Wall clock time and date at job start Tue Mar 31 2020 14:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34437 * 125.45703 * 2 1 4 4 C 1.46744 * 106.37533 * 180.10553 * 3 2 1 5 5 C 1.47105 * 127.02717 * 179.88588 * 4 3 2 6 6 O 1.21541 * 120.00293 * 179.68151 * 5 4 3 7 7 O 1.34790 * 119.99678 * 359.68805 * 5 4 3 8 8 C 1.45196 * 116.99756 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46950 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47296 * 179.97438 * 9 8 7 11 11 S 1.80995 * 109.47327 * 179.97438 * 10 9 8 12 12 C 1.76201 * 100.00126 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00134 * 0.02562 * 12 11 10 14 14 C 1.38803 * 120.00449 * 179.97438 * 12 11 10 15 15 N 1.31632 * 119.99442 * 0.02562 * 14 12 11 16 16 Si 1.86790 * 120.00242 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47339 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47280 * 120.00434 * 16 14 12 19 19 H 1.48497 * 109.47337 * 240.00132 * 16 14 12 20 20 C 1.37849 * 105.94980 * 359.62353 * 4 3 2 21 21 C 1.50701 * 125.89497 * 180.22634 * 20 4 3 22 22 N 1.34624 * 108.20723 * 0.22951 * 20 4 3 23 23 C 1.46505 * 124.81056 * 179.97438 * 22 20 4 24 24 C 1.52995 * 117.49882 * 132.22645 * 23 22 20 25 25 C 1.52994 * 117.49860 * 63.56703 * 23 22 20 26 26 H 1.08999 * 109.47200 * 265.20176 * 1 2 3 27 27 H 1.08999 * 109.47256 * 25.20319 * 1 2 3 28 28 H 1.09000 * 109.47144 * 145.20398 * 1 2 3 29 29 H 1.07995 * 126.81218 * 359.95274 * 3 2 1 30 30 H 1.09007 * 109.47465 * 59.99600 * 8 7 5 31 31 H 1.08998 * 109.47235 * 299.99253 * 8 7 5 32 32 H 1.09000 * 109.47306 * 299.99863 * 9 8 7 33 33 H 1.08994 * 109.47402 * 59.99957 * 9 8 7 34 34 H 1.09005 * 109.47311 * 300.00345 * 10 9 8 35 35 H 1.09007 * 109.47230 * 59.99839 * 10 9 8 36 36 H 0.97001 * 119.99574 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46810 * 89.98026 * 21 20 4 38 38 H 1.08998 * 109.47014 * 209.97354 * 21 20 4 39 39 H 1.08997 * 109.47494 * 329.97835 * 21 20 4 40 40 H 1.08998 * 115.54860 * 277.89749 * 23 22 20 41 41 H 1.08997 * 117.50077 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.49490 * 145.02190 * 24 23 22 43 43 H 1.09002 * 117.49934 * 214.98210 * 25 23 22 44 44 H 1.09000 * 117.49836 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2868 1.0951 0.0000 4 6 3.6736 0.6153 -0.0026 5 6 4.8947 1.4356 -0.0059 6 8 5.9862 0.9008 -0.0019 7 8 4.8032 2.7804 -0.0131 8 6 6.0492 3.5258 -0.0154 9 6 5.7462 5.0255 -0.0244 10 6 7.0590 5.8111 -0.0262 11 16 6.7006 7.5852 -0.0376 12 6 8.3408 8.2288 -0.0370 13 1 9.1852 7.5554 -0.0312 14 6 8.5480 9.6013 -0.0451 15 7 7.5189 10.4220 -0.0527 16 14 10.2868 10.2835 -0.0438 17 1 11.2590 9.1610 -0.0341 18 1 10.4959 11.1083 -1.2608 19 1 10.4880 11.1237 1.1640 20 6 3.5983 -0.7611 0.0048 21 6 4.7691 -1.7100 0.0102 22 7 2.2984 -1.1112 0.0062 23 6 1.8037 -2.4902 0.0129 24 6 0.7065 -2.8423 1.0193 25 6 2.1336 -3.3531 1.2324 26 1 -0.3633 -0.0860 1.0240 27 1 -0.3634 0.9298 -0.4376 28 1 -0.3633 -0.8439 -0.5864 29 1 1.9579 2.1237 -0.0007 30 1 6.6261 3.2667 -0.9033 31 1 6.6235 3.2763 0.8767 32 1 5.1720 5.2749 -0.9167 33 1 5.1692 5.2850 0.8631 34 1 7.6330 5.5617 0.8663 35 1 7.6365 5.5518 -0.9136 36 1 7.6636 11.3812 -0.0580 37 1 5.0512 -1.9330 1.0392 38 1 4.4909 -2.6331 -0.4984 39 1 5.6118 -1.2504 -0.5062 40 1 1.7724 -2.9831 -0.9588 41 1 0.3523 -2.0478 1.6761 42 1 -0.0465 -3.5671 0.7098 43 1 2.3189 -4.4139 1.0632 44 1 2.7190 -2.8950 2.0296 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117288416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:51 Heat of formation + Delta-G solvation = -50.791206 kcal Electronic energy + Delta-G solvation = -23665.866475 eV Core-core repulsion = 20095.896530 eV Total energy + Delta-G solvation = -3569.969946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61922 -41.03885 -37.90155 -37.50099 -34.88130 -34.58289 -33.70360 -31.91453 -30.10393 -28.30488 -27.56806 -26.01557 -24.48242 -23.51240 -22.85382 -22.57891 -21.16037 -19.66210 -19.46895 -18.51398 -17.69569 -17.48476 -17.25427 -16.90526 -16.50559 -16.08055 -15.90992 -15.19874 -14.98295 -14.94982 -14.37998 -14.27115 -14.19470 -13.97012 -13.79412 -13.75555 -13.51338 -13.14613 -13.10311 -12.96179 -12.90252 -12.60982 -12.50880 -12.41724 -12.36419 -12.31017 -11.64969 -11.64773 -11.54013 -11.48857 -11.34602 -11.16277 -10.36680 -9.72862 -9.05325 -8.68793 -8.38536 -6.15267 0.38688 1.26633 1.29733 1.38608 1.40031 1.51047 1.69018 2.06149 2.21732 2.26959 2.51696 2.95882 3.28889 3.49768 3.69681 3.73929 3.77004 3.84271 3.91663 4.00520 4.05514 4.11133 4.19863 4.32493 4.48482 4.55627 4.60796 4.62383 4.67136 4.67457 4.75346 4.79613 4.87905 4.93660 5.00698 5.01643 5.07752 5.09508 5.15601 5.22196 5.39820 5.50342 5.70829 6.02563 6.17769 6.27084 6.84185 7.03805 8.71232 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.001832 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.285336 B =15280.495181 C =15962.514267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 C -0.168 4.168 4 C -0.266 4.266 5 C 0.536 3.464 6 O -0.549 6.549 7 O -0.357 6.357 8 C 0.082 3.918 9 C -0.084 4.084 10 C -0.091 4.091 11 S -0.185 6.185 12 C -0.541 4.541 13 H 0.074 0.926 14 C 0.015 3.985 15 N -0.907 5.907 16 Si 0.996 3.004 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.122 3.878 21 C -0.089 4.089 22 N -0.404 5.404 23 C 0.020 3.980 24 C -0.152 4.152 25 C -0.166 4.166 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.150 0.850 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.272 0.728 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.151 0.849 41 H 0.099 0.901 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.723 -32.630 1.007 36.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.191 4.191 4 C -0.274 4.274 5 C 0.385 3.615 6 O -0.442 6.442 7 O -0.273 6.273 8 C 0.007 3.993 9 C -0.123 4.123 10 C -0.239 4.239 11 S 0.044 5.956 12 C -0.688 4.688 13 H 0.092 0.908 14 C -0.190 4.190 15 N -0.543 5.543 16 Si 0.818 3.182 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.196 1.196 20 C 0.003 3.997 21 C -0.146 4.146 22 N -0.079 5.079 23 C -0.082 4.082 24 C -0.189 4.189 25 C -0.203 4.203 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.168 0.832 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.168 0.832 41 H 0.118 0.882 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.627 -32.313 1.000 36.822 hybrid contribution 2.525 0.548 -0.024 2.584 sum -15.102 -31.765 0.976 35.186 Atomic orbital electron populations 1.20472 0.84951 1.04569 1.03646 1.20710 0.95298 0.84424 1.08604 1.22022 0.90064 0.98944 1.08085 1.19510 0.91542 0.91987 1.24390 1.20497 0.88686 0.80688 0.71669 1.90753 1.30255 1.73691 1.49481 1.86532 1.37099 1.19452 1.84230 1.22988 0.83434 0.90157 1.02724 1.21081 0.96333 0.90550 1.04290 1.23059 0.99988 0.97219 1.03677 1.84631 1.14655 0.99256 1.97051 1.23097 0.91783 0.94987 1.58975 0.90788 1.26084 1.03096 0.96114 0.93690 1.70159 1.32402 1.03829 1.47904 0.84935 0.76690 0.78203 0.78343 1.18746 1.19588 1.19580 1.20730 0.86262 0.92816 0.99878 1.20564 0.92960 0.97099 1.03960 1.43214 1.03857 1.06356 1.54464 1.22418 1.07135 0.80257 0.98340 1.23515 0.92576 1.03577 0.99197 1.23487 0.98954 1.00948 0.96914 0.89847 0.89496 0.89814 0.83180 0.91031 0.91031 0.90388 0.90396 0.91307 0.91316 0.91880 0.89654 0.88728 0.90409 0.83166 0.88227 0.84360 0.84694 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 8.83 71.23 0.63 -0.11 16 2 C 0.02 0.30 6.72 40.97 0.28 0.57 16 3 C -0.17 -4.02 10.89 23.62 0.26 -3.76 16 4 C -0.27 -7.43 6.33 -18.82 -0.12 -7.55 16 5 C 0.54 17.68 7.95 70.15 0.56 18.23 16 6 O -0.55 -19.59 14.67 19.70 0.29 -19.30 16 7 O -0.36 -11.96 10.12 -57.02 -0.58 -12.54 16 8 C 0.08 2.69 5.48 71.98 0.39 3.08 16 9 C -0.08 -2.98 5.60 30.59 0.17 -2.80 16 10 C -0.09 -3.81 5.67 71.98 0.41 -3.40 16 11 S -0.18 -10.07 21.44 -56.49 -1.21 -11.28 16 12 C -0.54 -31.87 9.50 67.96 0.65 -31.22 16 13 H 0.07 4.21 7.80 -2.91 -0.02 4.19 16 14 C 0.02 0.88 5.49 84.86 0.47 1.34 16 15 N -0.91 -55.37 13.22 21.65 0.29 -55.09 16 16 Si 1.00 44.71 29.55 68.60 2.03 46.73 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 C 0.12 2.66 6.88 42.04 0.29 2.95 16 21 C -0.09 -1.55 9.33 71.24 0.66 -0.89 16 22 N -0.40 -6.53 2.98 -472.43 -1.41 -7.94 16 23 C 0.02 0.15 5.52 44.99 0.25 0.40 16 24 C -0.15 -0.54 9.17 30.62 0.28 -0.26 16 25 C -0.17 -0.81 10.18 30.61 0.31 -0.50 16 26 H 0.08 0.59 7.58 -2.39 -0.02 0.57 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.51 7.65 -2.39 -0.02 0.49 16 29 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.06 7.76 -2.39 -0.02 1.04 16 39 H 0.08 1.75 6.52 -2.39 -0.02 1.73 16 40 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 0.55 7.07 -2.39 -0.02 0.53 16 42 H 0.14 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -76.25 385.27 5.87 -70.37 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.98 Total: 12.94 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 5.48 Total: -23.91 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -1.12 Total: -63.02 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.29 Total: -31.84 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -10.07 SS G_CDS: -1.21 Total: -11.28 kcal Total: -76.25 5.87 -70.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117288416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.583 kcal (2) G-P(sol) polarization free energy of solvation -76.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds