Wall clock time and date at job start Tue Mar 31 2020 14:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 120.00259 * 2 1 4 4 C 1.38232 * 120.00089 * 180.27965 * 3 2 1 5 5 C 1.38238 * 120.00054 * 359.47990 * 4 3 2 6 6 C 1.38234 * 119.99691 * 0.49524 * 5 4 3 7 7 C 1.50703 * 120.00150 * 179.76590 * 6 5 4 8 8 C 1.38238 * 120.00332 * 359.78682 * 6 5 4 9 9 S 1.76195 * 120.00195 * 179.97438 * 8 6 5 10 10 O 1.42099 * 106.40229 * 203.20914 * 9 8 6 11 11 O 1.42101 * 106.40346 * 336.12340 * 9 8 6 12 12 N 1.65604 * 107.22243 * 89.66653 * 9 8 6 13 13 C 1.46925 * 120.62911 * 269.72142 * 12 9 8 14 14 C 1.52752 * 109.00917 * 233.58106 * 13 12 9 15 15 C 1.53043 * 109.38523 * 305.59014 * 14 13 12 16 16 C 1.53043 * 109.53677 * 61.23762 * 15 14 13 17 17 H 1.08997 * 109.50184 * 58.58965 * 16 15 14 18 18 C 1.50701 * 109.49862 * 178.68707 * 16 15 14 19 19 H 1.08001 * 119.99988 * 119.83654 * 18 16 15 20 20 C 1.37875 * 119.99714 * 299.84217 * 18 16 15 21 21 N 1.31513 * 120.00497 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99842 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46890 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46977 * 119.99645 * 22 20 18 25 25 H 1.48500 * 109.46924 * 239.99732 * 22 20 18 26 26 C 1.46924 * 120.62896 * 89.99495 * 12 9 8 27 27 H 1.08997 * 109.46999 * 96.22460 * 1 2 3 28 28 H 1.08996 * 109.47167 * 216.22261 * 1 2 3 29 29 H 1.09001 * 109.46879 * 336.22473 * 1 2 3 30 30 H 1.08003 * 119.99677 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.00081 * 179.72462 * 4 3 2 32 32 H 1.07998 * 120.00298 * 180.26199 * 5 4 3 33 33 H 1.09000 * 109.46664 * 263.73348 * 7 6 5 34 34 H 1.09007 * 109.46723 * 23.72878 * 7 6 5 35 35 H 1.08997 * 109.47243 * 143.73325 * 7 6 5 36 36 H 1.09004 * 109.58722 * 353.41574 * 13 12 9 37 37 H 1.08997 * 109.58582 * 113.83762 * 13 12 9 38 38 H 1.09000 * 109.57103 * 185.55288 * 14 13 12 39 39 H 1.09006 * 109.38636 * 65.51164 * 14 13 12 40 40 H 1.09001 * 109.45884 * 301.21988 * 15 14 13 41 41 H 1.08994 * 109.45188 * 181.25468 * 15 14 13 42 42 H 0.96994 * 120.00299 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.58804 * 246.15945 * 26 12 9 44 44 H 1.08998 * 109.58698 * 6.59093 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0058 5 6 4.2718 -0.0001 -0.0008 6 6 3.5805 -1.1972 -0.0003 7 6 4.3340 -2.5024 -0.0002 8 6 2.1982 -1.1972 -0.0004 9 16 1.3172 -2.7231 -0.0004 10 8 0.0316 -2.4441 -0.5376 11 8 2.1960 -3.6939 -0.5521 12 7 1.0799 -3.1523 1.5814 13 6 2.0646 -3.9835 2.2872 14 6 1.3534 -5.1936 2.8900 15 6 0.1912 -4.7164 3.7641 16 6 -0.8116 -3.9431 2.9047 17 1 -1.1745 -4.5854 2.1023 18 6 -1.9713 -3.5013 3.7596 19 1 -2.1951 -2.4500 3.8646 20 6 -2.7465 -4.4394 4.4079 21 7 -2.4742 -5.7196 4.2797 22 14 -4.1845 -3.8918 5.4671 23 1 -4.2784 -2.4099 5.4465 24 1 -5.4419 -4.4755 4.9346 25 1 -3.9759 -4.3548 6.8626 26 6 -0.1221 -2.7141 2.3037 27 1 -0.3633 -0.1114 -1.0216 28 1 -0.3633 -0.8290 0.6072 29 1 -0.3633 0.9405 0.4143 30 1 1.6582 2.1325 -0.0004 31 1 4.1205 2.1323 -0.0103 32 1 5.3517 -0.0001 -0.0011 33 1 4.4181 -2.8733 -1.0216 34 1 5.3306 -2.3465 0.4131 35 1 3.7982 -3.2311 0.6081 36 1 2.8272 -4.3217 1.5857 37 1 2.5296 -3.4024 3.0835 38 1 2.0554 -5.7642 3.4980 39 1 0.9701 -5.8246 2.0881 40 1 0.5723 -4.0659 4.5514 41 1 -0.3032 -5.5779 4.2125 42 1 -3.0197 -6.3795 4.7354 43 1 0.1609 -2.0273 3.1014 44 1 -0.8019 -2.2151 1.6130 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194627704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:33 Heat of formation + Delta-G solvation = -69.454755 kcal Electronic energy + Delta-G solvation = -26799.840161 eV Core-core repulsion = 23229.060903 eV Total energy + Delta-G solvation = -3570.779258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.51399 -39.34010 -38.68179 -36.96216 -35.20979 -34.45236 -33.22332 -32.71520 -31.89871 -28.54119 -27.64701 -26.99837 -25.18804 -23.84933 -23.37219 -21.85555 -21.19161 -19.84706 -19.03127 -18.27868 -18.03357 -17.35396 -16.62511 -16.42893 -16.26306 -15.36978 -15.22687 -15.17886 -15.08381 -14.88133 -14.63733 -14.30625 -14.18534 -14.09182 -13.77753 -13.64154 -13.37841 -13.27301 -13.14880 -12.90299 -12.80037 -12.68181 -12.62676 -12.48010 -12.18520 -12.08932 -11.79846 -11.79150 -11.60696 -11.36137 -11.03773 -10.74961 -10.41375 -10.29175 -9.76353 -9.59622 -8.05811 -6.20706 -0.65290 -0.15239 0.30843 1.43056 1.45406 1.56259 1.95326 2.45979 2.53383 2.78330 3.21378 3.24884 3.70762 3.73007 3.81378 3.96072 4.18602 4.26964 4.31260 4.33002 4.47422 4.54703 4.56261 4.58148 4.69463 4.74927 4.81110 4.82348 4.86099 4.88432 4.95524 5.07364 5.22792 5.24956 5.27614 5.34224 5.37940 5.41146 5.43830 5.55395 5.66571 5.72987 5.93545 5.99257 6.17775 6.39047 6.90980 7.47410 8.98546 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018388 B = 0.004380 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.377233 B = 6390.533982 C = 7102.545745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.008 3.992 3 C -0.157 4.157 4 C -0.051 4.051 5 C -0.155 4.155 6 C 0.009 3.991 7 C -0.146 4.146 8 C -0.696 4.696 9 S 2.687 3.313 10 O -0.987 6.987 11 O -0.978 6.978 12 N -0.996 5.996 13 C 0.119 3.881 14 C -0.128 4.128 15 C -0.103 4.103 16 C 0.036 3.964 17 H -0.012 1.012 18 C -0.532 4.532 19 H 0.061 0.939 20 C 0.014 3.986 21 N -0.916 5.916 22 Si 0.955 3.045 23 H -0.264 1.264 24 H -0.286 1.286 25 H -0.280 1.280 26 C 0.136 3.864 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.155 0.845 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.060 0.940 42 H 0.260 0.740 43 H 0.070 0.930 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.009 13.195 -6.247 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.006 3.994 3 C -0.176 4.176 4 C -0.069 4.069 5 C -0.173 4.173 6 C 0.007 3.993 7 C -0.202 4.202 8 C -0.786 4.786 9 S 2.784 3.216 10 O -0.977 6.977 11 O -0.969 6.969 12 N -0.834 5.834 13 C -0.005 4.005 14 C -0.167 4.167 15 C -0.141 4.141 16 C 0.016 3.984 17 H 0.006 0.994 18 C -0.570 4.570 19 H 0.079 0.921 20 C -0.185 4.185 21 N -0.556 5.556 22 Si 0.781 3.219 23 H -0.188 1.188 24 H -0.212 1.212 25 H -0.206 1.206 26 C 0.011 3.989 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.173 0.827 31 H 0.185 0.815 32 H 0.179 0.821 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.669 12.540 -6.929 21.232 hybrid contribution -1.042 0.193 0.742 1.294 sum 14.627 12.733 -6.187 20.356 Atomic orbital electron populations 1.21454 0.90247 1.04454 1.04421 1.19835 0.96204 0.92454 0.90906 1.21512 0.95373 0.97576 1.03135 1.21891 0.94000 0.99557 0.91470 1.21545 1.01693 0.91191 1.02879 1.19902 0.90767 0.97926 0.90665 1.21463 1.01435 0.92689 1.04635 1.30398 1.06424 1.18846 1.22943 1.01687 0.72987 0.74303 0.72646 1.93548 1.40699 1.86054 1.77409 1.93522 1.66803 1.59785 1.76771 1.57561 1.30541 1.64409 1.30906 1.21606 0.89862 0.91651 0.97408 1.21827 0.98397 0.97181 0.99304 1.21391 0.94611 1.00682 0.97441 1.18921 0.93199 0.92403 0.93917 0.99390 1.21510 1.13127 0.93348 1.29059 0.92119 1.25720 0.99946 0.94946 0.97868 1.70037 1.40239 1.01057 1.44265 0.85558 0.79152 0.78799 0.78434 1.18767 1.21175 1.20570 1.21598 0.83933 0.97767 0.95584 0.89605 0.91368 0.88514 0.82722 0.81541 0.82128 0.89479 0.87899 0.90930 0.88170 0.89567 0.89507 0.94223 0.94051 0.92101 0.93114 0.91138 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.33 71.24 0.59 -3.55 16 2 C 0.01 0.20 5.88 -19.86 -0.12 0.09 16 3 C -0.16 -3.09 9.68 22.27 0.22 -2.87 16 4 C -0.05 -0.81 10.05 22.27 0.22 -0.58 16 5 C -0.15 -2.74 9.68 22.27 0.22 -2.52 16 6 C 0.01 0.22 5.88 -19.86 -0.12 0.10 16 7 C -0.15 -3.18 8.33 71.24 0.59 -2.59 16 8 C -0.70 -20.22 5.97 22.27 0.13 -20.09 16 9 S 2.69 95.15 4.96 -56.49 -0.28 94.87 16 10 O -0.99 -40.41 13.18 -128.00 -1.69 -42.10 16 11 O -0.98 -35.77 13.22 -128.00 -1.69 -37.46 16 12 N -1.00 -36.00 3.30 -513.86 -1.69 -37.70 16 13 C 0.12 3.77 6.02 86.22 0.52 4.29 16 14 C -0.13 -4.75 6.06 30.53 0.19 -4.57 16 15 C -0.10 -4.74 4.96 30.62 0.15 -4.59 16 16 C 0.04 1.80 2.25 -11.46 -0.03 1.77 16 17 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 18 C -0.53 -28.86 8.56 25.60 0.22 -28.64 16 19 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 20 C 0.01 0.77 5.30 84.65 0.45 1.22 16 21 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 22 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 26 C 0.14 5.60 5.32 86.36 0.46 6.06 16 27 H 0.09 2.43 7.85 -2.39 -0.02 2.41 16 28 H 0.07 2.23 3.70 -2.39 -0.01 2.22 16 29 H 0.10 2.06 8.04 -2.39 -0.02 2.04 16 30 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 31 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.09 1.98 7.84 -2.39 -0.02 1.97 16 34 H 0.10 1.50 8.04 -2.38 -0.02 1.48 16 35 H 0.07 1.77 3.67 -2.39 -0.01 1.76 16 36 H 0.10 2.78 5.15 -2.38 -0.01 2.77 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 3.22 6.05 -2.39 -0.01 3.20 16 42 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.08 3.16 5.17 -2.39 -0.01 3.15 16 Total: -1.00 -69.50 343.70 1.62 -67.87 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.01 Total: 18.46 kcal Atomic # 6 Polarization: -60.19 SS G_CDS: 3.70 Total: -56.49 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -1.45 Total: -90.42 kcal Atomic # 8 Polarization: -76.18 SS G_CDS: -3.38 Total: -79.55 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 95.15 SS G_CDS: -0.28 Total: 94.87 kcal Total: -69.50 1.62 -67.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194627704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.581 kcal (2) G-P(sol) polarization free energy of solvation -69.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds