Wall clock time and date at job start Tue Mar 31 2020 14:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30144 * 126.81506 * 2 1 4 4 O 1.20883 * 111.78351 * 180.28974 * 3 2 1 5 5 C 1.34244 * 111.65930 * 359.69545 * 4 3 2 6 6 C 1.50699 * 126.83334 * 179.97438 * 5 4 3 7 7 C 1.36008 * 106.33569 * 0.02562 * 5 4 3 8 8 N 1.40403 * 128.07428 * 179.97438 * 7 5 4 9 9 C 1.34779 * 119.99984 * 137.11947 * 8 7 5 10 10 O 1.21398 * 120.00025 * 4.74525 * 9 8 7 11 11 C 1.49320 * 119.99961 * 184.74197 * 9 8 7 12 12 O 1.21365 * 119.99989 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99961 * 179.97438 * 11 9 8 14 14 C 1.47417 * 125.64858 * 359.96413 * 13 11 9 15 15 C 1.54910 * 104.83265 * 204.16263 * 14 13 11 16 16 C 1.55154 * 101.57917 * 322.98807 * 15 14 13 17 17 O 1.42897 * 110.72376 * 277.13590 * 16 15 14 18 18 C 1.50704 * 110.87186 * 153.93759 * 16 15 14 19 19 H 1.08003 * 119.99850 * 269.10781 * 18 16 15 20 20 C 1.37876 * 120.00034 * 89.10621 * 18 16 15 21 21 N 1.31521 * 119.99619 * 175.55782 * 20 18 16 22 22 Si 1.86792 * 120.00080 * 355.56142 * 20 18 16 23 23 H 1.48498 * 109.47329 * 89.34164 * 22 20 18 24 24 H 1.48509 * 109.47171 * 209.33983 * 22 20 18 25 25 H 1.48503 * 109.47129 * 329.33891 * 22 20 18 26 26 C 1.47020 * 125.64510 * 180.02562 * 13 11 9 27 27 H 1.08995 * 109.47421 * 277.70067 * 1 2 3 28 28 H 1.08996 * 109.47177 * 37.70258 * 1 2 3 29 29 H 1.08996 * 109.46862 * 157.70141 * 1 2 3 30 30 H 1.08997 * 109.47155 * 270.03122 * 6 5 4 31 31 H 1.08999 * 109.46878 * 30.03107 * 6 5 4 32 32 H 1.09001 * 109.46662 * 150.02938 * 6 5 4 33 33 H 0.96999 * 119.99779 * 317.12435 * 8 7 5 34 34 H 1.09004 * 110.36861 * 323.00012 * 14 13 11 35 35 H 1.09002 * 110.36807 * 85.32184 * 14 13 11 36 36 H 1.08995 * 111.00519 * 204.91718 * 15 14 13 37 37 H 1.08996 * 111.00575 * 81.06079 * 15 14 13 38 38 H 0.96702 * 114.00153 * 169.88791 * 17 16 15 39 39 H 0.97008 * 119.99319 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.88738 * 59.48741 * 26 13 11 41 41 H 1.09000 * 109.88449 * 298.31837 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0419 0.0000 4 8 3.4544 0.7284 -0.0057 5 6 3.6093 -0.6051 -0.0037 6 6 4.9117 -1.3632 -0.0097 7 6 2.3571 -1.1357 0.0036 8 7 1.9911 -2.4912 0.0077 9 6 0.9938 -2.9175 0.8078 10 8 0.3549 -2.1175 1.4603 11 6 0.6746 -4.3738 0.8917 12 8 1.3136 -5.1736 0.2398 13 7 -0.3223 -4.8002 1.6922 14 6 -1.1733 -3.9418 2.5362 15 6 -1.6828 -4.8742 3.6635 16 6 -1.8934 -6.2055 2.8951 17 8 -3.1597 -6.2124 2.2331 18 6 -1.7731 -7.3863 3.8238 19 1 -0.8149 -7.8626 3.9705 20 6 -2.8863 -7.8585 4.4863 21 7 -2.8001 -8.9411 5.2281 22 14 -4.5169 -6.9607 4.3301 23 1 -5.2691 -7.4990 3.1684 24 1 -5.3115 -7.1584 5.5690 25 1 -4.2664 -5.5108 4.1288 26 6 -0.7404 -6.1985 1.8693 27 1 -0.3634 0.1377 1.0183 28 1 -0.3633 0.8131 -0.6285 29 1 -0.3633 -0.9508 -0.3899 30 1 5.2199 -1.5477 -1.0388 31 1 5.6763 -0.7760 0.4988 32 1 4.7808 -2.3143 0.5065 33 1 2.4560 -3.1208 -0.5652 34 1 -0.5885 -3.1234 2.9561 35 1 -2.0114 -3.5526 1.9580 36 1 -2.6227 -4.5092 4.0774 37 1 -0.9317 -4.9887 4.4450 38 1 -3.2773 -6.9483 1.6168 39 1 -3.5832 -9.2731 5.6944 40 1 0.0942 -6.7902 2.2453 41 1 -1.0873 -6.6049 0.9193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118206444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:29 Heat of formation + Delta-G solvation = -64.170604 kcal Electronic energy + Delta-G solvation = -27874.245837 eV Core-core repulsion = 23757.402503 eV Total energy + Delta-G solvation = -4116.843334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.08267 -42.06529 -40.38459 -39.15648 -37.26592 -36.30655 -35.06893 -34.45859 -33.47042 -32.04801 -30.13957 -29.70800 -28.75744 -27.85091 -25.97749 -24.15880 -22.92096 -22.00791 -21.54777 -20.88583 -19.61424 -19.13120 -18.91498 -18.66723 -17.83904 -17.38202 -17.07255 -16.93163 -16.63289 -16.08960 -15.92991 -15.26570 -15.01105 -14.75746 -14.56382 -14.37773 -14.21014 -14.09288 -13.99455 -13.94616 -13.56004 -13.44207 -13.36809 -13.27463 -12.85895 -12.61477 -12.49318 -12.34677 -12.24441 -11.89531 -11.75686 -11.19359 -10.77860 -10.75886 -10.63397 -10.39829 -9.89266 -9.74783 -8.33617 -6.48824 -0.02246 0.40236 0.84112 1.12945 1.52084 1.56341 1.76762 1.93936 1.99748 2.38644 2.46566 2.96949 3.03610 3.22479 3.36247 3.49722 3.77607 3.78452 3.99169 4.20923 4.27957 4.34426 4.37361 4.60497 4.63588 4.66528 4.68793 4.76732 4.80136 4.84601 5.01828 5.05664 5.10970 5.16397 5.19868 5.33268 5.50613 5.76242 6.05403 6.18830 6.45514 6.58597 6.73413 6.94953 7.15039 7.30300 8.79162 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.003031 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.691983 B = 9235.337579 C = 9771.949681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.026 3.974 3 N -0.382 5.382 4 O 0.103 5.897 5 C -0.018 4.018 6 C -0.076 4.076 7 C 0.000 4.000 8 N -0.600 5.600 9 C 0.520 3.480 10 O -0.500 6.500 11 C 0.519 3.481 12 O -0.546 6.546 13 N -0.577 5.577 14 C 0.108 3.892 15 C -0.125 4.125 16 C 0.220 3.780 17 O -0.560 6.560 18 C -0.548 4.548 19 H 0.044 0.956 20 C 0.026 3.974 21 N -0.937 5.937 22 Si 1.004 2.996 23 H -0.283 1.283 24 H -0.338 1.338 25 H -0.249 1.249 26 C 0.099 3.901 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.435 0.565 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.383 0.617 39 H 0.267 0.733 40 H 0.065 0.935 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.555 16.504 -12.986 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.134 4.134 3 N -0.090 5.090 4 O 0.042 5.958 5 C -0.085 4.085 6 C -0.133 4.133 7 C -0.098 4.098 8 N -0.253 5.253 9 C 0.301 3.699 10 O -0.373 6.373 11 C 0.302 3.698 12 O -0.425 6.425 13 N -0.310 5.310 14 C -0.014 4.014 15 C -0.163 4.163 16 C 0.179 3.821 17 O -0.369 6.369 18 C -0.586 4.586 19 H 0.062 0.938 20 C -0.174 4.174 21 N -0.575 5.575 22 Si 0.837 3.163 23 H -0.209 1.209 24 H -0.271 1.271 25 H -0.174 1.174 26 C -0.024 4.024 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.276 0.724 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.233 0.767 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.138 18.377 -12.442 24.830 hybrid contribution -0.627 -1.938 -0.171 2.044 sum 10.510 16.439 -12.613 23.233 Atomic orbital electron populations 1.20126 0.84806 1.03103 1.03671 1.23768 0.99900 0.87943 1.01822 1.73809 0.89681 1.23807 1.21709 1.84850 1.20870 1.22136 1.67957 1.24812 0.98170 0.83625 1.01862 1.20649 0.87958 0.98468 1.06176 1.18048 0.92394 0.85454 1.13878 1.41998 1.35679 1.05705 1.41880 1.19981 0.80968 0.88647 0.80269 1.90775 1.48812 1.55525 1.42217 1.19555 0.80730 0.88659 0.80837 1.90752 1.50599 1.56305 1.44847 1.48419 1.31258 1.10038 1.41249 1.22712 0.94155 0.93225 0.91292 1.23119 1.01994 0.94046 0.97139 1.19937 0.79795 0.93913 0.88460 1.86143 1.36609 1.53950 1.60184 1.21382 0.95936 1.14424 1.26852 0.93793 1.25873 1.03636 0.94616 0.93240 1.70088 1.31992 1.23527 1.31875 0.84801 0.76983 0.80693 0.73851 1.20932 1.27102 1.17353 1.22805 0.98742 0.80744 1.00075 0.89933 0.89897 0.90979 0.86630 0.87505 0.88505 0.72385 0.88022 0.90033 0.89617 0.90229 0.76686 0.92401 0.91681 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.29 8.61 71.24 0.61 -0.68 16 2 C 0.03 0.62 6.97 43.71 0.30 0.92 16 3 N -0.38 -9.32 12.06 -48.91 -0.59 -9.91 16 4 O 0.10 2.09 11.20 69.74 0.78 2.87 16 5 C -0.02 -0.29 7.52 25.17 0.19 -0.10 16 6 C -0.08 -0.51 10.45 71.24 0.74 0.23 16 7 C 0.00 0.01 6.61 38.14 0.25 0.26 16 8 N -0.60 -12.01 5.45 -304.18 -1.66 -13.67 16 9 C 0.52 13.28 7.32 87.23 0.64 13.92 16 10 O -0.50 -13.96 10.31 -3.39 -0.04 -14.00 16 11 C 0.52 15.64 7.91 87.23 0.69 16.33 16 12 O -0.55 -17.95 16.81 -3.29 -0.06 -18.00 16 13 N -0.58 -18.81 3.33 -813.53 -2.71 -21.52 16 14 C 0.11 3.34 6.05 86.86 0.53 3.86 16 15 C -0.12 -4.58 5.91 31.99 0.19 -4.40 16 16 C 0.22 8.93 0.68 -10.35 -0.01 8.93 16 17 O -0.56 -21.37 8.47 -148.98 -1.26 -22.63 16 18 C -0.55 -28.26 8.83 25.60 0.23 -28.04 16 19 H 0.04 2.54 7.80 -2.91 -0.02 2.52 16 20 C 0.03 1.43 5.47 84.65 0.46 1.89 16 21 N -0.94 -55.63 13.96 21.45 0.30 -55.33 16 22 Si 1.00 45.78 25.01 68.60 1.72 47.50 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.34 -16.17 7.11 99.48 0.71 -15.47 16 25 H -0.25 -10.62 5.09 99.48 0.51 -10.11 16 26 C 0.10 3.61 6.20 86.73 0.54 4.15 16 27 H 0.08 1.91 7.70 -2.39 -0.02 1.89 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.58 7.02 -2.39 -0.02 1.56 16 30 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.44 6.89 8.30 -92.71 -0.77 6.12 16 34 H 0.10 2.98 6.16 -2.39 -0.01 2.96 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.09 3.16 6.42 -2.39 -0.02 3.15 16 37 H 0.08 3.00 8.04 -2.39 -0.02 2.98 16 38 H 0.38 12.57 8.94 -74.06 -0.66 11.91 16 39 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 40 H 0.06 2.60 7.65 -2.39 -0.02 2.59 16 41 H 0.08 2.68 7.98 -2.39 -0.02 2.66 16 Total: -1.00 -68.18 339.43 1.33 -66.84 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.52 Total: 20.57 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.37 Total: 17.27 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.65 Total: -100.43 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.57 Total: -51.76 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.72 Total: 47.50 kcal Total: -68.18 1.33 -66.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118206444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.673 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds