Wall clock time and date at job start Tue Mar 31 2020 13:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86794 * 120.00554 * 2 1 4 4 H 1.48499 * 109.47574 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47277 * 300.00612 * 3 2 1 6 6 H 1.48506 * 109.46693 * 60.00098 * 3 2 1 7 7 C 1.38662 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99877 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.35750 * 116.99884 * 185.06084 * 9 7 2 11 11 C 1.38896 * 120.07009 * 354.48442 * 10 9 7 12 12 C 1.38078 * 119.93532 * 179.97438 * 11 10 9 13 13 C 1.38326 * 120.06479 * 359.74606 * 12 11 10 14 14 C 1.38280 * 120.13586 * 0.51120 * 13 12 11 15 15 C 1.50700 * 119.96460 * 179.76568 * 14 13 12 16 16 N 1.46903 * 109.47352 * 269.72623 * 15 14 13 17 17 C 1.46903 * 111.00313 * 179.97438 * 16 15 14 18 18 C 1.50691 * 109.47050 * 179.97438 * 17 16 15 19 19 C 1.38748 * 119.79059 * 90.00068 * 18 17 16 20 20 C 1.37848 * 120.68776 * 179.97438 * 19 18 17 21 21 C 1.38944 * 119.81649 * 0.02562 * 20 19 18 22 22 O 1.34809 * 133.49679 * 180.02562 * 21 20 19 23 23 C 1.34457 * 110.88846 * 179.97438 * 22 21 20 24 24 C 1.33995 * 110.15455 * 359.97438 * 23 22 21 25 25 C 1.40489 * 119.22448 * 359.97438 * 21 20 19 26 26 C 1.36741 * 119.79431 * 270.02085 * 18 17 16 27 27 C 1.38118 * 120.06905 * 359.48825 * 14 13 12 28 28 H 0.97005 * 119.99542 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.03464 * 359.95887 * 11 10 9 30 30 H 1.08001 * 119.97052 * 180.02562 * 12 11 10 31 31 H 1.08000 * 119.93402 * 180.27411 * 13 12 11 32 32 H 1.09002 * 109.47574 * 149.72071 * 15 14 13 33 33 H 1.09010 * 109.47304 * 29.72141 * 15 14 13 34 34 H 1.00906 * 110.99556 * 303.95051 * 16 15 14 35 35 H 1.09000 * 109.47105 * 59.99712 * 17 16 15 36 36 H 1.08996 * 109.47107 * 299.99867 * 17 16 15 37 37 H 1.08002 * 119.65686 * 359.97412 * 19 18 17 38 38 H 1.07999 * 120.09455 * 179.97438 * 20 19 18 39 39 H 1.08003 * 124.91925 * 179.97438 * 23 22 21 40 40 H 1.08000 * 126.90392 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.14013 * 359.97438 * 26 18 17 42 42 H 1.08003 * 120.03173 * 180.23027 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 0.1056 11 6 3.4572 -3.4396 0.0926 12 6 4.2023 -4.5970 0.2013 13 6 3.5684 -5.8199 0.3283 14 6 2.1874 -5.8885 0.3363 15 6 1.5008 -7.2234 0.4696 16 7 1.2707 -7.7912 -0.8656 17 6 0.6020 -9.0961 -0.7747 18 6 0.3827 -9.6457 -2.1606 19 6 1.3545 -10.4433 -2.7476 20 6 1.1729 -10.9562 -4.0142 21 6 0.0061 -10.6732 -4.7134 22 8 -0.4512 -11.0182 -5.9337 23 6 -1.6640 -10.4836 -6.1600 24 6 -2.0571 -9.7652 -5.0994 25 6 -0.9741 -9.8651 -4.1136 26 6 -0.7725 -9.3550 -2.8319 27 6 1.4365 -4.7343 0.2279 28 1 -0.4850 0.8401 0.0004 29 1 3.9527 -2.4847 -0.0026 30 1 5.2811 -4.5470 0.1917 31 1 4.1534 -6.7234 0.4177 32 1 0.5456 -7.0917 0.9779 33 1 2.1302 -7.8996 1.0483 34 1 0.7435 -7.1539 -1.4436 35 1 -0.3593 -8.9777 -0.2749 36 1 1.2255 -9.7849 -0.2048 37 1 2.2627 -10.6646 -2.2066 38 1 1.9359 -11.5756 -4.4621 39 1 -2.2382 -10.6144 -7.0653 40 1 -2.9843 -9.2220 -4.9915 41 1 -1.5260 -8.7338 -2.3707 42 1 0.3579 -4.7882 0.2379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117110396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:26 Heat of formation + Delta-G solvation = 9.511308 kcal Electronic energy + Delta-G solvation = -24768.502364 eV Core-core repulsion = 21065.703380 eV Total energy + Delta-G solvation = -3702.798984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.34803 -40.79059 -39.50109 -38.49740 -36.46904 -34.29456 -33.73067 -32.93206 -31.22662 -30.53625 -30.21002 -27.56193 -26.94098 -24.96969 -23.79366 -23.16724 -22.34673 -22.24822 -22.16509 -19.51357 -18.84535 -18.44147 -17.96889 -17.05936 -16.78216 -16.73459 -16.41175 -16.06602 -15.91648 -15.86223 -15.39862 -15.16774 -15.11289 -14.55144 -14.26165 -14.14938 -14.01872 -13.58121 -13.57363 -13.41757 -13.10100 -12.93789 -12.76316 -12.55276 -12.33938 -12.19963 -12.18257 -12.04355 -11.85122 -11.17540 -11.15264 -10.81029 -9.80084 -9.49970 -9.30674 -9.15521 -8.96199 -8.47133 -6.15236 -0.00636 0.29628 0.56331 0.78041 1.34578 1.43011 1.45910 1.52903 1.90061 2.17509 2.63506 2.83929 3.14823 3.41175 3.50873 3.67042 3.75334 3.83215 4.00852 4.11707 4.13947 4.30941 4.34831 4.35511 4.46131 4.54289 4.61973 4.65343 4.69771 4.73392 4.77471 4.80111 4.97540 5.07830 5.14566 5.24462 5.25947 5.33621 5.48407 5.60078 5.67572 5.69570 5.75385 5.81722 6.01643 6.03983 6.20231 6.26781 6.32633 6.98098 7.79789 8.76571 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015037 B = 0.002270 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.679770 B =12333.970547 C =13442.774111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.111 3.889 11 C -0.245 4.245 12 C -0.075 4.075 13 C -0.169 4.169 14 C -0.038 4.038 15 C 0.111 3.889 16 N -0.684 5.684 17 C 0.104 3.896 18 C -0.098 4.098 19 C -0.072 4.072 20 C -0.115 4.115 21 C 0.023 3.977 22 O -0.211 6.211 23 C 0.011 3.989 24 C -0.232 4.232 25 C -0.157 4.157 26 C -0.080 4.080 27 C -0.196 4.196 28 H 0.272 0.728 29 H 0.116 0.884 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.039 0.961 33 H 0.105 0.895 34 H 0.337 0.663 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.249 0.751 40 H 0.173 0.827 41 H 0.128 0.872 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 -23.426 -6.373 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.061 3.939 11 C -0.264 4.264 12 C -0.092 4.092 13 C -0.188 4.188 14 C -0.038 4.038 15 C -0.017 4.017 16 N -0.314 5.314 17 C -0.024 4.024 18 C -0.099 4.099 19 C -0.091 4.091 20 C -0.133 4.133 21 C -0.024 4.024 22 O -0.112 6.112 23 C -0.053 4.053 24 C -0.250 4.250 25 C -0.158 4.158 26 C -0.099 4.099 27 C -0.216 4.216 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.154 0.846 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.176 0.824 38 H 0.169 0.831 39 H 0.265 0.735 40 H 0.191 0.809 41 H 0.146 0.854 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.684 -23.714 -6.589 24.670 hybrid contribution -1.207 1.676 0.122 2.069 sum 0.478 -22.038 -6.468 22.973 Atomic orbital electron populations 1.70193 1.08009 1.28650 1.49224 1.26583 0.96864 1.02713 0.95979 0.84531 0.78239 0.74879 0.78564 1.17498 1.19356 1.19305 1.21846 0.92470 0.81489 1.52979 0.88220 1.83936 1.35918 1.12565 1.81758 1.19887 0.91629 0.87922 0.94463 1.21305 0.93147 1.00214 1.11768 1.21172 1.00233 0.91496 0.96344 1.20977 0.93528 0.97807 1.06452 1.19590 0.93977 0.93211 0.97040 1.20834 0.98840 0.91440 0.90632 1.60587 1.53238 1.04783 1.12802 1.20902 0.98135 0.90960 0.92376 1.19543 0.94108 0.99083 0.97155 1.21104 0.99145 0.95335 0.93486 1.20256 0.94761 1.03673 0.94608 1.20044 0.97388 0.99940 0.85018 1.83992 1.32516 1.63203 1.31535 1.24781 0.83635 0.95396 1.01447 1.22881 1.01314 1.06901 0.93952 1.20313 0.96333 1.02251 0.96884 1.20367 0.98080 0.98927 0.92529 1.20257 0.99259 0.90415 1.11704 0.91903 0.86624 0.83813 0.83500 0.94237 0.87678 0.84551 0.93752 0.87983 0.82392 0.83145 0.73505 0.80917 0.85383 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.26 13.67 21.62 0.30 -56.96 16 2 C -0.02 -1.40 5.49 84.84 0.47 -0.93 16 3 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.41 -24.36 9.49 67.92 0.64 -23.71 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -14.36 9.76 -22.74 -0.22 -14.59 16 10 C 0.11 5.61 6.65 22.57 0.15 5.76 16 11 C -0.24 -10.85 9.17 22.39 0.21 -10.65 16 12 C -0.07 -2.57 10.04 22.25 0.22 -2.35 16 13 C -0.17 -5.23 9.70 22.30 0.22 -5.01 16 14 C -0.04 -1.24 5.39 -19.88 -0.11 -1.35 16 15 C 0.11 2.69 5.81 85.56 0.50 3.19 16 16 N -0.68 -15.95 6.48 -521.97 -3.38 -19.33 16 17 C 0.10 1.89 5.80 85.55 0.50 2.38 16 18 C -0.10 -1.98 5.36 -20.10 -0.11 -2.09 16 19 C -0.07 -1.32 9.66 22.30 0.22 -1.11 16 20 C -0.11 -2.23 10.07 22.35 0.23 -2.01 16 21 C 0.02 0.54 7.42 22.99 0.17 0.71 16 22 O -0.21 -4.49 10.58 -9.01 -0.10 -4.59 16 23 C 0.01 0.17 11.96 66.85 0.80 0.97 16 24 C -0.23 -4.31 11.14 23.54 0.26 -4.05 16 25 C -0.16 -3.68 6.40 -20.21 -0.13 -3.80 16 26 C -0.08 -1.79 9.68 22.20 0.21 -1.57 16 27 C -0.20 -8.40 9.65 22.39 0.22 -8.18 16 28 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 29 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 30 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.04 0.95 8.08 -2.39 -0.02 0.93 16 33 H 0.11 2.04 8.08 -2.38 -0.02 2.02 16 34 H 0.34 9.05 8.72 -89.69 -0.78 8.27 16 35 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 36 H 0.10 1.46 8.08 -2.39 -0.02 1.44 16 37 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.25 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 42 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -76.07 364.88 3.55 -72.52 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.27 Total: 31.31 kcal Atomic # 6 Polarization: -58.47 SS G_CDS: 4.66 Total: -53.81 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -3.09 Total: -76.30 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.32 Total: -19.17 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -76.07 3.55 -72.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117110396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.029 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds