Wall clock time and date at job start Tue Mar 31 2020 14:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38231 * 119.99811 * 2 1 4 4 C 1.38244 * 119.99662 * 180.20545 * 3 2 1 5 5 C 1.38232 * 119.99837 * 359.85454 * 4 3 2 6 6 C 1.38232 * 120.00409 * 359.95594 * 5 4 3 7 7 C 1.50698 * 120.00495 * 180.02562 * 6 5 4 8 8 C 1.38236 * 119.99908 * 359.97438 * 6 5 4 9 9 S 1.76193 * 120.00194 * 180.02562 * 8 6 5 10 10 O 1.42104 * 106.40401 * 170.44397 * 9 8 6 11 11 O 1.42100 * 106.40314 * 37.52415 * 9 8 6 12 12 N 1.65600 * 107.22026 * 283.98445 * 9 8 6 13 13 C 1.46930 * 120.62920 * 272.69429 * 12 9 8 14 14 C 1.53184 * 108.76714 * 126.40219 * 13 12 9 15 15 C 1.53043 * 109.31208 * 54.65555 * 14 13 12 16 16 C 1.53042 * 109.52706 * 298.61048 * 15 14 13 17 17 H 1.09007 * 109.49791 * 301.42621 * 16 15 14 18 18 C 1.50691 * 109.49947 * 181.35685 * 16 15 14 19 19 H 1.08004 * 119.99990 * 275.38255 * 18 16 15 20 20 C 1.37880 * 120.00176 * 95.38602 * 18 16 15 21 21 N 1.31513 * 120.00247 * 186.22087 * 20 18 16 22 22 Si 1.86799 * 119.99830 * 6.21767 * 20 18 16 23 23 H 1.48498 * 109.47178 * 85.93945 * 22 20 18 24 24 H 1.48501 * 109.47264 * 205.94051 * 22 20 18 25 25 H 1.48500 * 109.47100 * 325.93887 * 22 20 18 26 26 C 1.46917 * 120.63104 * 92.71145 * 12 9 8 27 27 H 1.08998 * 109.46863 * 262.52895 * 1 2 3 28 28 H 1.09001 * 109.47022 * 22.52664 * 1 2 3 29 29 H 1.08999 * 109.47025 * 142.53079 * 1 2 3 30 30 H 1.07996 * 120.00801 * 0.03697 * 3 2 1 31 31 H 1.07997 * 119.99521 * 179.82835 * 4 3 2 32 32 H 1.08002 * 119.99839 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47077 * 262.53964 * 7 6 5 34 34 H 1.09005 * 109.46821 * 22.53463 * 7 6 5 35 35 H 1.08997 * 109.47279 * 142.53313 * 7 6 5 36 36 H 1.09003 * 109.58471 * 246.19911 * 13 12 9 37 37 H 1.09001 * 109.58966 * 6.47335 * 13 12 9 38 38 H 1.08997 * 109.51089 * 294.69728 * 14 13 12 39 39 H 1.09000 * 109.48966 * 174.59361 * 14 13 12 40 40 H 1.09009 * 109.45848 * 178.60084 * 15 14 13 41 41 H 1.09001 * 109.46287 * 58.62939 * 15 14 13 42 42 H 0.96994 * 120.00215 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.59251 * 113.80570 * 26 12 9 44 44 H 1.09001 * 109.58994 * 353.37299 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0043 5 6 4.2717 -0.0001 -0.0055 6 6 3.5806 -1.1972 -0.0016 7 6 4.3340 -2.5023 -0.0024 8 6 2.1982 -1.1972 0.0042 9 16 1.3172 -2.7230 0.0099 10 8 -0.0466 -2.3981 0.2414 11 8 2.0563 -3.6100 0.8383 12 7 1.3968 -3.3408 -1.5245 13 6 0.4022 -2.9607 -2.5370 14 6 1.1355 -2.4424 -3.7780 15 6 2.1404 -3.4962 -4.2490 16 6 3.1731 -3.7467 -3.1476 17 1 3.6814 -2.8131 -2.9064 18 6 4.1814 -4.7599 -3.6246 19 1 3.9716 -5.8153 -3.5324 20 6 5.3720 -4.3395 -4.1787 21 7 6.1980 -5.2167 -4.7058 22 14 5.8117 -2.5240 -4.1806 23 1 6.4721 -2.1733 -2.8976 24 1 6.7364 -2.2398 -5.3073 25 1 4.5761 -1.7156 -4.3385 26 6 2.4629 -4.2797 -1.8991 27 1 -0.3633 -0.1336 1.0189 28 1 -0.3633 0.9493 -0.3937 29 1 -0.3633 -0.8156 -0.6252 30 1 1.6583 2.1325 0.0006 31 1 4.1205 2.1324 -0.0071 32 1 5.3517 -0.0001 -0.0093 33 1 4.3966 -2.8851 -1.0210 34 1 5.3391 -2.3418 0.3879 35 1 3.8114 -3.2239 0.6255 36 1 -0.1984 -3.8304 -2.8038 37 1 -0.2443 -2.1787 -2.1387 38 1 1.6633 -1.5213 -3.5308 39 1 0.4143 -2.2473 -4.5716 40 1 2.6460 -3.1402 -5.1467 41 1 1.6151 -4.4248 -4.4723 42 1 7.0353 -4.9209 -5.0959 43 1 2.0306 -5.2569 -2.1140 44 1 3.1780 -4.3660 -1.0810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194627705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:36 Heat of formation + Delta-G solvation = -63.998862 kcal Electronic energy + Delta-G solvation = -27561.147292 eV Core-core repulsion = 23990.604619 eV Total energy + Delta-G solvation = -3570.542673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55167 -39.46537 -38.73442 -37.04292 -35.10220 -34.47038 -33.24210 -33.14060 -32.18000 -28.53973 -27.63583 -27.07113 -25.31677 -23.90208 -23.17802 -21.89204 -21.08150 -20.01251 -19.26934 -18.61781 -18.18178 -17.33676 -16.58317 -16.50552 -16.31732 -15.53940 -15.41537 -15.26369 -15.11797 -14.78285 -14.65333 -14.49006 -14.36849 -14.13270 -13.89203 -13.80839 -13.51623 -13.29907 -13.26132 -12.95444 -12.91949 -12.86488 -12.67181 -12.38475 -12.20137 -11.87977 -11.82759 -11.77740 -11.46228 -11.30652 -11.27133 -10.92094 -10.63188 -10.30018 -9.84064 -9.61544 -8.27501 -6.29424 -0.65946 -0.17300 0.28272 1.31254 1.34062 1.42940 1.89310 2.33823 2.45907 2.70835 3.08362 3.23157 3.66893 3.72734 3.78682 3.93212 4.12864 4.21853 4.27626 4.29091 4.40584 4.44919 4.50644 4.54952 4.63940 4.70918 4.75682 4.81390 4.85465 4.86060 4.91760 5.04191 5.11719 5.18660 5.20000 5.25904 5.32535 5.36476 5.40366 5.46230 5.58479 5.61109 5.70717 5.81777 5.91412 6.34671 6.78383 7.35674 8.89159 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.006585 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.310162 B = 4251.168993 C = 5009.053977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.012 3.988 3 C -0.155 4.155 4 C -0.052 4.052 5 C -0.170 4.170 6 C 0.014 3.986 7 C -0.201 4.201 8 C -0.698 4.698 9 S 2.693 3.307 10 O -0.962 6.962 11 O -0.984 6.984 12 N -0.994 5.994 13 C 0.118 3.882 14 C -0.131 4.131 15 C -0.109 4.109 16 C 0.004 3.996 17 H 0.033 0.967 18 C -0.509 4.509 19 H 0.040 0.960 20 C 0.021 3.979 21 N -0.946 5.946 22 Si 0.921 3.079 23 H -0.262 1.262 24 H -0.293 1.293 25 H -0.246 1.246 26 C 0.131 3.869 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.140 0.860 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.038 0.962 41 H 0.056 0.944 42 H 0.264 0.736 43 H 0.067 0.933 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.955 15.585 8.045 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 C -0.173 4.173 4 C -0.070 4.070 5 C -0.189 4.189 6 C 0.012 3.988 7 C -0.257 4.257 8 C -0.788 4.788 9 S 2.788 3.212 10 O -0.952 6.952 11 O -0.975 6.975 12 N -0.833 5.833 13 C -0.006 4.006 14 C -0.170 4.170 15 C -0.147 4.147 16 C -0.016 4.016 17 H 0.051 0.949 18 C -0.548 4.548 19 H 0.058 0.942 20 C -0.176 4.176 21 N -0.586 5.586 22 Si 0.745 3.255 23 H -0.186 1.186 24 H -0.219 1.219 25 H -0.170 1.170 26 C 0.007 3.993 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.181 0.819 31 H 0.181 0.819 32 H 0.158 0.842 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.247 15.142 8.683 20.764 hybrid contribution 1.611 0.608 -0.630 1.834 sum -9.636 15.750 8.052 20.143 Atomic orbital electron populations 1.21594 0.88459 1.05334 1.05047 1.19996 0.97194 0.91573 0.90181 1.21554 0.94601 0.98219 1.02963 1.21838 0.94793 0.98671 0.91712 1.21482 1.01174 0.92199 1.04037 1.19691 0.91780 0.96725 0.90591 1.22120 1.02834 0.95847 1.04880 1.30439 1.05615 1.19948 1.22753 1.01647 0.73405 0.73490 0.72624 1.93546 1.32936 1.84486 1.84238 1.93401 1.73013 1.64648 1.66421 1.57657 1.38743 1.57639 1.29244 1.21681 0.89287 1.01542 0.88088 1.21969 0.98804 0.98198 0.98003 1.21652 0.96594 0.98301 0.98151 1.19466 0.93815 0.95492 0.92862 0.94874 1.21175 1.01117 0.93518 1.38940 0.94184 1.25754 0.96332 1.01114 0.94416 1.70039 1.11771 1.36240 1.40515 0.86130 0.79029 0.82001 0.78325 1.18649 1.21933 1.16958 1.21663 0.87733 0.91490 0.98452 0.89613 0.88565 0.88647 0.81926 0.81928 0.84208 0.90240 0.89133 0.86673 0.89497 0.87859 0.92695 0.88637 0.94294 0.92550 0.92685 0.91487 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.36 71.24 0.60 -2.47 16 2 C 0.01 0.30 5.88 -19.86 -0.12 0.19 16 3 C -0.15 -3.10 9.67 22.27 0.22 -2.88 16 4 C -0.05 -1.06 10.05 22.27 0.22 -0.84 16 5 C -0.17 -4.44 9.67 22.27 0.22 -4.22 16 6 C 0.01 0.43 5.87 -19.87 -0.12 0.31 16 7 C -0.20 -6.85 8.22 71.24 0.59 -6.27 16 8 C -0.70 -21.10 5.95 22.27 0.13 -20.96 16 9 S 2.69 86.83 5.12 -56.49 -0.29 86.54 16 10 O -0.96 -29.80 12.49 -128.00 -1.60 -31.40 16 11 O -0.98 -37.05 13.41 -128.00 -1.72 -38.77 16 12 N -0.99 -31.99 3.29 -513.07 -1.69 -33.68 16 13 C 0.12 3.10 6.37 86.36 0.55 3.65 16 14 C -0.13 -3.67 6.08 30.67 0.19 -3.48 16 15 C -0.11 -4.07 5.15 30.62 0.16 -3.91 16 16 C 0.00 0.17 1.52 -11.46 -0.02 0.16 16 17 H 0.03 1.44 4.11 -2.38 -0.01 1.43 16 18 C -0.51 -27.27 8.86 25.60 0.23 -27.04 16 19 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 20 C 0.02 1.19 5.47 84.66 0.46 1.66 16 21 N -0.95 -57.31 13.96 21.45 0.30 -57.01 16 22 Si 0.92 42.45 27.06 68.60 1.86 44.31 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.25 -10.55 6.71 99.48 0.67 -9.88 16 26 C 0.13 5.05 5.00 86.37 0.43 5.48 16 27 H 0.09 1.79 7.96 -2.39 -0.02 1.77 16 28 H 0.10 1.37 8.03 -2.39 -0.02 1.35 16 29 H 0.10 2.15 4.38 -2.39 -0.01 2.14 16 30 H 0.16 2.05 8.05 -2.91 -0.02 2.03 16 31 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 32 H 0.14 3.18 8.05 -2.91 -0.02 3.16 16 33 H 0.08 3.03 4.97 -2.39 -0.01 3.02 16 34 H 0.09 2.71 8.03 -2.38 -0.02 2.69 16 35 H 0.12 4.14 4.40 -2.53 -0.01 4.13 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.10 2.21 6.05 -2.39 -0.01 2.19 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.08 3.21 4.74 -2.39 -0.01 3.20 16 Total: -1.00 -68.10 340.41 1.57 -66.53 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.97 Total: 24.12 kcal Atomic # 6 Polarization: -64.38 SS G_CDS: 3.73 Total: -60.65 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -1.39 Total: -90.69 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -3.32 Total: -70.16 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.86 Total: 44.31 kcal Atomic # 16 Polarization: 86.83 SS G_CDS: -0.29 Total: 86.54 kcal Total: -68.10 1.57 -66.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194627705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.529 kcal (2) G-P(sol) polarization free energy of solvation -68.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds