Wall clock time and date at job start Tue Mar 31 2020 14:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34739 * 116.99819 * 2 1 4 4 O 1.21486 * 120.00240 * 359.97438 * 3 2 1 5 5 C 1.47590 * 119.99914 * 179.97438 * 3 2 1 6 6 N 1.32935 * 119.81125 * 2.81799 * 5 3 2 7 7 C 1.31314 * 121.71529 * 179.72252 * 6 5 3 8 8 C 1.38864 * 121.12801 * 0.55114 * 7 6 5 9 9 N 1.48009 * 120.25555 * 179.72005 * 8 7 6 10 10 O 1.21797 * 120.00435 * 141.93868 * 9 8 7 11 11 O 1.21807 * 120.00047 * 321.66032 * 9 8 7 12 12 C 1.38179 * 119.48711 * 359.43729 * 8 7 6 13 13 C 1.50702 * 120.79078 * 180.25492 * 12 8 7 14 14 C 1.39606 * 118.42483 * 0.28253 * 12 8 7 15 15 N 1.38811 * 120.56973 * 180.02562 * 14 12 8 16 16 C 1.46897 * 111.00094 * 273.54874 * 15 14 12 17 17 C 1.52995 * 109.47080 * 175.29371 * 16 15 14 18 18 C 1.53006 * 109.47211 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47299 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99775 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00046 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99866 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00068 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46930 * 60.00003 * 23 21 19 25 25 H 1.48499 * 109.46958 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46877 * 300.00078 * 23 21 19 27 27 H 1.08996 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47305 * 300.00525 * 1 2 3 29 29 H 1.09000 * 109.46993 * 59.99931 * 1 2 3 30 30 H 1.07997 * 119.43476 * 180.28678 * 7 6 5 31 31 H 1.08997 * 109.46955 * 89.69276 * 13 12 8 32 32 H 1.09000 * 109.47276 * 209.69443 * 13 12 8 33 33 H 1.08995 * 109.46826 * 329.69237 * 13 12 8 34 34 H 1.00896 * 110.99519 * 37.50552 * 15 14 12 35 35 H 1.08997 * 109.47376 * 295.30347 * 16 15 14 36 36 H 1.09002 * 109.46962 * 55.29648 * 16 15 14 37 37 H 1.09004 * 109.47609 * 300.00382 * 17 16 15 38 38 H 1.09002 * 109.46997 * 60.00299 * 17 16 15 39 39 H 1.08992 * 109.46956 * 300.00969 * 18 17 16 40 40 H 1.08998 * 109.46343 * 60.00441 * 18 17 16 41 41 H 0.97002 * 119.99621 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4020 2.2194 -0.0005 5 6 3.5375 1.2778 0.0006 6 7 4.2578 0.1620 -0.0556 7 6 5.5707 0.1874 -0.0627 8 6 6.2658 1.3879 0.0001 9 7 7.7459 1.3938 -0.0029 10 8 8.3503 2.2602 -0.6090 11 8 8.3595 0.5350 0.6051 12 6 5.5649 2.5773 0.0593 13 6 6.2894 3.8973 0.1224 14 6 4.1698 2.5272 0.0599 15 7 3.4215 3.6950 0.1177 16 6 3.2121 4.1178 1.5088 17 6 2.4874 5.4651 1.5287 18 6 2.2688 5.9052 2.9777 19 6 1.5544 7.2320 2.9974 20 1 1.2830 7.7130 2.0692 21 6 1.2472 7.8318 4.2002 22 7 1.5781 7.2463 5.3304 23 14 0.3611 9.4761 4.2246 24 1 -0.9526 9.3405 3.5455 25 1 0.1501 9.9038 5.6309 26 1 1.1818 10.4912 3.5167 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 6.1193 -0.7415 -0.1138 31 1 6.4670 4.2629 -0.8889 32 1 5.6822 4.6193 0.6684 33 1 7.2429 3.7643 0.6334 34 1 3.8547 4.4290 -0.4221 35 1 2.6091 3.3730 2.0281 36 1 4.1763 4.2165 2.0076 37 1 3.0905 6.2099 1.0094 38 1 1.5232 5.3664 1.0300 39 1 1.6655 5.1604 3.4966 40 1 3.2328 6.0038 3.4768 41 1 1.3623 7.6685 6.1766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168429095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:12 Heat of formation + Delta-G solvation = -60.981025 kcal Electronic energy + Delta-G solvation = -27238.902231 eV Core-core repulsion = 23122.197208 eV Total energy + Delta-G solvation = -4116.705024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.62199 -42.38960 -40.96659 -38.65617 -37.83142 -37.45357 -35.98075 -35.18687 -33.70995 -31.67461 -30.08516 -29.21708 -28.06171 -27.48645 -25.09920 -24.79443 -23.50247 -22.41719 -22.14188 -20.35313 -20.21084 -19.48566 -18.91471 -18.53377 -18.26884 -17.82875 -17.57155 -17.17575 -16.62433 -16.36503 -16.23706 -15.85642 -15.26083 -14.61319 -14.54912 -14.48062 -14.31150 -14.03427 -13.88602 -13.70467 -13.56712 -13.04742 -12.85108 -12.75944 -12.65756 -12.56033 -12.43595 -12.27792 -11.97039 -11.81838 -11.73666 -11.55795 -11.44799 -11.42084 -11.25781 -10.87316 -10.56829 -9.81906 -8.22072 -6.32984 -1.74059 -0.65404 -0.41922 -0.02109 0.98671 1.31919 1.39749 1.42308 1.50227 1.99493 2.37691 2.44616 2.60900 2.78600 3.04213 3.11807 3.14411 3.43563 3.82054 3.96469 4.01592 4.14540 4.27871 4.31311 4.32929 4.34774 4.44712 4.51364 4.70297 4.74924 4.82855 4.94548 5.05666 5.14551 5.16367 5.46154 5.57067 5.70500 5.82360 5.86666 6.03489 6.22008 6.30783 6.56306 6.83439 7.36608 8.89583 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003393 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.991342 B = 8251.504781 C =10207.647717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.508 3.492 4 O -0.465 6.465 5 C 0.129 3.871 6 N -0.421 5.421 7 C 0.166 3.834 8 C -0.063 4.063 9 N 0.029 4.971 10 O -0.143 6.143 11 O -0.151 6.151 12 C -0.016 4.016 13 C -0.136 4.136 14 C 0.120 3.880 15 N -0.620 5.620 16 C 0.086 3.914 17 C -0.090 4.090 18 C 0.027 3.973 19 C -0.543 4.543 20 H 0.062 0.938 21 C 0.001 3.999 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.269 1.269 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.137 0.863 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.218 0.782 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.373 0.627 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.054 0.946 39 H -0.013 1.013 40 H -0.004 1.004 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.316 -15.570 -14.325 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.348 3.652 4 O -0.349 6.349 5 C -0.007 4.007 6 N -0.132 5.132 7 C 0.002 3.998 8 C -0.148 4.148 9 N 0.551 4.449 10 O -0.362 6.362 11 O -0.368 6.368 12 C -0.028 4.028 13 C -0.192 4.192 14 C 0.018 3.982 15 N -0.250 5.250 16 C -0.039 4.039 17 C -0.128 4.128 18 C -0.011 4.011 19 C -0.580 4.580 20 H 0.080 0.920 21 C -0.197 4.197 22 N -0.574 5.574 23 Si 0.788 3.212 24 H -0.194 1.194 25 H -0.210 1.210 26 H -0.189 1.189 27 H 0.155 0.845 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.234 0.766 31 H 0.146 0.854 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.198 0.802 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.005 0.995 40 H 0.015 0.985 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.168 -16.280 -14.207 22.217 hybrid contribution 0.871 1.826 0.719 2.147 sum 6.039 -14.454 -13.488 20.672 Atomic orbital electron populations 1.23644 0.73938 1.06049 1.02765 1.86635 1.25219 1.30801 1.83525 1.20421 0.87461 0.82472 0.74820 1.91019 1.65262 1.36124 1.42449 1.20569 0.92164 0.88893 0.99068 1.68146 1.06269 1.28053 1.10772 1.23233 0.88912 0.97076 0.90556 1.22450 0.80509 0.97716 1.14172 1.43460 1.02938 0.99838 0.98620 1.94567 1.69325 1.30651 1.41642 1.94595 1.68476 1.31967 1.41739 1.21186 0.93311 0.96630 0.91670 1.21259 1.00615 0.90702 1.06622 1.19303 0.88516 0.93002 0.97429 1.57464 1.48876 1.04912 1.13782 1.21928 0.99177 0.97618 0.85208 1.21381 0.99864 0.93776 0.97807 1.18938 0.95062 0.94865 0.92212 1.21638 1.37731 1.05967 0.92712 0.92010 1.25957 0.96702 1.01778 0.95275 1.70086 1.48502 1.40791 0.97991 0.85526 0.79223 0.79322 0.77151 1.19363 1.20950 1.18923 0.84504 0.92199 0.91366 0.76584 0.85422 0.89160 0.89509 0.80185 0.92639 0.93690 0.91468 0.92741 0.99509 0.98539 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.35 -8.30 10.38 -56.50 -0.59 -8.88 16 3 C 0.51 14.07 7.93 70.29 0.56 14.63 16 4 O -0.46 -15.16 14.24 19.88 0.28 -14.88 16 5 C 0.13 3.22 6.76 41.91 0.28 3.50 16 6 N -0.42 -9.12 10.11 -184.56 -1.87 -10.99 16 7 C 0.17 2.87 10.82 84.92 0.92 3.79 16 8 C -0.06 -1.22 6.50 36.51 0.24 -0.98 16 9 N 0.03 0.60 4.14 -46.14 -0.19 0.41 16 10 O -0.14 -3.09 16.80 18.89 0.32 -2.77 16 11 O -0.15 -3.32 18.98 18.88 0.36 -2.96 16 12 C -0.02 -0.33 5.92 -19.55 -0.12 -0.44 16 13 C -0.14 -2.26 8.22 71.24 0.59 -1.67 16 14 C 0.12 2.83 5.26 38.83 0.20 3.03 16 15 N -0.62 -16.08 4.30 -337.63 -1.45 -17.53 16 16 C 0.09 2.74 4.86 86.30 0.42 3.16 16 17 C -0.09 -3.50 5.36 30.59 0.16 -3.34 16 18 C 0.03 1.38 4.97 29.85 0.15 1.53 16 19 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 20 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 21 C 0.00 0.04 5.46 84.65 0.46 0.50 16 22 N -0.93 -56.35 13.29 21.44 0.28 -56.07 16 23 Si 0.96 43.75 29.54 68.60 2.03 45.77 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 27 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.22 2.32 8.03 -2.91 -0.02 2.29 16 31 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.56 5.86 -2.39 -0.01 1.54 16 33 H 0.09 1.51 6.67 -2.39 -0.02 1.50 16 34 H 0.37 7.90 7.48 -89.70 -0.67 7.23 16 35 H 0.06 1.99 7.87 -2.39 -0.02 1.98 16 36 H 0.04 1.35 7.08 -2.39 -0.02 1.33 16 37 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H -0.01 -0.77 8.14 -2.39 -0.02 -0.78 16 40 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -69.15 359.02 4.88 -64.26 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.41 Total: 8.36 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 5.30 Total: -4.72 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -3.22 Total: -84.18 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: 0.37 Total: -29.49 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -69.15 4.88 -64.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.280 kcal (2) G-P(sol) polarization free energy of solvation -69.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds