Wall clock time and date at job start Tue Mar 31 2020 13:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 120.00456 * 2 1 4 4 C 1.38210 * 120.00113 * 180.29690 * 3 2 1 5 5 C 1.38256 * 119.99677 * 359.70663 * 4 3 2 6 6 C 1.50706 * 119.99609 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.58387 * 172.18619 * 6 5 4 8 8 C 1.53191 * 109.58871 * 51.90370 * 6 5 4 9 9 C 1.53035 * 109.31046 * 185.57743 * 8 6 5 10 10 C 1.53040 * 109.54061 * 61.36337 * 9 8 6 11 11 C 1.53190 * 109.31517 * 298.63268 * 10 9 8 12 12 N 1.46929 * 109.58417 * 292.60962 * 6 5 4 13 13 S 1.65589 * 120.63320 * 353.39873 * 12 6 5 14 14 O 1.42099 * 106.40275 * 197.52053 * 13 12 6 15 15 O 1.42103 * 106.40563 * 330.44185 * 13 12 6 16 16 C 1.76201 * 107.21987 * 83.97924 * 13 12 6 17 17 H 1.08003 * 119.99738 * 5.17853 * 16 13 12 18 18 C 1.37876 * 120.00350 * 185.17680 * 16 13 12 19 19 N 1.31515 * 119.99728 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99996 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47204 * 90.00462 * 20 18 16 22 22 H 1.48506 * 109.46906 * 210.00437 * 20 18 16 23 23 H 1.48505 * 109.47291 * 330.00191 * 20 18 16 24 24 C 1.38211 * 120.00668 * 0.02562 * 5 4 3 25 25 C 1.38215 * 119.99866 * 179.75448 * 2 1 3 26 26 C 1.50704 * 119.99761 * 359.97438 * 25 2 1 27 27 H 1.08995 * 109.47314 * 270.25294 * 1 2 3 28 28 H 1.09008 * 109.46587 * 30.24944 * 1 2 3 29 29 H 1.09000 * 109.47445 * 150.24579 * 1 2 3 30 30 H 1.08000 * 119.99533 * 0.02764 * 3 2 1 31 31 H 1.08003 * 120.00044 * 179.72734 * 4 3 2 32 32 H 1.08997 * 109.49215 * 305.52842 * 8 6 5 33 33 H 1.08999 * 109.49862 * 65.59336 * 8 6 5 34 34 H 1.09004 * 109.46232 * 181.38372 * 9 8 6 35 35 H 1.09002 * 109.46323 * 301.33846 * 9 8 6 36 36 H 1.09001 * 109.49363 * 58.58554 * 10 9 8 37 37 H 1.08995 * 109.49818 * 178.67901 * 10 9 8 38 38 H 1.08991 * 109.59076 * 174.41646 * 11 10 9 39 39 H 1.09001 * 109.58638 * 294.70782 * 11 10 9 40 40 H 0.96999 * 119.99570 * 179.97438 * 19 18 16 41 41 H 1.07992 * 120.00644 * 179.97438 * 24 5 4 42 42 H 1.08997 * 109.47432 * 269.73294 * 26 25 2 43 43 H 1.09007 * 109.46623 * 149.73056 * 26 25 2 44 44 H 1.09001 * 109.47128 * 29.73693 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0062 5 6 4.2717 -0.0002 -0.0063 6 6 5.7787 -0.0002 -0.0125 7 1 6.1446 -1.0173 0.1280 8 6 6.2970 0.8928 1.1192 9 6 7.8205 0.9998 1.0220 10 6 8.2045 1.6408 -0.3136 11 6 7.7079 0.7562 -1.4615 12 7 6.2660 0.5290 -1.2936 13 16 5.2103 0.8630 -2.5248 14 8 5.9901 0.9501 -3.7095 15 8 4.1215 -0.0380 -2.3755 16 6 4.5642 2.4764 -2.2347 17 1 4.9452 3.0718 -1.4182 18 6 3.5722 2.9787 -3.0500 19 7 3.1080 2.2534 -4.0440 20 14 2.8878 4.6895 -2.7428 21 1 3.6788 5.6843 -3.5108 22 1 1.4694 4.7410 -3.1797 23 1 2.9711 5.0031 -1.2936 24 6 3.5806 -1.1971 -0.0007 25 6 2.1981 -1.1970 0.0051 26 6 1.4445 -2.5021 0.0113 27 1 -0.3633 0.0045 1.0276 28 1 -0.3633 0.8878 -0.5178 29 1 -0.3634 -0.8922 -0.5100 30 1 1.6584 2.1326 0.0005 31 1 4.1206 2.1325 -0.0107 32 1 5.8561 1.8856 1.0300 33 1 6.0229 0.4580 2.0804 34 1 8.1943 1.6149 1.8407 35 1 8.2594 0.0042 1.0865 36 1 7.7456 2.6266 -0.3892 37 1 9.2885 1.7382 -0.3721 38 1 7.8907 1.2554 -2.4129 39 1 8.2349 -0.1977 -1.4420 40 1 2.4099 2.6067 -4.6173 41 1 4.1205 -2.1324 -0.0012 42 1 1.2673 -2.8145 1.0404 43 1 2.0313 -3.2628 -0.5036 44 1 0.4898 -2.3728 -0.4987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192965700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:15 Heat of formation + Delta-G solvation = -88.934962 kcal Electronic energy + Delta-G solvation = -27669.238184 eV Core-core repulsion = 24097.614201 eV Total energy + Delta-G solvation = -3571.623983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.79992 -38.96684 -37.33587 -35.93983 -35.12565 -34.57424 -33.05247 -32.84771 -31.33288 -28.59461 -27.96149 -26.85761 -24.94933 -23.99462 -22.93073 -21.30652 -20.99259 -20.18826 -18.85113 -18.18292 -17.03039 -16.77308 -16.51081 -16.25986 -15.89133 -15.53120 -15.16008 -15.12075 -14.95666 -14.81274 -14.32465 -14.17796 -13.93844 -13.81821 -13.49255 -13.40743 -13.18810 -13.04768 -12.98273 -12.71090 -12.60732 -12.43473 -12.34837 -12.25586 -12.14056 -12.03914 -11.75710 -11.65946 -11.49423 -11.26039 -11.18368 -11.08954 -10.77487 -9.66703 -9.24362 -8.92699 -8.64479 -7.26603 0.40882 0.74162 0.86599 1.29949 1.31588 1.44345 2.21312 2.68079 2.83794 3.23083 3.71572 3.90303 3.99582 4.06252 4.15312 4.17702 4.23326 4.32450 4.39413 4.47652 4.53684 4.59035 4.64350 4.71366 4.80243 4.80679 4.89380 4.93893 4.96212 5.00368 5.04553 5.11401 5.17961 5.21315 5.28378 5.29338 5.31546 5.47331 5.53914 5.57489 5.62128 5.85799 5.92789 5.98728 6.01690 6.13783 6.50787 6.88818 8.29580 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.008704 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.616555 B = 3216.246900 C = 4701.284098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.098 4.098 3 C -0.134 4.134 4 C -0.091 4.091 5 C -0.113 4.113 6 C 0.202 3.798 7 H 0.086 0.914 8 C -0.124 4.124 9 C -0.108 4.108 10 C -0.131 4.131 11 C 0.112 3.888 12 N -1.007 6.007 13 S 2.711 3.289 14 O -1.064 7.064 15 O -1.001 7.001 16 C -1.012 5.012 17 H 0.111 0.889 18 C 0.088 3.912 19 N -0.890 5.890 20 Si 0.963 3.037 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.244 1.244 24 C -0.083 4.083 25 C -0.109 4.109 26 C -0.106 4.106 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.292 0.708 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 -3.465 13.975 14.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.098 4.098 3 C -0.152 4.152 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.097 3.903 7 H 0.103 0.897 8 C -0.163 4.163 9 C -0.145 4.145 10 C -0.170 4.170 11 C -0.013 4.013 12 N -0.845 5.845 13 S 2.814 3.186 14 O -1.055 7.055 15 O -0.991 6.991 16 C -1.145 5.145 17 H 0.129 0.871 18 C -0.125 4.125 19 N -0.521 5.521 20 Si 0.783 3.217 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.167 1.167 24 C -0.102 4.102 25 C -0.109 4.109 26 C -0.162 4.162 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.139 0.861 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.935 -4.130 13.082 13.854 hybrid contribution -0.417 1.576 -0.579 1.730 sum 1.518 -2.555 12.503 12.851 Atomic orbital electron populations 1.20833 0.90199 1.02633 1.02871 1.19963 0.96893 0.92756 1.00173 1.20880 0.94527 0.97385 1.02401 1.21134 0.94874 0.97563 0.97425 1.19798 0.94655 0.94232 1.02725 1.19826 0.88883 0.98148 0.83416 0.89654 1.21988 0.97116 0.99724 0.97478 1.21458 0.94269 1.01941 0.96829 1.21919 1.01883 0.98502 0.94664 1.21507 0.79659 1.00628 0.99546 1.57950 1.17547 1.80855 1.28159 1.00269 0.71359 0.76382 0.70552 1.93262 1.73204 1.89866 1.49166 1.93430 1.53450 1.66715 1.85457 1.30820 1.32999 1.25800 1.24912 0.87056 1.25585 0.93095 1.02550 0.91222 1.70003 1.26403 1.39663 1.16067 0.85511 0.78109 0.77331 0.80745 1.18673 1.19197 1.16673 1.20755 0.93991 0.96837 0.98606 1.19861 0.93780 0.95651 1.01624 1.20796 0.99713 0.92832 1.02843 0.89474 0.92665 0.90645 0.87282 0.86148 0.92363 0.89191 0.89729 0.90515 0.92726 0.88531 0.91712 0.90287 0.89840 0.85928 0.89568 0.92012 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.17 9.60 71.24 0.68 -2.49 16 2 C -0.10 -3.66 5.88 -19.86 -0.12 -3.78 16 3 C -0.13 -5.51 9.70 22.27 0.22 -5.29 16 4 C -0.09 -3.83 5.78 22.27 0.13 -3.71 16 5 C -0.11 -4.44 2.67 -19.86 -0.05 -4.49 16 6 C 0.20 6.95 3.10 44.23 0.14 7.08 16 7 H 0.09 2.59 7.90 -2.39 -0.02 2.57 16 8 C -0.12 -3.33 5.19 30.67 0.16 -3.17 16 9 C -0.11 -2.32 5.88 30.62 0.18 -2.14 16 10 C -0.13 -3.36 6.08 30.67 0.19 -3.17 16 11 C 0.11 3.79 6.41 86.36 0.55 4.34 16 12 N -1.01 -41.07 3.29 -494.63 -1.63 -42.69 16 13 S 2.71 146.76 4.38 -56.49 -0.25 146.52 16 14 O -1.06 -65.80 16.56 -128.00 -2.12 -67.92 16 15 O -1.00 -57.55 13.36 -128.00 -1.71 -59.26 16 16 C -1.01 -54.45 6.77 67.73 0.46 -53.99 16 17 H 0.11 5.50 6.81 -2.91 -0.02 5.48 16 18 C 0.09 4.87 5.46 84.65 0.46 5.33 16 19 N -0.89 -53.14 13.09 21.45 0.28 -52.86 16 20 Si 0.96 41.53 29.54 68.60 2.03 43.56 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 23 H -0.24 -9.69 7.11 99.48 0.71 -8.98 16 24 C -0.08 -3.15 8.19 22.27 0.18 -2.97 16 25 C -0.11 -3.95 5.88 -19.86 -0.12 -4.07 16 26 C -0.11 -2.87 9.61 71.24 0.68 -2.19 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.63 8.09 -2.38 -0.02 1.62 16 29 H 0.07 2.00 5.94 -2.39 -0.01 1.99 16 30 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.12 5.11 4.89 -2.91 -0.01 5.09 16 32 H 0.06 1.73 6.79 -2.39 -0.02 1.71 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 1.45 8.14 -2.38 -0.02 1.44 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 2.51 6.96 -2.39 -0.02 2.49 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 40 H 0.29 15.97 8.31 -92.71 -0.77 15.20 16 41 H 0.12 4.05 7.96 -2.91 -0.02 4.03 16 42 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.06 1.64 8.09 -2.38 -0.02 1.62 16 44 H 0.07 1.82 5.94 -2.39 -0.01 1.80 16 Total: -1.00 -76.08 348.63 1.35 -74.73 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 1.00 Total: 32.63 kcal Atomic # 6 Polarization: -78.45 SS G_CDS: 3.75 Total: -74.70 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -1.34 Total: -95.55 kcal Atomic # 8 Polarization: -123.36 SS G_CDS: -3.83 Total: -127.19 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 146.76 SS G_CDS: -0.25 Total: 146.52 kcal Total: -76.08 1.35 -74.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192965700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.201 kcal (2) G-P(sol) polarization free energy of solvation -76.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds