Wall clock time and date at job start Tue Mar 31 2020 14:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36358 * 119.92115 * 2 1 4 4 C 1.40867 * 119.83474 * 179.97438 * 3 2 1 5 5 C 1.41136 * 120.15161 * 179.97438 * 4 3 2 6 6 H 1.07996 * 120.00540 * 24.61055 * 5 4 3 7 7 C 1.39868 * 120.00072 * 204.60805 * 5 4 3 8 8 N 1.30906 * 119.99823 * 17.96707 * 7 5 4 9 9 Si 1.86798 * 120.00176 * 197.97174 * 7 5 4 10 10 H 1.48497 * 109.47296 * 89.99936 * 9 7 5 11 11 H 1.48504 * 109.47037 * 209.99807 * 9 7 5 12 12 H 1.48499 * 109.47185 * 329.99253 * 9 7 5 13 13 C 1.40894 * 119.69062 * 359.97438 * 4 3 2 14 14 C 1.36321 * 119.83916 * 359.74485 * 13 4 3 15 15 C 1.39546 * 119.91799 * 179.97438 * 2 1 3 16 16 N 1.38867 * 119.84049 * 359.97438 * 15 2 1 17 17 C 1.46500 * 119.99684 * 180.02562 * 16 15 2 18 18 C 1.52999 * 109.46857 * 179.97438 * 17 16 15 19 19 C 1.52575 * 109.19592 * 63.77243 * 18 17 16 20 20 C 1.53035 * 109.99264 * 190.16657 * 19 18 17 21 21 S 1.81672 * 109.07824 * 296.49314 * 20 19 18 22 22 O 1.42101 * 108.66311 * 168.57993 * 21 20 19 23 23 O 1.42092 * 108.66596 * 299.82979 * 21 20 19 24 24 C 1.81672 * 101.30315 * 54.25472 * 21 20 19 25 25 C 1.52584 * 109.24186 * 185.00137 * 18 17 16 26 26 H 1.09008 * 109.47071 * 270.02075 * 1 2 3 27 27 H 1.08996 * 109.47053 * 30.01613 * 1 2 3 28 28 H 1.08997 * 109.47560 * 150.02128 * 1 2 3 29 29 H 1.07999 * 120.08087 * 359.96295 * 3 2 1 30 30 H 0.96997 * 120.00022 * 180.02562 * 8 7 5 31 31 H 1.08001 * 120.08463 * 180.02562 * 13 4 3 32 32 H 1.07999 * 119.92637 * 180.25563 * 14 13 4 33 33 H 0.97004 * 119.99842 * 0.02562 * 16 15 2 34 34 H 1.09007 * 109.47054 * 60.00232 * 17 16 15 35 35 H 1.08992 * 109.47356 * 300.00437 * 17 16 15 36 36 H 1.09000 * 109.24168 * 304.44507 * 18 17 16 37 37 H 1.08996 * 109.30200 * 70.05015 * 19 18 17 38 38 H 1.09006 * 109.46017 * 310.37435 * 19 18 17 39 39 H 1.09010 * 109.54861 * 176.59332 * 20 19 18 40 40 H 1.08998 * 109.55053 * 56.40387 * 20 19 18 41 41 H 1.08996 * 109.55315 * 65.55893 * 24 21 20 42 42 H 1.08998 * 109.55110 * 185.74758 * 24 21 20 43 43 H 1.08996 * 109.38934 * 49.59630 * 25 18 17 44 44 H 1.08999 * 109.30164 * 289.85450 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1797 0.0005 5 6 4.3066 2.3990 0.0000 6 1 3.8438 3.2941 0.3887 7 6 5.6104 2.4483 -0.5039 8 7 6.0481 1.4906 -1.2816 9 14 6.7271 3.8806 -0.0671 10 1 7.4830 3.5596 1.1702 11 1 7.6797 4.1230 -1.1803 12 1 5.9065 5.0980 0.1559 13 6 4.2919 -0.0453 0.0016 14 6 3.5988 -1.2192 0.0074 15 6 2.2030 -1.2095 0.0005 16 7 1.5036 -2.4092 0.0016 17 6 2.2308 -3.6809 0.0028 18 6 1.2317 -4.8397 0.0044 19 6 0.4213 -4.8052 -1.2879 20 6 -0.7460 -5.7909 -1.1999 21 16 -0.0888 -7.4776 -1.0469 22 8 -1.1547 -8.3514 -0.7013 23 8 0.7011 -7.7635 -2.1930 24 6 1.0090 -7.3031 0.3901 25 6 1.9903 -6.1575 0.1312 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6472 2.1171 -0.0006 30 1 6.9525 1.5246 -1.6308 31 1 5.3718 -0.0544 0.0025 32 1 4.1309 -2.1590 0.0124 33 1 0.5336 -2.4051 0.0016 34 1 2.8572 -3.7405 0.8929 35 1 2.8573 -3.7421 -0.8871 36 1 0.5566 -4.7307 0.8533 37 1 1.0645 -5.0798 -2.1239 38 1 0.0339 -3.7988 -1.4468 39 1 -1.3546 -5.7169 -2.1012 40 1 -1.3562 -5.5566 -0.3276 41 1 0.4160 -7.0819 1.2774 42 1 1.5609 -8.2306 0.5422 43 1 2.6953 -6.0909 0.9597 44 1 2.5352 -6.3499 -0.7930 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168296574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:04 Heat of formation + Delta-G solvation = -62.607551 kcal Electronic energy + Delta-G solvation = -24892.094005 eV Core-core repulsion = 21321.611664 eV Total energy + Delta-G solvation = -3570.482341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.93683 -37.81986 -37.14380 -36.31190 -34.74493 -33.08520 -32.20236 -31.33797 -29.79319 -28.10373 -25.82825 -24.75382 -24.14552 -23.35338 -21.05235 -19.99546 -19.89895 -19.14545 -17.29926 -16.85324 -16.66752 -16.27039 -16.02542 -15.39096 -15.03771 -14.93474 -14.31401 -14.18959 -13.76485 -13.63421 -13.36298 -13.09156 -12.84775 -12.66496 -12.50739 -12.41821 -12.29365 -12.14115 -11.94391 -11.85875 -11.61118 -11.49441 -11.41787 -11.10105 -11.05919 -10.95389 -10.76593 -10.64380 -10.42649 -10.30636 -9.68287 -9.32909 -9.25074 -8.56598 -7.38874 -6.65612 -6.40508 -4.06211 -0.29015 2.34244 2.89243 3.02095 3.13588 3.16912 3.31946 3.33718 3.57222 3.98833 4.03562 4.17476 4.27446 4.32368 4.46792 4.66140 4.71569 4.76747 4.95966 5.07928 5.24117 5.38676 5.44656 5.52300 5.69729 5.72058 5.80195 5.86619 5.94713 6.02099 6.09289 6.27172 6.28014 6.51061 6.83877 6.92256 7.20418 7.35788 7.51918 7.67837 7.81860 8.12971 8.25805 8.43933 8.64650 8.76348 9.03614 9.12295 10.34863 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028383 B = 0.002430 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.254721 B =11518.970565 C =12088.548613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.132 4.132 3 C -0.185 4.185 4 C 0.078 3.922 5 C -0.467 4.467 6 H 0.072 0.928 7 C 0.075 3.925 8 N -0.807 5.807 9 Si 0.903 3.097 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.265 1.265 13 C -0.126 4.126 14 C -0.162 4.162 15 C 0.094 3.906 16 N -0.761 5.761 17 C 0.145 3.855 18 C -0.119 4.119 19 C -0.108 4.108 20 C -0.600 4.600 21 S 2.414 3.586 22 O -0.949 6.949 23 O -0.937 6.937 24 C -0.600 4.600 25 C -0.105 4.105 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.276 0.724 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.384 0.616 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.092 0.908 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.213 -14.581 2.718 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C -0.205 4.205 4 C 0.075 3.925 5 C -0.498 4.498 6 H 0.090 0.910 7 C -0.141 4.141 8 N -0.434 5.434 9 Si 0.728 3.272 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.189 1.189 13 C -0.146 4.146 14 C -0.183 4.183 15 C -0.003 4.003 16 N -0.399 5.399 17 C 0.019 3.981 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.730 4.730 21 S 2.596 3.404 22 O -0.946 6.946 23 O -0.934 6.934 24 C -0.730 4.730 25 C -0.143 4.143 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.106 0.894 33 H 0.219 0.781 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.111 0.889 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.026 -15.506 2.049 18.058 hybrid contribution 0.344 1.297 0.637 1.486 sum -8.681 -14.209 2.687 16.867 Atomic orbital electron populations 1.20479 0.94137 1.00427 1.00047 1.18624 0.93317 0.92351 1.09265 1.20438 0.94250 0.94853 1.11007 1.17477 0.90643 0.93221 0.91200 1.19372 0.97765 0.95820 1.36842 0.90958 1.25795 0.98490 0.96961 0.92809 1.69854 1.17565 1.32430 1.23524 0.86405 0.79962 0.81963 0.78848 1.19554 1.20579 1.18875 1.20932 0.99673 0.91130 1.02897 1.20079 0.91574 0.97487 1.09200 1.17094 0.90815 0.84218 1.08163 1.43924 1.06502 1.01970 1.87554 1.20967 0.93434 0.82657 1.01038 1.21553 0.98293 0.95423 0.98477 1.21387 0.94146 1.00447 0.98678 1.30220 1.09461 1.21527 1.11797 1.08143 0.76761 0.77922 0.77578 1.93588 1.54323 1.62057 1.84647 1.93595 1.70119 1.83059 1.46613 1.30195 1.14458 1.08004 1.20304 1.21276 0.97379 0.90578 1.05105 0.93307 0.92866 0.93804 0.89093 0.91308 0.86437 0.89360 0.78147 0.92885 0.92797 0.89635 0.89410 0.88800 0.84763 0.84950 0.84898 0.84753 0.88935 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.55 36.01 0.34 -1.20 16 2 C -0.13 -2.78 5.86 -104.81 -0.61 -3.39 16 3 C -0.19 -4.45 9.37 -39.27 -0.37 -4.82 16 4 C 0.08 2.05 5.57 -106.80 -0.60 1.45 16 5 C -0.47 -12.49 9.03 -37.87 -0.34 -12.84 16 6 H 0.07 1.88 7.91 -52.49 -0.41 1.46 16 7 C 0.07 1.90 5.13 -17.34 -0.09 1.82 16 8 N -0.81 -21.12 10.96 55.54 0.61 -20.52 16 9 Si 0.90 19.03 29.60 -169.99 -5.03 14.00 16 10 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 13 C -0.13 -3.23 8.64 -39.27 -0.34 -3.57 16 14 C -0.16 -3.61 9.23 -39.77 -0.37 -3.98 16 15 C 0.09 1.91 6.65 -83.68 -0.56 1.36 16 16 N -0.76 -11.62 5.20 -58.50 -0.30 -11.93 16 17 C 0.14 1.78 4.25 -4.04 -0.02 1.76 16 18 C -0.12 -0.98 1.99 -91.05 -0.18 -1.16 16 19 C -0.11 -0.88 4.97 -26.93 -0.13 -1.02 16 20 C -0.60 -3.80 6.34 37.18 0.24 -3.57 16 21 S 2.41 19.27 5.30 -107.50 -0.57 18.70 16 22 O -0.95 -10.80 18.10 -57.82 -1.05 -11.85 16 23 O -0.94 -10.96 17.97 -57.82 -1.04 -12.00 16 24 C -0.60 -3.40 6.35 37.18 0.24 -3.16 16 25 C -0.10 -0.73 5.03 -26.92 -0.14 -0.86 16 26 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.04 0.62 6.53 -51.93 -0.34 0.28 16 29 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 31 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 32 H 0.09 1.78 6.68 -52.49 -0.35 1.43 16 33 H 0.38 5.10 5.53 -40.82 -0.23 4.88 16 34 H 0.05 0.67 7.87 -51.93 -0.41 0.27 16 35 H 0.05 0.72 7.94 -51.93 -0.41 0.30 16 36 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.09 0.75 8.03 -51.93 -0.42 0.33 16 38 H 0.09 0.83 6.86 -51.93 -0.36 0.48 16 39 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 44 H 0.09 0.63 8.02 -51.93 -0.42 0.21 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -33.38 359.24 -11.48 -44.86 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.59 Total: 6.48 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: -2.92 Total: -33.17 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.30 Total: -32.44 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -2.09 Total: -23.84 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: 19.27 SS G_CDS: -0.57 Total: 18.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.38 -11.48 -44.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168296574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.747 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds