Wall clock time and date at job start Tue Mar 31 2020 14:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 120.00259 * 2 1 4 4 C 1.38232 * 120.00089 * 180.27965 * 3 2 1 5 5 C 1.38238 * 120.00054 * 359.47990 * 4 3 2 6 6 C 1.38234 * 119.99691 * 0.49524 * 5 4 3 7 7 C 1.50703 * 120.00150 * 179.76590 * 6 5 4 8 8 C 1.38238 * 120.00332 * 359.78682 * 6 5 4 9 9 S 1.76195 * 120.00195 * 179.97438 * 8 6 5 10 10 O 1.42099 * 106.40229 * 203.20914 * 9 8 6 11 11 O 1.42101 * 106.40346 * 336.12340 * 9 8 6 12 12 N 1.65604 * 107.22243 * 89.66653 * 9 8 6 13 13 C 1.46925 * 120.62911 * 269.72142 * 12 9 8 14 14 C 1.52752 * 109.00917 * 233.58106 * 13 12 9 15 15 C 1.53043 * 109.38523 * 305.59014 * 14 13 12 16 16 C 1.53043 * 109.53677 * 61.23762 * 15 14 13 17 17 H 1.08997 * 109.50184 * 58.58965 * 16 15 14 18 18 C 1.50701 * 109.49862 * 178.68707 * 16 15 14 19 19 H 1.08001 * 119.99988 * 119.83654 * 18 16 15 20 20 C 1.37875 * 119.99714 * 299.84217 * 18 16 15 21 21 N 1.31513 * 120.00497 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99842 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46890 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46977 * 119.99645 * 22 20 18 25 25 H 1.48500 * 109.46924 * 239.99732 * 22 20 18 26 26 C 1.46924 * 120.62896 * 89.99495 * 12 9 8 27 27 H 1.08997 * 109.46999 * 96.22460 * 1 2 3 28 28 H 1.08996 * 109.47167 * 216.22261 * 1 2 3 29 29 H 1.09001 * 109.46879 * 336.22473 * 1 2 3 30 30 H 1.08003 * 119.99677 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.00081 * 179.72462 * 4 3 2 32 32 H 1.07998 * 120.00298 * 180.26199 * 5 4 3 33 33 H 1.09000 * 109.46664 * 263.73348 * 7 6 5 34 34 H 1.09007 * 109.46723 * 23.72878 * 7 6 5 35 35 H 1.08997 * 109.47243 * 143.73325 * 7 6 5 36 36 H 1.09004 * 109.58722 * 353.41574 * 13 12 9 37 37 H 1.08997 * 109.58582 * 113.83762 * 13 12 9 38 38 H 1.09000 * 109.57103 * 185.55288 * 14 13 12 39 39 H 1.09006 * 109.38636 * 65.51164 * 14 13 12 40 40 H 1.09001 * 109.45884 * 301.21988 * 15 14 13 41 41 H 1.08994 * 109.45188 * 181.25468 * 15 14 13 42 42 H 0.96994 * 120.00299 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.58804 * 246.15945 * 26 12 9 44 44 H 1.08998 * 109.58698 * 6.59093 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0058 5 6 4.2718 -0.0001 -0.0008 6 6 3.5805 -1.1972 -0.0003 7 6 4.3340 -2.5024 -0.0002 8 6 2.1982 -1.1972 -0.0004 9 16 1.3172 -2.7231 -0.0004 10 8 0.0316 -2.4441 -0.5376 11 8 2.1960 -3.6939 -0.5521 12 7 1.0799 -3.1523 1.5814 13 6 2.0646 -3.9835 2.2872 14 6 1.3534 -5.1936 2.8900 15 6 0.1912 -4.7164 3.7641 16 6 -0.8116 -3.9431 2.9047 17 1 -1.1745 -4.5854 2.1023 18 6 -1.9713 -3.5013 3.7596 19 1 -2.1951 -2.4500 3.8646 20 6 -2.7465 -4.4394 4.4079 21 7 -2.4742 -5.7196 4.2797 22 14 -4.1845 -3.8918 5.4671 23 1 -4.2784 -2.4099 5.4465 24 1 -5.4419 -4.4755 4.9346 25 1 -3.9759 -4.3548 6.8626 26 6 -0.1221 -2.7141 2.3037 27 1 -0.3633 -0.1114 -1.0216 28 1 -0.3633 -0.8290 0.6072 29 1 -0.3633 0.9405 0.4143 30 1 1.6582 2.1325 -0.0004 31 1 4.1205 2.1323 -0.0103 32 1 5.3517 -0.0001 -0.0011 33 1 4.4181 -2.8733 -1.0216 34 1 5.3306 -2.3465 0.4131 35 1 3.7982 -3.2311 0.6081 36 1 2.8272 -4.3217 1.5857 37 1 2.5296 -3.4024 3.0835 38 1 2.0554 -5.7642 3.4980 39 1 0.9701 -5.8246 2.0881 40 1 0.5723 -4.0659 4.5514 41 1 -0.3032 -5.5779 4.2125 42 1 -3.0197 -6.3795 4.7354 43 1 0.1609 -2.0273 3.1014 44 1 -0.8019 -2.2151 1.6130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194627704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:34 Heat of formation + Delta-G solvation = -51.717076 kcal Electronic energy + Delta-G solvation = -26799.070998 eV Core-core repulsion = 23229.060903 eV Total energy + Delta-G solvation = -3570.010094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.59811 -37.75129 -37.31064 -35.55724 -33.48862 -33.32426 -32.29457 -31.12007 -30.12600 -27.53745 -26.71885 -25.11636 -23.61821 -22.89098 -21.70325 -20.91820 -19.54662 -18.52553 -17.54294 -17.00445 -16.21094 -16.16416 -15.56305 -15.10797 -14.60444 -14.19328 -14.11560 -13.92129 -13.50387 -13.37855 -13.33601 -13.13494 -12.83337 -12.66513 -12.58359 -12.41902 -12.26874 -11.99999 -11.77231 -11.68177 -11.31105 -11.27688 -10.99087 -10.92331 -10.80777 -10.67772 -10.31062 -10.20123 -9.93897 -9.78732 -9.46119 -9.25258 -8.83058 -8.68825 -8.44767 -8.17600 -6.01028 -4.08443 0.59424 0.88187 1.20721 3.19437 3.28989 3.37475 3.40642 3.53069 4.05798 4.40945 4.44954 4.64125 4.70583 4.75251 5.08518 5.19621 5.26244 5.29633 5.34899 5.41761 5.55856 5.69444 5.71053 5.72629 5.75779 5.82151 5.99980 6.11902 6.15280 6.22633 6.26968 6.29929 6.30801 6.37041 6.49530 6.63824 6.65439 6.80554 6.88446 7.02013 7.22273 7.43906 7.71068 7.95607 8.09291 8.38804 8.95015 9.56430 11.04514 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018388 B = 0.004380 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.377233 B = 6390.533982 C = 7102.545745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.029 3.971 3 C -0.156 4.156 4 C -0.061 4.061 5 C -0.157 4.157 6 C 0.023 3.977 7 C -0.142 4.142 8 C -0.684 4.684 9 S 2.684 3.316 10 O -0.953 6.953 11 O -0.964 6.964 12 N -0.990 5.990 13 C 0.121 3.879 14 C -0.132 4.132 15 C -0.110 4.110 16 C 0.042 3.958 17 H 0.033 0.967 18 C -0.515 4.515 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.122 3.878 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.095 0.905 42 H 0.260 0.740 43 H 0.057 0.943 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.444 10.279 -6.678 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 C -0.175 4.175 4 C -0.079 4.079 5 C -0.176 4.176 6 C 0.022 3.978 7 C -0.198 4.198 8 C -0.770 4.770 9 S 2.776 3.224 10 O -0.944 6.944 11 O -0.955 6.955 12 N -0.830 5.830 13 C -0.004 4.004 14 C -0.171 4.171 15 C -0.148 4.148 16 C 0.022 3.978 17 H 0.051 0.949 18 C -0.554 4.554 19 H 0.076 0.924 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.002 4.002 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.121 9.670 -7.362 17.885 hybrid contribution -0.316 1.033 0.945 1.436 sum 12.805 10.703 -6.416 17.880 Atomic orbital electron populations 1.21470 0.89480 1.04147 1.05134 1.19707 0.96367 0.91647 0.89544 1.21152 0.94389 0.97685 1.04232 1.21373 0.94428 0.98073 0.94051 1.21111 0.99957 0.91999 1.04548 1.19642 0.91485 0.96373 0.90308 1.21410 0.99961 0.93419 1.04990 1.30936 1.05626 1.20589 1.19862 1.02139 0.73452 0.73575 0.73221 1.93589 1.38573 1.85386 1.76821 1.93546 1.66906 1.58331 1.76669 1.57624 1.30865 1.63529 1.30938 1.21445 0.90144 0.92542 0.96287 1.21884 0.99077 0.96003 1.00106 1.21591 0.93828 1.02238 0.97147 1.18954 0.92635 0.91173 0.95055 0.94911 1.21117 1.12161 0.93152 1.28923 0.92381 1.24934 0.97405 0.94891 0.96548 1.69883 1.39246 1.00088 1.43366 0.86545 0.82532 0.78834 0.80112 1.19761 1.21029 1.21113 1.21954 0.83191 0.99683 0.95322 0.88815 0.88945 0.91023 0.85327 0.85563 0.85441 0.88862 0.91152 0.89571 0.90222 0.92130 0.92419 0.92190 0.94590 0.88681 0.93004 0.92474 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.33 36.01 0.30 -1.73 16 2 C 0.03 0.40 5.88 -104.62 -0.61 -0.21 16 3 C -0.16 -1.81 9.68 -39.58 -0.38 -2.20 16 4 C -0.06 -0.63 10.05 -39.58 -0.40 -1.03 16 5 C -0.16 -1.75 9.68 -39.58 -0.38 -2.13 16 6 C 0.02 0.31 5.88 -104.62 -0.61 -0.30 16 7 C -0.14 -1.71 8.33 36.01 0.30 -1.41 16 8 C -0.68 -10.31 5.97 -39.58 -0.24 -10.55 16 9 S 2.68 46.51 4.96 -107.50 -0.53 45.97 16 10 O -0.95 -18.52 13.18 -57.17 -0.75 -19.28 16 11 O -0.96 -17.35 13.22 -57.17 -0.76 -18.11 16 12 N -0.99 -17.65 3.30 -113.77 -0.37 -18.03 16 13 C 0.12 1.96 6.02 -3.94 -0.02 1.94 16 14 C -0.13 -2.42 6.06 -26.84 -0.16 -2.58 16 15 C -0.11 -2.45 4.96 -26.69 -0.13 -2.59 16 16 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 17 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.51 -13.54 8.56 -34.44 -0.29 -13.83 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -24.65 11.32 55.43 0.63 -24.03 16 22 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.12 2.45 5.32 -3.71 -0.02 2.43 16 27 H 0.09 1.29 7.85 -51.93 -0.41 0.88 16 28 H 0.09 1.46 3.70 -51.93 -0.19 1.27 16 29 H 0.07 0.80 8.04 -51.93 -0.42 0.39 16 30 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.09 1.13 7.84 -51.93 -0.41 0.72 16 34 H 0.07 0.65 8.04 -51.92 -0.42 0.23 16 35 H 0.09 1.12 3.67 -51.93 -0.19 0.93 16 36 H 0.08 1.15 5.15 -51.93 -0.27 0.88 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.09 2.40 6.05 -51.93 -0.31 2.09 16 42 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.60 5.17 -51.93 -0.27 1.33 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -30.39 343.70 -10.82 -41.21 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.23 Total: 3.14 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: -2.96 Total: -31.78 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.25 Total: -42.05 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.51 Total: -37.38 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 46.51 SS G_CDS: -0.53 Total: 45.97 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.39 -10.82 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194627704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.506 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds