Wall clock time and date at job start Tue Mar 31 2020 14:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34437 * 125.45703 * 2 1 4 4 C 1.46744 * 106.37533 * 180.10553 * 3 2 1 5 5 C 1.47105 * 127.02717 * 179.88588 * 4 3 2 6 6 O 1.21541 * 120.00293 * 179.68151 * 5 4 3 7 7 O 1.34790 * 119.99678 * 359.68805 * 5 4 3 8 8 C 1.45196 * 116.99756 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46950 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47296 * 179.97438 * 9 8 7 11 11 S 1.80995 * 109.47327 * 179.97438 * 10 9 8 12 12 C 1.76201 * 100.00126 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00134 * 0.02562 * 12 11 10 14 14 C 1.38803 * 120.00449 * 179.97438 * 12 11 10 15 15 N 1.31632 * 119.99442 * 0.02562 * 14 12 11 16 16 Si 1.86790 * 120.00242 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47339 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47280 * 120.00434 * 16 14 12 19 19 H 1.48497 * 109.47337 * 240.00132 * 16 14 12 20 20 C 1.37849 * 105.94980 * 359.62353 * 4 3 2 21 21 C 1.50701 * 125.89497 * 180.22634 * 20 4 3 22 22 N 1.34624 * 108.20723 * 0.22951 * 20 4 3 23 23 C 1.46505 * 124.81056 * 179.97438 * 22 20 4 24 24 C 1.52995 * 117.49882 * 132.22645 * 23 22 20 25 25 C 1.52994 * 117.49860 * 63.56703 * 23 22 20 26 26 H 1.08999 * 109.47200 * 265.20176 * 1 2 3 27 27 H 1.08999 * 109.47256 * 25.20319 * 1 2 3 28 28 H 1.09000 * 109.47144 * 145.20398 * 1 2 3 29 29 H 1.07995 * 126.81218 * 359.95274 * 3 2 1 30 30 H 1.09007 * 109.47465 * 59.99600 * 8 7 5 31 31 H 1.08998 * 109.47235 * 299.99253 * 8 7 5 32 32 H 1.09000 * 109.47306 * 299.99863 * 9 8 7 33 33 H 1.08994 * 109.47402 * 59.99957 * 9 8 7 34 34 H 1.09005 * 109.47311 * 300.00345 * 10 9 8 35 35 H 1.09007 * 109.47230 * 59.99839 * 10 9 8 36 36 H 0.97001 * 119.99574 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46810 * 89.98026 * 21 20 4 38 38 H 1.08998 * 109.47014 * 209.97354 * 21 20 4 39 39 H 1.08997 * 109.47494 * 329.97835 * 21 20 4 40 40 H 1.08998 * 115.54860 * 277.89749 * 23 22 20 41 41 H 1.08997 * 117.50077 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.49490 * 145.02190 * 24 23 22 43 43 H 1.09002 * 117.49934 * 214.98210 * 25 23 22 44 44 H 1.09000 * 117.49836 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2868 1.0951 0.0000 4 6 3.6736 0.6153 -0.0026 5 6 4.8947 1.4356 -0.0059 6 8 5.9862 0.9008 -0.0019 7 8 4.8032 2.7804 -0.0131 8 6 6.0492 3.5258 -0.0154 9 6 5.7462 5.0255 -0.0244 10 6 7.0590 5.8111 -0.0262 11 16 6.7006 7.5852 -0.0376 12 6 8.3408 8.2288 -0.0370 13 1 9.1852 7.5554 -0.0312 14 6 8.5480 9.6013 -0.0451 15 7 7.5189 10.4220 -0.0527 16 14 10.2868 10.2835 -0.0438 17 1 11.2590 9.1610 -0.0341 18 1 10.4959 11.1083 -1.2608 19 1 10.4880 11.1237 1.1640 20 6 3.5983 -0.7611 0.0048 21 6 4.7691 -1.7100 0.0102 22 7 2.2984 -1.1112 0.0062 23 6 1.8037 -2.4902 0.0129 24 6 0.7065 -2.8423 1.0193 25 6 2.1336 -3.3531 1.2324 26 1 -0.3633 -0.0860 1.0240 27 1 -0.3634 0.9298 -0.4376 28 1 -0.3633 -0.8439 -0.5864 29 1 1.9579 2.1237 -0.0007 30 1 6.6261 3.2667 -0.9033 31 1 6.6235 3.2763 0.8767 32 1 5.1720 5.2749 -0.9167 33 1 5.1692 5.2850 0.8631 34 1 7.6330 5.5617 0.8663 35 1 7.6365 5.5518 -0.9136 36 1 7.6636 11.3812 -0.0580 37 1 5.0512 -1.9330 1.0392 38 1 4.4909 -2.6331 -0.4984 39 1 5.6118 -1.2504 -0.5062 40 1 1.7724 -2.9831 -0.9588 41 1 0.3523 -2.0478 1.6761 42 1 -0.0465 -3.5671 0.7098 43 1 2.3189 -4.4139 1.0632 44 1 2.7190 -2.8950 2.0296 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117288416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:51 Heat of formation + Delta-G solvation = -33.259083 kcal Electronic energy + Delta-G solvation = -23665.106225 eV Core-core repulsion = 20095.896530 eV Total energy + Delta-G solvation = -3569.209696 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.86952 -39.83175 -37.35705 -36.34183 -33.35624 -32.99505 -32.40247 -31.13523 -29.46907 -26.80693 -25.57553 -24.98334 -23.75623 -23.21701 -21.97462 -21.18849 -20.22226 -18.85847 -17.57917 -17.35126 -16.82807 -16.36721 -16.24155 -15.73077 -14.83027 -14.78360 -14.41526 -14.27715 -14.26819 -13.69884 -13.55754 -13.54507 -13.11517 -12.80596 -12.61447 -12.57494 -12.48537 -12.34955 -12.18601 -12.01088 -11.67934 -11.28608 -11.21164 -11.19835 -11.08493 -10.85203 -10.82131 -10.62746 -10.27716 -10.11485 -9.56725 -9.04514 -8.91570 -8.29332 -8.25582 -6.51147 -6.20931 -3.91181 1.37974 2.09205 2.20448 2.80878 2.98589 3.23421 3.27149 3.29638 3.33148 3.64390 3.91523 4.03126 4.12963 4.24072 4.44562 4.52628 4.80884 4.88431 5.00814 5.01136 5.10299 5.15211 5.18141 5.23065 5.26560 5.30545 5.33463 5.34997 5.39960 5.47652 5.54874 5.62674 5.70102 5.73090 5.88840 5.90206 6.10917 6.28916 6.52726 6.55476 6.64584 6.79340 6.84399 6.94015 7.63479 8.05387 8.39309 9.25580 10.87331 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.001832 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.285336 B =15280.495181 C =15962.514267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.005 3.995 3 C -0.138 4.138 4 C -0.224 4.224 5 C 0.541 3.459 6 O -0.526 6.526 7 O -0.350 6.350 8 C 0.075 3.925 9 C -0.097 4.097 10 C -0.113 4.113 11 S -0.125 6.125 12 C -0.517 4.517 13 H 0.074 0.926 14 C 0.070 3.930 15 N -0.869 5.869 16 Si 0.920 3.080 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.119 3.881 21 C -0.093 4.093 22 N -0.411 5.411 23 C 0.042 3.958 24 C -0.165 4.165 25 C -0.169 4.169 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.154 0.846 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.267 0.733 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 -30.152 0.968 34.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.161 4.161 4 C -0.232 4.232 5 C 0.387 3.613 6 O -0.417 6.417 7 O -0.266 6.266 8 C 0.000 4.000 9 C -0.136 4.136 10 C -0.262 4.262 11 S 0.103 5.897 12 C -0.665 4.665 13 H 0.092 0.908 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.003 3.997 21 C -0.150 4.150 22 N -0.087 5.087 23 C -0.060 4.060 24 C -0.203 4.203 25 C -0.207 4.207 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.171 0.829 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.151 0.849 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.872 -29.816 0.959 34.272 hybrid contribution 2.421 -0.077 -0.028 2.422 sum -14.451 -29.893 0.931 33.216 Atomic orbital electron populations 1.20349 0.87682 1.03479 1.02342 1.20220 0.93762 0.84943 1.11190 1.21916 0.90276 0.98050 1.05872 1.19372 0.91737 0.90839 1.21259 1.20023 0.87943 0.81049 0.72252 1.90782 1.29352 1.73609 1.47994 1.86543 1.37361 1.18766 1.83961 1.23196 0.83224 0.91232 1.02384 1.21265 0.98152 0.89916 1.04226 1.23179 0.98259 1.01475 1.03301 1.84645 1.14196 0.94004 1.96855 1.22752 0.91190 0.94174 1.58380 0.90795 1.25022 0.98278 0.95938 0.94602 1.70036 1.29851 1.03297 1.47334 0.86094 0.82591 0.78862 0.77858 1.19586 1.20576 1.20575 1.20478 0.84720 0.93370 1.01166 1.20573 0.94384 0.96596 1.03474 1.42934 1.04723 1.04779 1.56295 1.21992 1.05281 0.82031 0.96739 1.23396 0.92424 1.03673 1.00775 1.23412 0.98722 1.00136 0.98423 0.91276 0.89945 0.91648 0.82853 0.91344 0.91350 0.90416 0.90430 0.91762 0.91763 0.92352 0.90365 0.91565 0.88200 0.84933 0.87492 0.86931 0.86948 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 8.83 36.00 0.32 -0.16 16 2 C 0.00 0.05 6.72 -81.89 -0.55 -0.50 16 3 C -0.14 -1.61 10.89 -37.49 -0.41 -2.02 16 4 C -0.22 -3.03 6.33 -103.01 -0.65 -3.68 16 5 C 0.54 8.58 7.95 34.33 0.27 8.85 16 6 O -0.53 -9.07 14.67 -19.30 -0.28 -9.36 16 7 O -0.35 -5.69 10.12 -40.74 -0.41 -6.10 16 8 C 0.07 1.21 5.48 37.16 0.20 1.41 16 9 C -0.10 -1.70 5.60 -26.73 -0.15 -1.85 16 10 C -0.11 -2.37 5.67 37.16 0.21 -2.16 16 11 S -0.13 -3.34 21.44 -107.50 -2.30 -5.64 16 12 C -0.52 -15.05 9.50 30.94 0.29 -14.75 16 13 H 0.07 2.09 7.80 -52.49 -0.41 1.68 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 16 Si 0.92 21.84 29.55 -169.99 -5.02 16.81 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.12 1.32 6.88 -81.51 -0.56 0.76 16 21 C -0.09 -0.84 9.33 36.01 0.34 -0.51 16 22 N -0.41 -3.63 2.98 -100.68 -0.30 -3.93 16 23 C 0.04 0.22 5.52 -67.93 -0.38 -0.15 16 24 C -0.17 -0.58 9.17 -26.70 -0.24 -0.82 16 25 C -0.17 -0.67 10.18 -26.70 -0.27 -0.94 16 26 H 0.07 0.34 7.58 -51.93 -0.39 -0.06 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.32 8.14 -51.91 -0.42 0.89 16 35 H 0.06 1.32 8.14 -51.91 -0.42 0.89 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.44 7.76 -51.93 -0.40 0.04 16 39 H 0.10 1.10 6.52 -51.93 -0.34 0.76 16 40 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.11 0.46 7.07 -51.93 -0.37 0.09 16 42 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -34.42 385.27 -10.40 -44.82 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.94 Total: -2.31 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.67 Total: -14.59 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: 0.43 Total: -29.44 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.70 Total: -15.46 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.30 Total: -5.64 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.42 -10.40 -44.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117288416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.560 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds