Wall clock time and date at job start Tue Mar 31 2020 14:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36358 * 119.92115 * 2 1 4 4 C 1.40867 * 119.83474 * 179.97438 * 3 2 1 5 5 C 1.41136 * 120.15161 * 179.97438 * 4 3 2 6 6 H 1.07996 * 120.00540 * 24.61055 * 5 4 3 7 7 C 1.39868 * 120.00072 * 204.60805 * 5 4 3 8 8 N 1.30906 * 119.99823 * 17.96707 * 7 5 4 9 9 Si 1.86798 * 120.00176 * 197.97174 * 7 5 4 10 10 H 1.48497 * 109.47296 * 89.99936 * 9 7 5 11 11 H 1.48504 * 109.47037 * 209.99807 * 9 7 5 12 12 H 1.48499 * 109.47185 * 329.99253 * 9 7 5 13 13 C 1.40894 * 119.69062 * 359.97438 * 4 3 2 14 14 C 1.36321 * 119.83916 * 359.74485 * 13 4 3 15 15 C 1.39546 * 119.91799 * 179.97438 * 2 1 3 16 16 N 1.38867 * 119.84049 * 359.97438 * 15 2 1 17 17 C 1.46500 * 119.99684 * 180.02562 * 16 15 2 18 18 C 1.52999 * 109.46857 * 179.97438 * 17 16 15 19 19 C 1.52575 * 109.19592 * 63.77243 * 18 17 16 20 20 C 1.53035 * 109.99264 * 190.16657 * 19 18 17 21 21 S 1.81672 * 109.07824 * 296.49314 * 20 19 18 22 22 O 1.42101 * 108.66311 * 168.57993 * 21 20 19 23 23 O 1.42092 * 108.66596 * 299.82979 * 21 20 19 24 24 C 1.81672 * 101.30315 * 54.25472 * 21 20 19 25 25 C 1.52584 * 109.24186 * 185.00137 * 18 17 16 26 26 H 1.09008 * 109.47071 * 270.02075 * 1 2 3 27 27 H 1.08996 * 109.47053 * 30.01613 * 1 2 3 28 28 H 1.08997 * 109.47560 * 150.02128 * 1 2 3 29 29 H 1.07999 * 120.08087 * 359.96295 * 3 2 1 30 30 H 0.96997 * 120.00022 * 180.02562 * 8 7 5 31 31 H 1.08001 * 120.08463 * 180.02562 * 13 4 3 32 32 H 1.07999 * 119.92637 * 180.25563 * 14 13 4 33 33 H 0.97004 * 119.99842 * 0.02562 * 16 15 2 34 34 H 1.09007 * 109.47054 * 60.00232 * 17 16 15 35 35 H 1.08992 * 109.47356 * 300.00437 * 17 16 15 36 36 H 1.09000 * 109.24168 * 304.44507 * 18 17 16 37 37 H 1.08996 * 109.30200 * 70.05015 * 19 18 17 38 38 H 1.09006 * 109.46017 * 310.37435 * 19 18 17 39 39 H 1.09010 * 109.54861 * 176.59332 * 20 19 18 40 40 H 1.08998 * 109.55053 * 56.40387 * 20 19 18 41 41 H 1.08996 * 109.55315 * 65.55893 * 24 21 20 42 42 H 1.08998 * 109.55110 * 185.74758 * 24 21 20 43 43 H 1.08996 * 109.38934 * 49.59630 * 25 18 17 44 44 H 1.08999 * 109.30164 * 289.85450 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1797 0.0005 5 6 4.3066 2.3990 0.0000 6 1 3.8438 3.2941 0.3887 7 6 5.6104 2.4483 -0.5039 8 7 6.0481 1.4906 -1.2816 9 14 6.7271 3.8806 -0.0671 10 1 7.4830 3.5596 1.1702 11 1 7.6797 4.1230 -1.1803 12 1 5.9065 5.0980 0.1559 13 6 4.2919 -0.0453 0.0016 14 6 3.5988 -1.2192 0.0074 15 6 2.2030 -1.2095 0.0005 16 7 1.5036 -2.4092 0.0016 17 6 2.2308 -3.6809 0.0028 18 6 1.2317 -4.8397 0.0044 19 6 0.4213 -4.8052 -1.2879 20 6 -0.7460 -5.7909 -1.1999 21 16 -0.0888 -7.4776 -1.0469 22 8 -1.1547 -8.3514 -0.7013 23 8 0.7011 -7.7635 -2.1930 24 6 1.0090 -7.3031 0.3901 25 6 1.9903 -6.1575 0.1312 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6472 2.1171 -0.0006 30 1 6.9525 1.5246 -1.6308 31 1 5.3718 -0.0544 0.0025 32 1 4.1309 -2.1590 0.0124 33 1 0.5336 -2.4051 0.0016 34 1 2.8572 -3.7405 0.8929 35 1 2.8573 -3.7421 -0.8871 36 1 0.5566 -4.7307 0.8533 37 1 1.0645 -5.0798 -2.1239 38 1 0.0339 -3.7988 -1.4468 39 1 -1.3546 -5.7169 -2.1012 40 1 -1.3562 -5.5566 -0.3276 41 1 0.4160 -7.0819 1.2774 42 1 1.5609 -8.2306 0.5422 43 1 2.6953 -6.0909 0.9597 44 1 2.5352 -6.3499 -0.7930 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168296574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:04 Heat of formation + Delta-G solvation = -84.828810 kcal Electronic energy + Delta-G solvation = -24893.057591 eV Core-core repulsion = 21321.611664 eV Total energy + Delta-G solvation = -3571.445927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.20666 -38.96557 -37.92638 -37.04793 -36.29440 -34.62275 -33.01310 -32.74405 -31.17731 -29.38965 -27.46041 -26.17341 -24.98678 -24.37464 -22.18993 -21.71601 -21.10700 -19.77539 -18.73642 -18.09722 -17.58201 -17.27580 -16.83479 -16.74250 -16.53239 -15.75254 -15.45345 -15.05870 -14.99324 -14.69934 -14.40296 -14.22644 -14.16826 -13.88945 -13.60480 -13.49818 -13.35508 -13.19124 -13.12398 -13.05519 -12.75752 -12.71571 -12.62281 -12.41900 -12.26180 -12.13767 -12.00070 -11.74843 -11.49436 -11.44333 -11.12827 -11.01341 -10.88335 -10.23760 -9.18703 -8.52070 -8.07209 -5.97888 -0.87810 1.13746 1.19930 1.39778 1.51947 1.60094 1.79551 2.27571 2.75916 2.85207 2.87233 3.03820 3.60140 3.63643 3.74868 3.82479 3.85599 4.09671 4.20718 4.38745 4.40918 4.43540 4.48893 4.67596 4.71325 4.75305 4.89659 4.90843 4.97606 4.97820 5.03063 5.06658 5.13742 5.17750 5.22426 5.33756 5.36187 5.57111 5.74260 5.92114 6.03756 6.23745 6.45237 6.70665 6.91569 7.11399 7.20606 7.38982 8.49581 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028383 B = 0.002430 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.254721 B =11518.970565 C =12088.548613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.142 4.142 3 C -0.197 4.197 4 C 0.036 3.964 5 C -0.506 4.506 6 H 0.065 0.935 7 C 0.032 3.968 8 N -0.842 5.842 9 Si 0.975 3.025 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.262 1.262 13 C -0.150 4.150 14 C -0.174 4.174 15 C 0.116 3.884 16 N -0.748 5.748 17 C 0.137 3.863 18 C -0.110 4.110 19 C -0.113 4.113 20 C -0.586 4.586 21 S 2.413 3.587 22 O -0.988 6.988 23 O -0.984 6.984 24 C -0.582 4.582 25 C -0.108 4.108 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.281 0.719 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.399 0.601 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.149 0.851 43 H 0.105 0.895 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.964 -15.641 4.034 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C -0.218 4.218 4 C 0.033 3.967 5 C -0.538 4.538 6 H 0.083 0.917 7 C -0.180 4.180 8 N -0.470 5.470 9 Si 0.796 3.204 10 H -0.190 1.190 11 H -0.196 1.196 12 H -0.186 1.186 13 C -0.170 4.170 14 C -0.196 4.196 15 C 0.016 3.984 16 N -0.385 5.385 17 C 0.012 3.988 18 C -0.128 4.128 19 C -0.152 4.152 20 C -0.718 4.718 21 S 2.600 3.400 22 O -0.985 6.985 23 O -0.981 6.981 24 C -0.713 4.713 25 C -0.147 4.147 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.236 0.764 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.162 0.838 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.167 0.833 43 H 0.123 0.877 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.828 -16.632 3.344 20.126 hybrid contribution 0.761 1.497 0.254 1.698 sum -10.067 -15.135 3.597 18.530 Atomic orbital electron populations 1.20505 0.90322 1.02037 1.01729 1.19100 0.96167 0.91467 1.07851 1.20651 0.93672 0.96323 1.11110 1.17796 0.92046 0.93597 0.93251 1.19577 0.99384 0.95994 1.38834 0.91712 1.26581 0.99435 0.99781 0.92217 1.69924 1.18117 1.34394 1.24581 0.85323 0.77835 0.78461 0.78733 1.18978 1.19633 1.18569 1.20836 0.98865 0.92279 1.04987 1.20257 0.92867 0.97144 1.09344 1.17208 0.90357 0.86123 1.04701 1.43953 1.07278 1.01306 1.85962 1.21162 0.94476 0.82634 1.00525 1.21511 0.97696 0.94133 0.99493 1.21401 0.94686 1.00681 0.98414 1.30088 1.09110 1.18698 1.13859 1.07881 0.76234 0.78298 0.77555 1.93539 1.55795 1.64021 1.85148 1.93536 1.70970 1.84286 1.49348 1.30039 1.13689 1.08312 1.19299 1.21305 0.97756 0.90217 1.05450 0.91411 0.92479 0.91084 0.89080 0.90883 0.88689 0.87611 0.76437 0.92780 0.93965 0.87052 0.90445 0.89033 0.83848 0.81952 0.81930 0.83251 0.87678 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.62 9.55 71.24 0.68 -1.94 16 2 C -0.14 -5.77 5.86 -19.99 -0.12 -5.89 16 3 C -0.20 -9.65 9.37 22.47 0.21 -9.44 16 4 C 0.04 1.98 5.57 -21.27 -0.12 1.86 16 5 C -0.51 -28.49 9.03 23.38 0.21 -28.28 16 6 H 0.06 3.56 7.91 -2.91 -0.02 3.53 16 7 C 0.03 1.67 5.13 85.23 0.44 2.11 16 8 N -0.84 -46.09 10.96 21.82 0.24 -45.85 16 9 Si 0.97 40.29 29.60 68.60 2.03 42.32 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 13 C -0.15 -7.96 8.64 22.47 0.19 -7.76 16 14 C -0.17 -7.81 9.23 22.15 0.20 -7.60 16 15 C 0.12 4.53 6.65 38.67 0.26 4.78 16 16 N -0.75 -20.35 5.20 -338.99 -1.76 -22.11 16 17 C 0.14 2.97 4.25 86.38 0.37 3.34 16 18 C -0.11 -1.39 1.99 -11.07 -0.02 -1.41 16 19 C -0.11 -1.49 4.97 30.47 0.15 -1.34 16 20 C -0.59 -5.41 6.34 71.99 0.46 -4.95 16 21 S 2.41 33.91 5.30 -56.49 -0.30 33.61 16 22 O -0.99 -21.07 18.10 -127.38 -2.31 -23.38 16 23 O -0.98 -22.65 17.97 -127.38 -2.29 -24.93 16 24 C -0.58 -4.41 6.35 72.00 0.46 -3.96 16 25 C -0.11 -1.14 5.03 30.47 0.15 -0.98 16 26 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.06 1.65 8.08 -2.39 -0.02 1.63 16 28 H 0.07 1.69 6.53 -2.39 -0.02 1.67 16 29 H 0.09 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 31 H 0.10 5.38 6.16 -2.91 -0.02 5.36 16 32 H 0.11 4.24 6.68 -2.91 -0.02 4.22 16 33 H 0.40 8.73 5.53 -92.71 -0.51 8.22 16 34 H 0.05 1.21 7.87 -2.38 -0.02 1.19 16 35 H 0.04 1.04 7.94 -2.39 -0.02 1.03 16 36 H 0.11 0.91 8.09 -2.39 -0.02 0.89 16 37 H 0.08 1.19 8.03 -2.39 -0.02 1.17 16 38 H 0.09 1.28 6.86 -2.38 -0.02 1.26 16 39 H 0.14 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.10 0.92 8.06 -2.39 -0.02 0.90 16 44 H 0.08 1.00 8.02 -2.39 -0.02 0.98 16 Total: -1.00 -77.01 359.24 -0.37 -77.38 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.49 Total: 24.43 kcal Atomic # 6 Polarization: -64.98 SS G_CDS: 3.52 Total: -61.46 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -1.52 Total: -67.96 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -4.59 Total: -48.31 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: 33.91 SS G_CDS: -0.30 Total: 33.61 kcal Total: -77.01 -0.37 -77.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168296574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.447 kcal (2) G-P(sol) polarization free energy of solvation -77.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds