Wall clock time and date at job start Tue Mar 31 2020 13:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 120.00456 * 2 1 4 4 C 1.38210 * 120.00113 * 180.29690 * 3 2 1 5 5 C 1.38256 * 119.99677 * 359.70663 * 4 3 2 6 6 C 1.50706 * 119.99609 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.58387 * 172.18619 * 6 5 4 8 8 C 1.53191 * 109.58871 * 51.90370 * 6 5 4 9 9 C 1.53035 * 109.31046 * 185.57743 * 8 6 5 10 10 C 1.53040 * 109.54061 * 61.36337 * 9 8 6 11 11 C 1.53190 * 109.31517 * 298.63268 * 10 9 8 12 12 N 1.46929 * 109.58417 * 292.60962 * 6 5 4 13 13 S 1.65589 * 120.63320 * 353.39873 * 12 6 5 14 14 O 1.42099 * 106.40275 * 197.52053 * 13 12 6 15 15 O 1.42103 * 106.40563 * 330.44185 * 13 12 6 16 16 C 1.76201 * 107.21987 * 83.97924 * 13 12 6 17 17 H 1.08003 * 119.99738 * 5.17853 * 16 13 12 18 18 C 1.37876 * 120.00350 * 185.17680 * 16 13 12 19 19 N 1.31515 * 119.99728 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99996 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47204 * 90.00462 * 20 18 16 22 22 H 1.48506 * 109.46906 * 210.00437 * 20 18 16 23 23 H 1.48505 * 109.47291 * 330.00191 * 20 18 16 24 24 C 1.38211 * 120.00668 * 0.02562 * 5 4 3 25 25 C 1.38215 * 119.99866 * 179.75448 * 2 1 3 26 26 C 1.50704 * 119.99761 * 359.97438 * 25 2 1 27 27 H 1.08995 * 109.47314 * 270.25294 * 1 2 3 28 28 H 1.09008 * 109.46587 * 30.24944 * 1 2 3 29 29 H 1.09000 * 109.47445 * 150.24579 * 1 2 3 30 30 H 1.08000 * 119.99533 * 0.02764 * 3 2 1 31 31 H 1.08003 * 120.00044 * 179.72734 * 4 3 2 32 32 H 1.08997 * 109.49215 * 305.52842 * 8 6 5 33 33 H 1.08999 * 109.49862 * 65.59336 * 8 6 5 34 34 H 1.09004 * 109.46232 * 181.38372 * 9 8 6 35 35 H 1.09002 * 109.46323 * 301.33846 * 9 8 6 36 36 H 1.09001 * 109.49363 * 58.58554 * 10 9 8 37 37 H 1.08995 * 109.49818 * 178.67901 * 10 9 8 38 38 H 1.08991 * 109.59076 * 174.41646 * 11 10 9 39 39 H 1.09001 * 109.58638 * 294.70782 * 11 10 9 40 40 H 0.96999 * 119.99570 * 179.97438 * 19 18 16 41 41 H 1.07992 * 120.00644 * 179.97438 * 24 5 4 42 42 H 1.08997 * 109.47432 * 269.73294 * 26 25 2 43 43 H 1.09007 * 109.46623 * 149.73056 * 26 25 2 44 44 H 1.09001 * 109.47128 * 29.73693 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0062 5 6 4.2717 -0.0002 -0.0063 6 6 5.7787 -0.0002 -0.0125 7 1 6.1446 -1.0173 0.1280 8 6 6.2970 0.8928 1.1192 9 6 7.8205 0.9998 1.0220 10 6 8.2045 1.6408 -0.3136 11 6 7.7079 0.7562 -1.4615 12 7 6.2660 0.5290 -1.2936 13 16 5.2103 0.8630 -2.5248 14 8 5.9901 0.9501 -3.7095 15 8 4.1215 -0.0380 -2.3755 16 6 4.5642 2.4764 -2.2347 17 1 4.9452 3.0718 -1.4182 18 6 3.5722 2.9787 -3.0500 19 7 3.1080 2.2534 -4.0440 20 14 2.8878 4.6895 -2.7428 21 1 3.6788 5.6843 -3.5108 22 1 1.4694 4.7410 -3.1797 23 1 2.9711 5.0031 -1.2936 24 6 3.5806 -1.1971 -0.0007 25 6 2.1981 -1.1970 0.0051 26 6 1.4445 -2.5021 0.0113 27 1 -0.3633 0.0045 1.0276 28 1 -0.3633 0.8878 -0.5178 29 1 -0.3634 -0.8922 -0.5100 30 1 1.6584 2.1326 0.0005 31 1 4.1206 2.1325 -0.0107 32 1 5.8561 1.8856 1.0300 33 1 6.0229 0.4580 2.0804 34 1 8.1943 1.6149 1.8407 35 1 8.2594 0.0042 1.0865 36 1 7.7456 2.6266 -0.3892 37 1 9.2885 1.7382 -0.3721 38 1 7.8907 1.2554 -2.4129 39 1 8.2349 -0.1977 -1.4420 40 1 2.4099 2.6067 -4.6173 41 1 4.1205 -2.1324 -0.0012 42 1 1.2673 -2.8145 1.0404 43 1 2.0313 -3.2628 -0.5036 44 1 0.4898 -2.3728 -0.4987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192965700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:16 Heat of formation + Delta-G solvation = -67.405995 kcal Electronic energy + Delta-G solvation = -27668.304618 eV Core-core repulsion = 24097.614201 eV Total energy + Delta-G solvation = -3570.690417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.38414 -37.62865 -35.28345 -33.83183 -33.19001 -33.05621 -31.67146 -31.46467 -30.04965 -27.09671 -26.15209 -25.46787 -23.61219 -22.68467 -21.48893 -19.99219 -19.44615 -18.34675 -17.12954 -16.27945 -15.43670 -15.02798 -14.96478 -14.73172 -14.22761 -14.13764 -13.74383 -13.68856 -13.59958 -13.30501 -12.91225 -12.80755 -12.45013 -12.28779 -12.05785 -11.96453 -11.81188 -11.44869 -11.25847 -11.16678 -11.11469 -11.00503 -10.83953 -10.61968 -10.56663 -10.43997 -10.19721 -10.09206 -9.99874 -9.86447 -9.63042 -9.15906 -8.78365 -8.10365 -7.75616 -7.45510 -6.62056 -5.16869 2.09926 2.35805 2.44085 3.06607 3.14399 3.18866 4.08150 4.40641 4.69742 4.81141 5.07847 5.18015 5.20573 5.39833 5.44501 5.57655 5.58102 5.68926 5.74891 5.80541 5.84778 5.91524 5.96869 5.99493 6.03844 6.09086 6.12073 6.16176 6.22785 6.24356 6.32559 6.36215 6.39909 6.42077 6.52386 6.62099 6.69677 6.89131 6.94161 7.01620 7.32732 7.37491 7.41443 7.47567 7.73207 7.93771 8.02000 8.95687 10.31088 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.008704 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.616555 B = 3216.246900 C = 4701.284098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.108 4.108 4 C -0.074 4.074 5 C -0.100 4.100 6 C 0.209 3.791 7 H 0.067 0.933 8 C -0.128 4.128 9 C -0.113 4.113 10 C -0.135 4.135 11 C 0.123 3.877 12 N -1.009 6.009 13 S 2.710 3.290 14 O -1.018 7.018 15 O -0.975 6.975 16 C -1.009 5.009 17 H 0.099 0.901 18 C 0.141 3.859 19 N -0.841 5.841 20 Si 0.905 3.095 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.065 4.065 25 C -0.097 4.097 26 C -0.108 4.108 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.287 0.713 41 H 0.106 0.894 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 -3.365 11.468 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.127 4.127 4 C -0.093 4.093 5 C -0.102 4.102 6 C 0.103 3.897 7 H 0.085 0.915 8 C -0.167 4.167 9 C -0.151 4.151 10 C -0.174 4.174 11 C -0.003 4.003 12 N -0.844 5.844 13 S 2.812 3.188 14 O -1.009 7.009 15 O -0.965 6.965 16 C -1.142 5.142 17 H 0.117 0.883 18 C -0.077 4.077 19 N -0.470 5.470 20 Si 0.729 3.271 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.186 1.186 24 C -0.084 4.084 25 C -0.097 4.097 26 C -0.165 4.165 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.576 -4.022 10.568 11.417 hybrid contribution -0.355 1.630 0.165 1.676 sum 1.221 -2.392 10.733 11.064 Atomic orbital electron populations 1.20790 0.92640 1.02352 1.01058 1.19510 0.94850 0.93043 1.00817 1.20627 0.94207 0.96450 1.01383 1.21126 0.94530 0.97452 0.96192 1.19528 0.93395 0.94325 1.02913 1.19486 0.89820 0.96507 0.83907 0.91509 1.21996 0.95629 1.01126 0.97944 1.21449 0.95957 1.00545 0.97140 1.21923 1.00204 1.00061 0.95248 1.21206 0.81271 0.98747 0.99041 1.58415 1.16934 1.80713 1.28312 1.00692 0.71432 0.76339 0.70344 1.93329 1.72243 1.89396 1.45890 1.93473 1.52030 1.66198 1.84799 1.30624 1.33250 1.25411 1.24900 0.88275 1.24571 0.92876 0.98464 0.91776 1.69900 1.25193 1.37392 1.14543 0.86400 0.78431 0.82444 0.79783 1.19423 1.20105 1.18572 1.20372 0.93178 0.96261 0.98552 1.19336 0.93496 0.94054 1.02825 1.20742 0.99968 0.94836 1.00922 0.92170 0.92167 0.91734 0.87440 0.85189 0.90941 0.91475 0.92339 0.92275 0.91260 0.91661 0.89174 0.92692 0.90217 0.87550 0.92345 0.92243 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.60 36.01 0.35 -1.36 16 2 C -0.08 -1.55 5.88 -104.62 -0.62 -2.17 16 3 C -0.11 -2.20 9.70 -39.58 -0.38 -2.59 16 4 C -0.07 -1.54 5.78 -39.58 -0.23 -1.77 16 5 C -0.10 -1.98 2.67 -104.62 -0.28 -2.26 16 6 C 0.21 3.70 3.10 -68.75 -0.21 3.49 16 7 H 0.07 1.08 7.90 -51.93 -0.41 0.67 16 8 C -0.13 -1.86 5.19 -26.61 -0.14 -2.00 16 9 C -0.11 -1.43 5.88 -26.69 -0.16 -1.59 16 10 C -0.14 -1.90 6.08 -26.61 -0.16 -2.06 16 11 C 0.12 2.14 6.41 -3.71 -0.02 2.12 16 12 N -1.01 -20.59 3.29 -107.69 -0.35 -20.94 16 13 S 2.71 71.23 4.38 -107.50 -0.47 70.76 16 14 O -1.02 -30.17 16.56 -57.17 -0.95 -31.12 16 15 O -0.97 -27.19 13.36 -57.17 -0.76 -27.95 16 16 C -1.01 -26.55 6.77 30.60 0.21 -26.34 16 17 H 0.10 2.40 6.81 -52.48 -0.36 2.04 16 18 C 0.14 3.81 5.46 -17.82 -0.10 3.72 16 19 N -0.84 -24.33 13.09 55.43 0.73 -23.60 16 20 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.06 -1.24 8.19 -39.58 -0.32 -1.57 16 25 C -0.10 -1.80 5.88 -104.62 -0.62 -2.41 16 26 C -0.11 -1.58 9.61 36.01 0.35 -1.24 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.91 8.09 -51.92 -0.42 0.49 16 29 H 0.06 0.91 5.94 -51.93 -0.31 0.61 16 30 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.13 2.69 4.89 -52.48 -0.26 2.43 16 32 H 0.07 1.12 6.79 -51.93 -0.35 0.76 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.70 6.96 -51.93 -0.36 1.34 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.29 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.11 1.81 7.96 -52.49 -0.42 1.39 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.84 8.09 -51.92 -0.42 0.42 16 44 H 0.06 0.88 5.94 -51.93 -0.31 0.58 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -33.67 348.63 -10.47 -44.14 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.55 Total: 6.26 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: -2.34 Total: -38.03 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.37 Total: -44.54 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -1.71 Total: -59.07 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 71.23 SS G_CDS: -0.47 Total: 70.76 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.67 -10.47 -44.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192965700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.263 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds