Wall clock time and date at job start Tue Mar 31 2020 14:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21253 * 120.00055 * 2 1 4 4 C 1.47186 * 120.00229 * 179.97438 * 2 1 3 5 5 C 1.39895 * 120.13497 * 355.36451 * 4 2 1 6 6 C 1.37915 * 119.96996 * 179.97438 * 5 4 2 7 7 C 1.38296 * 120.25112 * 359.72820 * 6 5 4 8 8 C 1.39010 * 120.27640 * 0.54197 * 7 6 5 9 9 N 1.39883 * 119.98427 * 179.72722 * 8 7 6 10 10 C 1.34774 * 119.99963 * 335.37014 * 9 8 7 11 11 O 1.21562 * 120.00340 * 354.84831 * 10 9 8 12 12 C 1.47860 * 119.99908 * 175.11759 * 10 9 8 13 13 C 1.39935 * 120.02234 * 359.45451 * 12 10 9 14 14 C 1.38330 * 120.35190 * 179.69390 * 13 12 10 15 15 C 1.37758 * 120.41339 * 0.60337 * 14 13 12 16 16 C 1.40749 * 120.04133 * 359.67761 * 15 14 13 17 17 C 1.41437 * 120.17411 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99724 * 143.73947 * 17 16 15 19 19 C 1.39932 * 120.00248 * 323.73937 * 17 16 15 20 20 N 1.30825 * 120.00348 * 172.97485 * 19 17 16 21 21 Si 1.86807 * 119.99918 * 352.96731 * 19 17 16 22 22 H 1.48502 * 109.46947 * 88.13630 * 21 19 17 23 23 H 1.48495 * 109.47179 * 208.13882 * 21 19 17 24 24 H 1.48502 * 109.47170 * 328.14105 * 21 19 17 25 25 C 1.39004 * 120.02878 * 179.72732 * 12 10 9 26 26 C 1.38579 * 120.02489 * 359.45881 * 8 7 6 27 27 C 1.50697 * 120.12700 * 180.24720 * 26 8 7 28 28 H 1.09000 * 109.47179 * 270.00149 * 1 2 3 29 29 H 1.08997 * 109.47384 * 30.00278 * 1 2 3 30 30 H 1.08997 * 109.46983 * 150.00522 * 1 2 3 31 31 H 1.07999 * 120.01477 * 359.97438 * 5 4 2 32 32 H 1.08001 * 119.87168 * 180.02562 * 6 5 4 33 33 H 1.07999 * 119.85953 * 180.27613 * 7 6 5 34 34 H 0.96995 * 119.99871 * 155.37264 * 9 8 7 35 35 H 1.07994 * 119.82605 * 359.97114 * 13 12 10 36 36 H 1.08000 * 119.79303 * 180.30008 * 14 13 12 37 37 H 1.08002 * 119.97456 * 179.69796 * 15 14 13 38 38 H 0.96996 * 120.00189 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.20338 * 359.97438 * 25 12 10 40 40 H 1.09000 * 109.47372 * 96.87217 * 27 26 8 41 41 H 1.09002 * 109.47337 * 216.87826 * 27 26 8 42 42 H 1.08998 * 109.47191 * 336.87741 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5498 -2.4858 0.0989 6 6 2.2428 -3.6782 0.0986 7 6 3.6220 -3.6825 -0.0043 8 6 4.3216 -2.4848 -0.0969 9 7 5.7169 -2.4961 -0.1950 10 6 6.4175 -3.5443 0.2813 11 8 5.8467 -4.4357 0.8792 12 6 7.8812 -3.6072 0.0819 13 6 8.5380 -2.5843 -0.6113 14 6 9.9080 -2.6330 -0.7964 15 6 10.6398 -3.6947 -0.3115 16 6 9.9958 -4.7357 0.3831 17 6 10.7446 -5.8267 0.8826 18 1 10.4756 -6.2797 1.8254 19 6 11.8338 -6.3193 0.1552 20 7 12.6090 -7.2346 0.6775 21 14 12.1808 -5.6700 -1.5616 22 1 13.0514 -4.4704 -1.4705 23 1 12.8656 -6.7193 -2.3586 24 1 10.9013 -5.3040 -2.2205 25 6 8.6052 -4.6852 0.5778 26 6 3.6368 -1.2800 -0.0977 27 6 4.3926 0.0194 -0.2036 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 0.4725 -2.4871 0.1750 32 1 1.7061 -4.6123 0.1741 33 1 4.1579 -4.6201 -0.0084 34 1 6.1802 -1.7495 -0.6058 35 1 7.9729 -1.7501 -1.0000 36 1 10.4063 -1.8362 -1.3285 37 1 11.7085 -3.7279 -0.4643 38 1 13.3638 -7.5763 0.1731 39 1 8.1020 -5.4789 1.1100 40 1 4.3973 0.3535 -1.2411 41 1 3.9091 0.7727 0.4186 42 1 5.4180 -0.1280 0.1352 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:51 Heat of formation + Delta-G solvation = -37.773050 kcal Electronic energy + Delta-G solvation = -25696.199949 eV Core-core repulsion = 21991.350561 eV Total energy + Delta-G solvation = -3704.849387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03913 -40.84931 -39.54478 -38.71497 -36.16858 -35.52335 -33.50729 -32.97370 -32.14637 -31.77839 -29.67609 -27.94680 -27.14006 -25.55257 -24.44245 -22.65329 -22.28371 -22.07070 -20.57697 -19.81674 -18.59823 -18.07667 -17.53834 -16.94376 -16.72011 -16.67005 -16.49712 -16.07043 -15.88633 -15.57279 -15.45840 -14.93823 -14.63602 -14.54833 -14.50398 -14.36818 -13.93604 -13.47358 -13.35288 -13.17704 -13.16276 -13.01549 -12.92111 -12.84476 -12.61749 -12.36773 -12.23237 -11.75662 -11.66627 -11.63308 -11.19153 -10.91302 -10.41115 -9.84593 -9.74114 -9.63178 -9.09193 -8.86275 -6.60845 -0.36080 -0.09975 0.39410 0.68126 1.24263 1.38581 1.39885 1.46796 1.83295 1.89512 2.10228 2.60883 2.78931 3.12759 3.34657 3.60078 3.77887 3.90058 4.05577 4.16727 4.19274 4.28777 4.35158 4.42639 4.52045 4.60382 4.66441 4.71380 4.73943 4.79667 4.83434 4.84269 5.09480 5.14723 5.18713 5.21662 5.32157 5.36861 5.41388 5.48873 5.54704 5.62459 5.80031 5.91842 6.02461 6.25490 6.33118 6.58679 6.59114 6.72399 6.96116 8.22750 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028587 B = 0.002615 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.234502 B =10705.622591 C =11346.365095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.397 3.603 3 O -0.489 6.489 4 C -0.172 4.172 5 C -0.073 4.073 6 C -0.119 4.119 7 C -0.120 4.120 8 C 0.117 3.883 9 N -0.653 5.653 10 C 0.564 3.436 11 O -0.554 6.554 12 C -0.117 4.117 13 C -0.175 4.175 14 C -0.084 4.084 15 C -0.215 4.215 16 C 0.064 3.936 17 C -0.488 4.488 18 H 0.050 0.950 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.969 3.031 22 H -0.245 1.245 23 H -0.281 1.281 24 H -0.249 1.249 25 C -0.152 4.152 26 C -0.068 4.068 27 C -0.127 4.127 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.177 0.823 32 H 0.156 0.844 33 H 0.127 0.873 34 H 0.423 0.577 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.112 0.888 38 H 0.293 0.707 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.761 14.328 -6.930 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.279 3.721 3 O -0.367 6.367 4 C -0.173 4.173 5 C -0.091 4.091 6 C -0.137 4.137 7 C -0.141 4.141 8 C 0.023 3.977 9 N -0.299 5.299 10 C 0.356 3.644 11 O -0.433 6.433 12 C -0.121 4.121 13 C -0.194 4.194 14 C -0.102 4.102 15 C -0.234 4.234 16 C 0.062 3.938 17 C -0.519 4.519 18 H 0.068 0.932 19 C -0.173 4.173 20 N -0.490 5.490 21 Si 0.791 3.209 22 H -0.170 1.170 23 H -0.208 1.208 24 H -0.173 1.173 25 C -0.173 4.173 26 C -0.071 4.071 27 C -0.184 4.184 28 H 0.133 0.867 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.194 0.806 32 H 0.173 0.827 33 H 0.144 0.856 34 H 0.264 0.736 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.567 14.039 -6.487 26.539 hybrid contribution 1.162 -0.550 -0.131 1.293 sum -20.405 13.489 -6.618 25.340 Atomic orbital electron populations 1.22271 0.90071 1.06393 1.06271 1.22991 0.93406 0.86369 0.69376 1.90460 1.72339 1.35511 1.38436 1.20445 0.92653 0.96506 1.07707 1.21800 1.01891 0.89824 0.95612 1.21338 0.92435 1.00109 0.99813 1.21791 0.95938 0.97597 0.98748 1.17772 0.82587 0.94204 1.03148 1.43345 1.04849 1.22427 1.59259 1.18721 0.87616 0.81119 0.76977 1.90663 1.71593 1.39488 1.41582 1.19553 0.90894 0.97850 1.03761 1.21053 0.94900 0.99204 1.04264 1.21068 0.93848 0.97367 0.97872 1.21556 0.99409 0.95783 1.06652 1.17804 0.91580 0.92756 0.91686 1.19417 1.11066 1.14462 1.06931 0.93186 1.26871 0.92897 0.93649 1.03895 1.69666 1.14005 1.25161 1.40139 0.85482 0.80209 0.78333 0.76836 1.16988 1.20816 1.17266 1.21281 0.93304 0.98272 1.04415 1.20102 0.94056 0.93862 0.99085 1.21116 0.99215 0.94079 1.03943 0.86681 0.88959 0.87018 0.80617 0.82654 0.85569 0.73625 0.83512 0.83137 0.87080 0.89645 0.88683 0.89931 0.88651 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 9.66 71.24 0.69 -0.65 16 2 C 0.40 6.59 7.19 28.04 0.20 6.80 16 3 O -0.49 -11.26 13.97 -2.95 -0.04 -11.30 16 4 C -0.17 -3.27 5.87 -20.17 -0.12 -3.39 16 5 C -0.07 -1.07 9.33 22.59 0.21 -0.86 16 6 C -0.12 -2.28 10.02 22.21 0.22 -2.06 16 7 C -0.12 -3.34 8.72 22.47 0.20 -3.15 16 8 C 0.12 3.25 6.41 38.12 0.24 3.50 16 9 N -0.65 -18.84 4.93 -306.20 -1.51 -20.34 16 10 C 0.56 21.07 7.58 86.79 0.66 21.73 16 11 O -0.55 -23.95 13.46 -3.91 -0.05 -24.00 16 12 C -0.12 -4.69 5.87 -20.14 -0.12 -4.81 16 13 C -0.17 -5.75 9.54 22.70 0.22 -5.54 16 14 C -0.08 -2.90 10.01 22.18 0.22 -2.68 16 15 C -0.21 -9.32 6.98 22.77 0.16 -9.16 16 16 C 0.06 3.24 5.06 -21.32 -0.11 3.13 16 17 C -0.49 -27.83 9.60 23.47 0.23 -27.61 16 18 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 19 C 0.04 2.11 5.49 85.25 0.47 2.58 16 20 N -0.86 -48.10 13.93 21.82 0.30 -47.80 16 21 Si 0.97 41.46 24.44 68.60 1.68 43.14 16 22 H -0.25 -9.49 6.59 99.48 0.66 -8.84 16 23 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.25 -10.67 6.75 99.48 0.67 -10.00 16 25 C -0.15 -7.36 9.34 23.01 0.21 -7.14 16 26 C -0.07 -1.62 5.94 -19.42 -0.12 -1.73 16 27 C -0.13 -2.72 8.50 71.24 0.61 -2.12 16 28 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.23 6.66 -2.39 -0.02 0.22 16 31 H 0.18 0.95 6.48 -2.91 -0.02 0.93 16 32 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.13 4.20 5.74 -2.91 -0.02 4.18 16 34 H 0.42 9.69 5.26 -92.71 -0.49 9.20 16 35 H 0.15 3.41 6.40 -2.91 -0.02 3.39 16 36 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 37 H 0.11 4.73 4.61 -2.91 -0.01 4.71 16 38 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 39 H 0.09 4.90 7.64 -2.91 -0.02 4.88 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.10 2.23 5.56 -2.39 -0.01 2.22 16 42 H 0.06 1.25 6.62 -2.39 -0.02 1.23 16 Total: -1.00 -71.48 344.13 4.97 -66.51 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.51 Total: 26.94 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 4.07 Total: -33.15 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -1.20 Total: -68.14 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.09 Total: -35.30 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.68 Total: 43.14 kcal Total: -71.48 4.97 -66.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.742 kcal (2) G-P(sol) polarization free energy of solvation -71.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds