 0.10 1.03 5.80 -4.98 -0.03 1.00 16 18 C -0.09 -1.01 5.36 -104.98 -0.56 -1.57 16 19 C -0.07 -0.69 9.66 -39.54 -0.38 -1.07 16 20 C -0.11 -1.14 10.07 -39.46 -0.40 -1.54 16 21 C 0.05 0.58 7.42 -38.47 -0.29 0.29 16 22 O -0.20 -2.19 10.58 3.89 0.04 -2.15 16 23 C 0.00 0.02 11.96 29.24 0.35 0.36 16 24 C -0.21 -1.99 11.14 -37.62 -0.42 -2.41 16 25 C -0.13 -1.57 6.40 -105.16 -0.67 -2.24 16 26 C -0.06 -0.71 9.68 -39.69 -0.38 -1.10 16 27 C -0.18 -3.88 9.65 -39.40 -0.38 -4.26 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 30 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.08 0.95 8.08 -51.92 -0.42 0.53 16 34 H 0.35 4.82 8.72 -39.29 -0.34 4.48 16 35 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.21 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.11 2.29 8.06 -52.48 -0.42 1.86 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -32.49 364.88 -9.55 -42.03 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.11 Total: 8.15 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -4.96 Total: -29.76 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.00 Total: -34.23 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.04 Total: -7.33 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.49 -9.55 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117110396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.105 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds