Wall clock time and date at job start Tue Mar 31 2020 14:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38233 * 119.99994 * 2 1 4 4 C 1.38232 * 119.99559 * 180.29285 * 3 2 1 5 5 C 1.38237 * 120.00141 * 359.70866 * 4 3 2 6 6 C 1.38228 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00231 * 179.97438 * 6 5 4 8 8 C 1.38229 * 120.00180 * 0.02562 * 6 5 4 9 9 S 1.76197 * 120.00314 * 179.97438 * 8 6 5 10 10 O 1.42100 * 106.40687 * 167.32209 * 9 8 6 11 11 O 1.42104 * 106.40206 * 34.40410 * 9 8 6 12 12 N 1.65602 * 107.22099 * 280.86364 * 9 8 6 13 13 C 1.46918 * 120.62980 * 277.05458 * 12 9 8 14 14 C 1.53628 * 108.54212 * 126.36916 * 13 12 9 15 15 C 1.53042 * 109.24347 * 54.85420 * 14 13 12 16 16 C 1.50698 * 109.44769 * 178.50161 * 15 14 13 17 17 H 1.07995 * 120.00128 * 120.06187 * 16 15 14 18 18 C 1.37885 * 120.00033 * 300.05934 * 16 15 14 19 19 N 1.31515 * 119.99445 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00215 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47170 * 59.99741 * 20 18 16 22 22 H 1.48495 * 109.47100 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46888 * 299.99893 * 20 18 16 24 24 C 1.53039 * 109.53721 * 298.51156 * 15 14 13 25 25 C 1.46922 * 120.62899 * 97.33132 * 12 9 8 26 26 H 1.09008 * 109.46791 * 262.17779 * 1 2 3 27 27 H 1.08995 * 109.46816 * 22.17472 * 1 2 3 28 28 H 1.08992 * 109.47047 * 142.17911 * 1 2 3 29 29 H 1.07999 * 120.00130 * 0.02562 * 3 2 1 30 30 H 1.08006 * 120.00311 * 179.72399 * 4 3 2 31 31 H 1.08004 * 119.99951 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47426 * 261.73957 * 7 6 5 33 33 H 1.09011 * 109.46923 * 21.73468 * 7 6 5 34 34 H 1.08997 * 109.47331 * 141.73434 * 7 6 5 35 35 H 1.08998 * 109.58930 * 246.19722 * 13 12 9 36 36 H 1.09000 * 109.59290 * 6.62477 * 13 12 9 37 37 H 1.09000 * 109.63065 * 294.86214 * 14 13 12 38 38 H 1.09004 * 109.43121 * 174.72664 * 14 13 12 39 39 H 1.09000 * 109.45587 * 58.53114 * 15 14 13 40 40 H 0.97004 * 119.99642 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.49823 * 301.41786 * 24 15 14 42 42 H 1.09000 * 109.49988 * 181.31608 * 24 15 14 43 43 H 1.09004 * 109.58888 * 353.38060 * 25 12 9 44 44 H 1.09007 * 109.58693 * 113.65828 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 -0.0061 5 6 4.2717 -0.0002 -0.0062 6 6 3.5805 -1.1972 -0.0006 7 6 4.3339 -2.5024 -0.0012 8 6 2.1982 -1.1972 0.0044 9 16 1.3171 -2.7230 0.0108 10 8 -0.0342 -2.4050 0.3143 11 8 2.0933 -3.6314 0.7802 12 7 1.3245 -3.2999 -1.5414 13 6 0.3414 -2.8210 -2.5226 14 6 1.0947 -2.3192 -3.7639 15 6 2.0095 -3.4312 -4.2826 16 6 2.7232 -2.9565 -5.5220 17 1 3.8022 -2.9152 -5.5414 18 6 1.9987 -2.5748 -6.6313 19 7 0.6847 -2.6246 -6.6075 20 14 2.8835 -1.9870 -8.1679 21 1 3.7698 -3.0665 -8.6723 22 1 1.8856 -1.6387 -9.2110 23 1 3.6985 -0.7891 -7.8421 24 6 3.0381 -3.7905 -3.2079 25 6 2.3104 -4.3048 -1.9619 26 1 -0.3633 -0.1399 1.0182 27 1 -0.3633 0.9516 -0.3879 28 1 -0.3633 -0.8117 -0.6301 29 1 1.6583 2.1324 0.0004 30 1 4.1207 2.1323 -0.0106 31 1 5.3517 -0.0002 -0.0114 32 1 4.3832 -2.8930 -1.0176 33 1 5.3440 -2.3390 0.3746 34 1 3.8196 -3.2191 0.6390 35 1 -0.3244 -3.6377 -2.8013 36 1 -0.2385 -2.0053 -2.0908 37 1 1.6943 -1.4478 -3.5010 38 1 0.3772 -2.0475 -4.5383 39 1 1.4119 -4.3108 -4.5219 40 1 0.1750 -2.3557 -7.3877 41 1 3.6194 -2.9052 -2.9502 42 1 3.7039 -4.5661 -3.5865 43 1 3.0301 -4.4686 -1.1598 44 1 1.8021 -5.2409 -2.1933 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194627738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:57 Heat of formation + Delta-G solvation = -47.376615 kcal Electronic energy + Delta-G solvation = -27154.408005 eV Core-core repulsion = 23584.586127 eV Total energy + Delta-G solvation = -3569.821878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.49256 -37.76797 -37.41604 -35.71312 -33.47557 -33.35489 -32.18708 -30.89262 -30.10521 -27.44716 -26.58235 -25.75187 -22.86892 -22.48614 -22.34323 -20.83568 -19.54563 -18.53163 -17.66246 -17.01173 -16.25177 -16.12414 -15.54541 -15.14191 -14.59919 -14.24325 -14.09955 -13.96862 -13.46257 -13.32897 -13.18309 -13.10136 -12.88889 -12.80770 -12.53380 -12.35121 -12.24598 -12.01610 -11.94292 -11.67811 -11.36958 -11.19414 -10.95468 -10.84831 -10.68382 -10.59615 -10.39696 -10.18218 -10.07706 -9.60284 -9.34057 -9.13269 -8.98870 -8.56145 -8.42386 -8.26205 -6.03009 -4.09215 0.60389 0.94136 1.33959 3.17212 3.28124 3.33442 3.35825 3.55350 3.96159 4.39831 4.46015 4.74501 4.78771 4.83485 5.14755 5.22370 5.26757 5.34712 5.48319 5.50611 5.67349 5.73531 5.80072 5.83287 5.86312 5.88686 6.05044 6.12849 6.20069 6.24048 6.33007 6.37414 6.41230 6.43542 6.47438 6.52717 6.70767 6.89212 6.92401 7.07061 7.17745 7.39941 7.68957 7.93758 8.05793 8.40282 8.94026 9.55645 11.02321 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.004998 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.015684 B = 5601.397388 C = 6008.073068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.026 3.974 3 C -0.156 4.156 4 C -0.058 4.058 5 C -0.156 4.156 6 C 0.035 3.965 7 C -0.192 4.192 8 C -0.681 4.681 9 S 2.689 3.311 10 O -0.960 6.960 11 O -0.965 6.965 12 N -0.987 5.987 13 C 0.119 3.881 14 C -0.123 4.123 15 C 0.052 3.948 16 C -0.513 4.513 17 H 0.053 0.947 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.279 1.279 24 C -0.125 4.125 25 C 0.116 3.884 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.103 0.897 39 H 0.028 0.972 40 H 0.261 0.739 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 4.244 13.273 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.024 3.976 3 C -0.175 4.175 4 C -0.077 4.077 5 C -0.175 4.175 6 C 0.033 3.967 7 C -0.248 4.248 8 C -0.768 4.768 9 S 2.781 3.219 10 O -0.950 6.950 11 O -0.955 6.955 12 N -0.827 5.827 13 C -0.005 4.005 14 C -0.162 4.162 15 C 0.034 3.966 16 C -0.551 4.551 17 H 0.071 0.929 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.164 4.164 25 C -0.009 4.009 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.146 0.854 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.121 0.879 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.252 3.867 13.871 14.575 hybrid contribution 1.066 1.291 -1.352 2.152 sum 3.318 5.159 12.518 13.940 Atomic orbital electron populations 1.21505 0.89618 1.04061 1.04868 1.19672 0.96257 0.91677 0.89948 1.21114 0.94393 0.97594 1.04404 1.21372 0.94442 0.98090 0.93754 1.21129 1.00005 0.92056 1.04269 1.19542 0.91361 0.96311 0.89452 1.22070 1.01642 0.95522 1.05546 1.30619 1.05668 1.19934 1.20614 1.01906 0.73592 0.73412 0.72943 1.93569 1.33801 1.84588 1.83029 1.93374 1.70903 1.62536 1.68714 1.57550 1.43139 1.53161 1.28814 1.21843 0.89779 0.98530 0.90340 1.22086 1.00420 0.99063 0.94636 1.18566 0.92195 0.94553 0.91321 1.21168 0.92859 1.43665 0.97399 0.92858 1.24949 0.94841 0.95630 0.98479 1.69829 1.04907 1.48364 1.29825 0.86712 0.79410 0.79206 0.82967 1.20333 1.21321 1.20450 1.22040 0.99163 0.99975 0.95206 1.21660 0.90455 0.90394 0.98341 0.89476 0.91417 0.88116 0.85455 0.85617 0.85487 0.89240 0.90683 0.85413 0.91320 0.91377 0.94333 0.87907 0.95357 0.92925 0.92918 0.92128 0.90215 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.33 36.01 0.30 -1.66 16 2 C 0.03 0.38 5.88 -104.62 -0.62 -0.23 16 3 C -0.16 -2.01 9.67 -39.59 -0.38 -2.39 16 4 C -0.06 -0.70 10.05 -39.58 -0.40 -1.10 16 5 C -0.16 -2.02 9.67 -39.59 -0.38 -2.41 16 6 C 0.03 0.51 5.87 -104.63 -0.61 -0.10 16 7 C -0.19 -2.57 8.54 36.01 0.31 -2.26 16 8 C -0.68 -10.69 5.96 -39.58 -0.24 -10.93 16 9 S 2.69 44.02 5.11 -107.50 -0.55 43.48 16 10 O -0.96 -16.62 12.84 -57.17 -0.73 -17.36 16 11 O -0.96 -16.48 13.00 -57.17 -0.74 -17.23 16 12 N -0.99 -16.73 3.28 -113.28 -0.37 -17.11 16 13 C 0.12 2.17 6.38 -3.49 -0.02 2.14 16 14 C -0.12 -2.67 5.17 -26.38 -0.14 -2.81 16 15 C 0.05 1.20 2.06 -91.73 -0.19 1.01 16 16 C -0.51 -13.35 8.56 -34.44 -0.29 -13.64 16 17 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 19 N -0.89 -24.22 11.30 55.43 0.63 -23.59 16 20 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.12 -2.36 5.05 -26.61 -0.13 -2.49 16 25 C 0.12 1.91 5.92 -3.71 -0.02 1.89 16 26 H 0.09 1.13 7.89 -51.92 -0.41 0.72 16 27 H 0.07 0.76 8.03 -51.93 -0.42 0.35 16 28 H 0.10 1.50 3.99 -51.93 -0.21 1.30 16 29 H 0.13 1.30 8.05 -52.49 -0.42 0.88 16 30 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.13 1.33 8.05 -52.48 -0.42 0.91 16 32 H 0.09 1.21 5.56 -51.93 -0.29 0.92 16 33 H 0.07 0.82 8.02 -51.92 -0.42 0.40 16 34 H 0.13 1.84 4.55 -52.14 -0.24 1.60 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.13 5.67 -51.93 -0.29 0.83 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.05 0.99 7.09 -51.93 -0.37 0.63 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.16 5.35 -51.93 -0.28 0.88 16 44 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -29.44 341.93 -10.71 -40.14 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.15 Total: 4.29 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: -2.91 Total: -33.43 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.25 Total: -40.70 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.48 Total: -34.58 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 44.02 SS G_CDS: -0.55 Total: 43.48 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.44 -10.71 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194627738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.233 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds