Wall clock time and date at job start Tue Mar 31 2020 14:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30144 * 126.81506 * 2 1 4 4 O 1.20883 * 111.78351 * 180.28974 * 3 2 1 5 5 C 1.34244 * 111.65930 * 359.69545 * 4 3 2 6 6 C 1.50699 * 126.83334 * 179.97438 * 5 4 3 7 7 C 1.36008 * 106.33569 * 0.02562 * 5 4 3 8 8 N 1.40403 * 128.07428 * 179.97438 * 7 5 4 9 9 C 1.34779 * 119.99984 * 137.11947 * 8 7 5 10 10 O 1.21398 * 120.00025 * 4.74525 * 9 8 7 11 11 C 1.49320 * 119.99961 * 184.74197 * 9 8 7 12 12 O 1.21365 * 119.99989 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99961 * 179.97438 * 11 9 8 14 14 C 1.47417 * 125.64858 * 359.96413 * 13 11 9 15 15 C 1.54910 * 104.83265 * 204.16263 * 14 13 11 16 16 C 1.55154 * 101.57917 * 322.98807 * 15 14 13 17 17 O 1.42897 * 110.72376 * 277.13590 * 16 15 14 18 18 C 1.50704 * 110.87186 * 153.93759 * 16 15 14 19 19 H 1.08003 * 119.99850 * 269.10781 * 18 16 15 20 20 C 1.37876 * 120.00034 * 89.10621 * 18 16 15 21 21 N 1.31521 * 119.99619 * 175.55782 * 20 18 16 22 22 Si 1.86792 * 120.00080 * 355.56142 * 20 18 16 23 23 H 1.48498 * 109.47329 * 89.34164 * 22 20 18 24 24 H 1.48509 * 109.47171 * 209.33983 * 22 20 18 25 25 H 1.48503 * 109.47129 * 329.33891 * 22 20 18 26 26 C 1.47020 * 125.64510 * 180.02562 * 13 11 9 27 27 H 1.08995 * 109.47421 * 277.70067 * 1 2 3 28 28 H 1.08996 * 109.47177 * 37.70258 * 1 2 3 29 29 H 1.08996 * 109.46862 * 157.70141 * 1 2 3 30 30 H 1.08997 * 109.47155 * 270.03122 * 6 5 4 31 31 H 1.08999 * 109.46878 * 30.03107 * 6 5 4 32 32 H 1.09001 * 109.46662 * 150.02938 * 6 5 4 33 33 H 0.96999 * 119.99779 * 317.12435 * 8 7 5 34 34 H 1.09004 * 110.36861 * 323.00012 * 14 13 11 35 35 H 1.09002 * 110.36807 * 85.32184 * 14 13 11 36 36 H 1.08995 * 111.00519 * 204.91718 * 15 14 13 37 37 H 1.08996 * 111.00575 * 81.06079 * 15 14 13 38 38 H 0.96702 * 114.00153 * 169.88791 * 17 16 15 39 39 H 0.97008 * 119.99319 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.88738 * 59.48741 * 26 13 11 41 41 H 1.09000 * 109.88449 * 298.31837 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0419 0.0000 4 8 3.4544 0.7284 -0.0057 5 6 3.6093 -0.6051 -0.0037 6 6 4.9117 -1.3632 -0.0097 7 6 2.3571 -1.1357 0.0036 8 7 1.9911 -2.4912 0.0077 9 6 0.9938 -2.9175 0.8078 10 8 0.3549 -2.1175 1.4603 11 6 0.6746 -4.3738 0.8917 12 8 1.3136 -5.1736 0.2398 13 7 -0.3223 -4.8002 1.6922 14 6 -1.1733 -3.9418 2.5362 15 6 -1.6828 -4.8742 3.6635 16 6 -1.8934 -6.2055 2.8951 17 8 -3.1597 -6.2124 2.2331 18 6 -1.7731 -7.3863 3.8238 19 1 -0.8149 -7.8626 3.9705 20 6 -2.8863 -7.8585 4.4863 21 7 -2.8001 -8.9411 5.2281 22 14 -4.5169 -6.9607 4.3301 23 1 -5.2691 -7.4990 3.1684 24 1 -5.3115 -7.1584 5.5690 25 1 -4.2664 -5.5108 4.1288 26 6 -0.7404 -6.1985 1.8693 27 1 -0.3634 0.1377 1.0183 28 1 -0.3633 0.8131 -0.6285 29 1 -0.3633 -0.9508 -0.3899 30 1 5.2199 -1.5477 -1.0388 31 1 5.6763 -0.7760 0.4988 32 1 4.7808 -2.3143 0.5065 33 1 2.4560 -3.1208 -0.5652 34 1 -0.5885 -3.1234 2.9561 35 1 -2.0114 -3.5526 1.9580 36 1 -2.6227 -4.5092 4.0774 37 1 -0.9317 -4.9887 4.4450 38 1 -3.2773 -6.9483 1.6168 39 1 -3.5832 -9.2731 5.6944 40 1 0.0942 -6.7902 2.2453 41 1 -1.0873 -6.6049 0.9193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118206444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:29 Heat of formation + Delta-G solvation = -39.330377 kcal Electronic energy + Delta-G solvation = -27873.168684 eV Core-core repulsion = 23757.402503 eV Total energy + Delta-G solvation = -4115.766181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.21064 -40.87009 -39.06866 -37.73838 -36.22461 -34.87489 -34.21484 -32.67834 -32.44000 -30.51027 -28.82936 -28.61822 -28.02631 -26.35059 -24.58557 -22.82917 -21.77668 -21.09232 -20.03893 -19.69975 -18.21408 -17.98026 -17.70388 -17.55239 -16.64906 -16.11530 -15.96162 -15.34549 -14.86736 -14.84969 -14.77262 -14.15085 -13.71569 -13.62385 -13.51135 -13.33943 -13.22569 -12.98294 -12.76299 -12.68647 -12.61612 -12.15105 -12.02060 -11.72723 -11.58648 -11.38676 -11.05610 -10.86615 -10.60794 -10.40554 -10.25797 -9.89759 -9.51851 -9.25836 -8.94262 -8.70460 -8.63086 -8.44861 -6.25312 -4.39094 0.93828 1.38054 1.86802 2.10971 2.81399 3.16533 3.40623 3.44628 3.48462 3.65042 4.01551 4.08782 4.26635 4.43804 4.59129 4.88756 4.95746 5.00248 5.07537 5.08355 5.26023 5.31206 5.45062 5.47815 5.60042 5.61065 5.70076 5.86634 5.92159 5.96826 6.10691 6.29004 6.32101 6.57899 6.67740 6.73036 6.96863 7.33594 7.46155 7.57559 7.96593 7.98081 8.04993 8.53089 8.73826 9.34971 10.83362 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.003031 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.691983 B = 9235.337579 C = 9771.949681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.041 3.959 3 N -0.359 5.359 4 O 0.105 5.895 5 C -0.044 4.044 6 C -0.074 4.074 7 C 0.028 3.972 8 N -0.619 5.619 9 C 0.513 3.487 10 O -0.488 6.488 11 C 0.516 3.484 12 O -0.533 6.533 13 N -0.571 5.571 14 C 0.093 3.907 15 C -0.125 4.125 16 C 0.220 3.780 17 O -0.561 6.561 18 C -0.554 4.554 19 H 0.081 0.919 20 C 0.076 3.924 21 N -0.886 5.886 22 Si 0.946 3.054 23 H -0.292 1.292 24 H -0.324 1.324 25 H -0.264 1.264 26 C 0.089 3.911 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.425 0.575 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.371 0.629 39 H 0.268 0.732 40 H 0.082 0.918 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.814 14.645 -11.367 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 N -0.066 5.066 4 O 0.043 5.957 5 C -0.110 4.110 6 C -0.131 4.131 7 C -0.070 4.070 8 N -0.272 5.272 9 C 0.295 3.705 10 O -0.360 6.360 11 C 0.298 3.702 12 O -0.412 6.412 13 N -0.303 5.303 14 C -0.029 4.029 15 C -0.163 4.163 16 C 0.179 3.821 17 O -0.368 6.368 18 C -0.591 4.591 19 H 0.099 0.901 20 C -0.130 4.130 21 N -0.521 5.521 22 Si 0.781 3.219 23 H -0.219 1.219 24 H -0.255 1.255 25 H -0.189 1.189 26 C -0.032 4.032 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.264 0.736 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.219 0.781 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.355 16.497 -10.773 22.258 hybrid contribution -0.584 -1.343 -0.623 1.591 sum 9.771 15.154 -11.395 21.330 Atomic orbital electron populations 1.20163 0.85114 1.02831 1.03961 1.23500 0.99313 0.87423 1.01775 1.73816 0.89097 1.23258 1.20454 1.84868 1.21450 1.21204 1.68206 1.24101 0.97249 0.84368 1.05325 1.20359 0.89756 0.98725 1.04247 1.17976 0.91712 0.85881 1.11465 1.42265 1.36658 1.05440 1.42787 1.20508 0.80217 0.90042 0.79717 1.90774 1.48071 1.55794 1.41341 1.19216 0.81634 0.87649 0.81732 1.90759 1.50397 1.55509 1.44499 1.48464 1.30484 1.10876 1.40483 1.22816 0.93854 0.93916 0.92312 1.23205 1.01975 0.94565 0.96530 1.20130 0.78634 0.94875 0.88417 1.86197 1.37270 1.53345 1.60038 1.21145 0.97745 1.13590 1.26662 0.90083 1.25115 1.00334 0.94131 0.93386 1.69964 1.31065 1.21377 1.29712 0.85746 0.80825 0.80998 0.74366 1.21936 1.25546 1.18947 1.23162 1.00160 0.79579 1.00325 0.89143 0.91090 0.90649 0.89163 0.89276 0.89041 0.73569 0.89169 0.91008 0.89582 0.89593 0.78107 0.92310 0.89927 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 8.61 36.01 0.31 -0.41 16 2 C 0.04 0.51 6.97 -81.92 -0.57 -0.06 16 3 N -0.36 -4.62 12.06 33.57 0.40 -4.22 16 4 O 0.10 1.17 11.20 16.64 0.19 1.35 16 5 C -0.04 -0.41 7.52 -35.11 -0.26 -0.68 16 6 C -0.07 -0.38 10.45 36.01 0.38 -0.01 16 7 C 0.03 0.32 6.61 -83.35 -0.55 -0.24 16 8 N -0.62 -6.90 5.45 -10.09 -0.05 -6.95 16 9 C 0.51 7.07 7.32 -11.65 -0.09 6.99 16 10 O -0.49 -7.29 10.31 5.46 0.06 -7.23 16 11 C 0.52 8.24 7.91 -11.65 -0.09 8.15 16 12 O -0.53 -9.22 16.81 5.48 0.09 -9.13 16 13 N -0.57 -9.79 3.33 -171.08 -0.57 -10.36 16 14 C 0.09 1.54 6.05 -2.53 -0.02 1.52 16 15 C -0.12 -2.38 5.91 -24.58 -0.15 -2.52 16 16 C 0.22 4.58 0.68 -89.94 -0.06 4.52 16 17 O -0.56 -11.34 8.47 -35.23 -0.30 -11.64 16 18 C -0.55 -14.07 8.83 -34.44 -0.30 -14.37 16 19 H 0.08 2.25 7.80 -52.48 -0.41 1.84 16 20 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 21 N -0.89 -25.59 13.96 55.43 0.77 -24.82 16 22 Si 0.95 22.38 25.01 -169.99 -4.25 18.13 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.32 -7.95 7.11 56.52 0.40 -7.55 16 25 H -0.26 -6.04 5.09 56.52 0.29 -5.75 16 26 C 0.09 1.67 6.20 -3.06 -0.02 1.65 16 27 H 0.09 1.09 7.70 -51.93 -0.40 0.69 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.88 7.02 -51.93 -0.36 0.51 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.43 3.90 8.30 -40.82 -0.34 3.57 16 34 H 0.09 1.42 6.16 -51.93 -0.32 1.11 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.68 6.42 -51.93 -0.33 1.35 16 37 H 0.09 1.64 8.04 -51.93 -0.42 1.23 16 38 H 0.37 6.51 8.94 45.56 0.41 6.92 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.08 1.64 7.65 -51.93 -0.40 1.24 16 41 H 0.07 1.20 7.98 -51.93 -0.41 0.78 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -31.49 339.43 -4.41 -35.91 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.35 Total: 7.36 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.52 Total: 6.48 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.55 Total: -46.34 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.04 Total: -26.64 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.25 Total: 18.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.49 -4.41 -35.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118206444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.425 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds