Wall clock time and date at job start Tue Mar 31 2020 14:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21253 * 120.00055 * 2 1 4 4 C 1.47186 * 120.00229 * 179.97438 * 2 1 3 5 5 C 1.39895 * 120.13497 * 355.36451 * 4 2 1 6 6 C 1.37915 * 119.96996 * 179.97438 * 5 4 2 7 7 C 1.38296 * 120.25112 * 359.72820 * 6 5 4 8 8 C 1.39010 * 120.27640 * 0.54197 * 7 6 5 9 9 N 1.39883 * 119.98427 * 179.72722 * 8 7 6 10 10 C 1.34774 * 119.99963 * 335.37014 * 9 8 7 11 11 O 1.21562 * 120.00340 * 354.84831 * 10 9 8 12 12 C 1.47860 * 119.99908 * 175.11759 * 10 9 8 13 13 C 1.39935 * 120.02234 * 359.45451 * 12 10 9 14 14 C 1.38330 * 120.35190 * 179.69390 * 13 12 10 15 15 C 1.37758 * 120.41339 * 0.60337 * 14 13 12 16 16 C 1.40749 * 120.04133 * 359.67761 * 15 14 13 17 17 C 1.41437 * 120.17411 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99724 * 143.73947 * 17 16 15 19 19 C 1.39932 * 120.00248 * 323.73937 * 17 16 15 20 20 N 1.30825 * 120.00348 * 172.97485 * 19 17 16 21 21 Si 1.86807 * 119.99918 * 352.96731 * 19 17 16 22 22 H 1.48502 * 109.46947 * 88.13630 * 21 19 17 23 23 H 1.48495 * 109.47179 * 208.13882 * 21 19 17 24 24 H 1.48502 * 109.47170 * 328.14105 * 21 19 17 25 25 C 1.39004 * 120.02878 * 179.72732 * 12 10 9 26 26 C 1.38579 * 120.02489 * 359.45881 * 8 7 6 27 27 C 1.50697 * 120.12700 * 180.24720 * 26 8 7 28 28 H 1.09000 * 109.47179 * 270.00149 * 1 2 3 29 29 H 1.08997 * 109.47384 * 30.00278 * 1 2 3 30 30 H 1.08997 * 109.46983 * 150.00522 * 1 2 3 31 31 H 1.07999 * 120.01477 * 359.97438 * 5 4 2 32 32 H 1.08001 * 119.87168 * 180.02562 * 6 5 4 33 33 H 1.07999 * 119.85953 * 180.27613 * 7 6 5 34 34 H 0.96995 * 119.99871 * 155.37264 * 9 8 7 35 35 H 1.07994 * 119.82605 * 359.97114 * 13 12 10 36 36 H 1.08000 * 119.79303 * 180.30008 * 14 13 12 37 37 H 1.08002 * 119.97456 * 179.69796 * 15 14 13 38 38 H 0.96996 * 120.00189 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.20338 * 359.97438 * 25 12 10 40 40 H 1.09000 * 109.47372 * 96.87217 * 27 26 8 41 41 H 1.09002 * 109.47337 * 216.87826 * 27 26 8 42 42 H 1.08998 * 109.47191 * 336.87741 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5498 -2.4858 0.0989 6 6 2.2428 -3.6782 0.0986 7 6 3.6220 -3.6825 -0.0043 8 6 4.3216 -2.4848 -0.0969 9 7 5.7169 -2.4961 -0.1950 10 6 6.4175 -3.5443 0.2813 11 8 5.8467 -4.4357 0.8792 12 6 7.8812 -3.6072 0.0819 13 6 8.5380 -2.5843 -0.6113 14 6 9.9080 -2.6330 -0.7964 15 6 10.6398 -3.6947 -0.3115 16 6 9.9958 -4.7357 0.3831 17 6 10.7446 -5.8267 0.8826 18 1 10.4756 -6.2797 1.8254 19 6 11.8338 -6.3193 0.1552 20 7 12.6090 -7.2346 0.6775 21 14 12.1808 -5.6700 -1.5616 22 1 13.0514 -4.4704 -1.4705 23 1 12.8656 -6.7193 -2.3586 24 1 10.9013 -5.3040 -2.2205 25 6 8.6052 -4.6852 0.5778 26 6 3.6368 -1.2800 -0.0977 27 6 4.3926 0.0194 -0.2036 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 0.4725 -2.4871 0.1750 32 1 1.7061 -4.6123 0.1741 33 1 4.1579 -4.6201 -0.0084 34 1 6.1802 -1.7495 -0.6058 35 1 7.9729 -1.7501 -1.0000 36 1 10.4063 -1.8362 -1.3285 37 1 11.7085 -3.7279 -0.4643 38 1 13.3638 -7.5763 0.1731 39 1 8.1020 -5.4789 1.1100 40 1 4.3973 0.3535 -1.2411 41 1 3.9091 0.7727 0.4186 42 1 5.4180 -0.1280 0.1352 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188682406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:52 Heat of formation + Delta-G solvation = -21.052996 kcal Electronic energy + Delta-G solvation = -25695.474913 eV Core-core repulsion = 21991.350561 eV Total energy + Delta-G solvation = -3704.124351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90167 -39.75981 -38.24306 -37.32698 -34.94755 -33.71920 -32.54072 -31.79543 -30.73827 -30.21871 -28.77772 -27.05037 -25.35636 -24.31284 -23.22695 -21.39852 -20.85085 -20.75889 -19.47746 -18.31389 -17.39291 -16.55711 -16.11440 -15.96901 -15.59845 -15.53700 -15.23453 -14.79142 -14.75470 -14.12645 -14.01673 -13.70953 -13.58625 -13.49070 -12.95859 -12.85747 -12.63940 -12.54930 -12.32823 -12.25683 -12.13750 -12.04274 -11.73617 -11.38874 -11.18482 -10.85764 -10.62343 -10.50481 -10.04028 -9.86837 -9.72529 -9.49204 -9.25210 -8.89966 -8.17517 -7.95183 -7.83014 -6.98847 -4.64285 0.52509 1.11616 1.74206 2.25403 2.39183 3.00338 3.11275 3.13869 3.17941 3.33351 3.73094 3.85475 3.88149 4.41357 4.63032 4.65471 4.77612 4.92605 5.03602 5.05890 5.15683 5.18075 5.26778 5.45322 5.50623 5.58376 5.61401 5.71878 5.77608 5.85734 6.01800 6.14365 6.22319 6.28923 6.33228 6.42156 6.50586 6.54621 6.86346 6.91703 7.09408 7.22212 7.32097 7.33267 7.51184 7.64376 7.81832 8.22292 8.34390 8.41706 8.65128 10.03659 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028587 B = 0.002615 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.234502 B =10705.622591 C =11346.365095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.397 3.603 3 O -0.456 6.456 4 C -0.162 4.162 5 C -0.096 4.096 6 C -0.118 4.118 7 C -0.098 4.098 8 C 0.147 3.853 9 N -0.671 5.671 10 C 0.565 3.435 11 O -0.524 6.524 12 C -0.114 4.114 13 C -0.209 4.209 14 C -0.084 4.084 15 C -0.213 4.213 16 C 0.081 3.919 17 C -0.445 4.445 18 H 0.095 0.905 19 C 0.080 3.920 20 N -0.813 5.813 21 Si 0.912 3.088 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.245 1.245 25 C -0.125 4.125 26 C -0.060 4.060 27 C -0.131 4.131 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.413 0.587 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.286 0.714 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.737 10.691 -4.491 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.277 3.723 3 O -0.333 6.333 4 C -0.163 4.163 5 C -0.115 4.115 6 C -0.137 4.137 7 C -0.118 4.118 8 C 0.051 3.949 9 N -0.316 5.316 10 C 0.357 3.643 11 O -0.401 6.401 12 C -0.117 4.117 13 C -0.229 4.229 14 C -0.103 4.103 15 C -0.233 4.233 16 C 0.078 3.922 17 C -0.474 4.474 18 H 0.113 0.887 19 C -0.137 4.137 20 N -0.438 5.438 21 Si 0.739 3.261 22 H -0.195 1.195 23 H -0.218 1.218 24 H -0.168 1.168 25 C -0.145 4.145 26 C -0.063 4.063 27 C -0.187 4.187 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.171 0.829 34 H 0.251 0.749 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.510 10.365 -4.043 21.597 hybrid contribution 0.577 0.373 -0.910 1.140 sum -17.933 10.738 -4.953 21.481 Atomic orbital electron populations 1.22230 0.93843 1.04854 1.04716 1.22459 0.91531 0.87580 0.70757 1.90461 1.71281 1.34700 1.36878 1.20029 0.93069 0.94901 1.08332 1.21335 0.99796 0.91410 0.98966 1.21023 0.93725 0.98144 1.00769 1.21817 0.94256 0.98629 0.97118 1.17639 0.83268 0.93364 1.00644 1.43660 1.04244 1.23473 1.60185 1.18966 0.88136 0.80436 0.76716 1.90663 1.71279 1.38081 1.40103 1.19315 0.89739 0.98262 1.04423 1.20429 0.94741 0.99590 1.08106 1.20541 0.93547 0.97459 0.98730 1.21349 0.98817 0.95618 1.07493 1.17750 0.91251 0.92520 0.90636 1.19493 1.08594 1.12137 1.07131 0.88734 1.26112 0.93468 0.93637 1.00528 1.69611 1.12677 1.23096 1.38373 0.86328 0.80363 0.77838 0.81552 1.19457 1.21759 1.16824 1.21367 0.93257 0.97099 1.02819 1.19896 0.92940 0.94284 0.99188 1.21140 0.99278 0.94763 1.03523 0.88522 0.89504 0.89463 0.85165 0.85134 0.82859 0.74855 0.88513 0.87934 0.87442 0.90300 0.86320 0.90817 0.87902 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.16 9.66 36.01 0.35 -0.81 16 2 C 0.40 3.96 7.19 -30.68 -0.22 3.74 16 3 O -0.46 -5.77 13.97 5.58 0.08 -5.69 16 4 C -0.16 -1.79 5.87 -105.09 -0.62 -2.41 16 5 C -0.10 -0.90 9.33 -39.08 -0.36 -1.27 16 6 C -0.12 -1.28 10.02 -39.68 -0.40 -1.68 16 7 C -0.10 -1.38 8.72 -39.27 -0.34 -1.72 16 8 C 0.15 2.11 6.41 -83.77 -0.54 1.57 16 9 N -0.67 -10.13 4.93 -10.75 -0.05 -10.18 16 10 C 0.57 10.53 7.58 -12.32 -0.09 10.44 16 11 O -0.52 -10.85 13.46 5.31 0.07 -10.78 16 12 C -0.11 -2.31 5.87 -105.04 -0.62 -2.93 16 13 C -0.21 -3.83 9.54 -38.91 -0.37 -4.20 16 14 C -0.08 -1.64 10.01 -39.72 -0.40 -2.04 16 15 C -0.21 -4.77 6.98 -38.81 -0.27 -5.04 16 16 C 0.08 1.98 5.06 -106.87 -0.54 1.44 16 17 C -0.44 -11.67 9.60 -37.73 -0.36 -12.03 16 18 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 19 C 0.08 2.05 5.49 -17.35 -0.10 1.96 16 20 N -0.81 -21.27 13.93 55.55 0.77 -20.50 16 21 Si 0.91 19.99 24.44 -169.99 -4.15 15.84 16 22 H -0.27 -5.63 6.59 56.52 0.37 -5.25 16 23 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.24 -5.45 6.75 56.52 0.38 -5.07 16 25 C -0.13 -2.87 9.34 -38.44 -0.36 -3.23 16 26 C -0.06 -0.77 5.94 -103.94 -0.62 -1.39 16 27 C -0.13 -1.53 8.50 36.00 0.31 -1.23 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.35 6.66 -51.93 -0.35 0.01 16 31 H 0.13 0.77 6.48 -52.49 -0.34 0.43 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.15 2.45 5.74 -52.49 -0.30 2.15 16 34 H 0.41 5.33 5.26 -40.82 -0.21 5.11 16 35 H 0.10 1.42 6.40 -52.49 -0.34 1.08 16 36 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.11 2.38 4.61 -52.49 -0.24 2.14 16 38 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 39 H 0.12 2.76 7.64 -52.49 -0.40 2.36 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.28 5.56 -51.93 -0.29 1.00 16 42 H 0.06 0.66 6.62 -51.93 -0.34 0.32 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -29.28 344.13 -8.18 -37.46 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.53 Total: 9.49 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -5.55 Total: -20.83 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.72 Total: -30.68 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.15 Total: -16.47 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.15 Total: 15.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.28 -8.18 -37.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.404 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds