Wall clock time and date at job start Tue Mar 31 2020 14:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38233 * 119.99994 * 2 1 4 4 C 1.38232 * 119.99559 * 180.29285 * 3 2 1 5 5 C 1.38237 * 120.00141 * 359.70866 * 4 3 2 6 6 C 1.38228 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00231 * 179.97438 * 6 5 4 8 8 C 1.38229 * 120.00180 * 0.02562 * 6 5 4 9 9 S 1.76197 * 120.00314 * 179.97438 * 8 6 5 10 10 O 1.42100 * 106.40687 * 167.32209 * 9 8 6 11 11 O 1.42104 * 106.40206 * 34.40410 * 9 8 6 12 12 N 1.65602 * 107.22099 * 280.86364 * 9 8 6 13 13 C 1.46918 * 120.62980 * 277.05458 * 12 9 8 14 14 C 1.53628 * 108.54212 * 126.36916 * 13 12 9 15 15 C 1.53042 * 109.24347 * 54.85420 * 14 13 12 16 16 C 1.50698 * 109.44769 * 178.50161 * 15 14 13 17 17 H 1.07995 * 120.00128 * 120.06187 * 16 15 14 18 18 C 1.37885 * 120.00033 * 300.05934 * 16 15 14 19 19 N 1.31515 * 119.99445 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00215 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47170 * 59.99741 * 20 18 16 22 22 H 1.48495 * 109.47100 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46888 * 299.99893 * 20 18 16 24 24 C 1.53039 * 109.53721 * 298.51156 * 15 14 13 25 25 C 1.46922 * 120.62899 * 97.33132 * 12 9 8 26 26 H 1.09008 * 109.46791 * 262.17779 * 1 2 3 27 27 H 1.08995 * 109.46816 * 22.17472 * 1 2 3 28 28 H 1.08992 * 109.47047 * 142.17911 * 1 2 3 29 29 H 1.07999 * 120.00130 * 0.02562 * 3 2 1 30 30 H 1.08006 * 120.00311 * 179.72399 * 4 3 2 31 31 H 1.08004 * 119.99951 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47426 * 261.73957 * 7 6 5 33 33 H 1.09011 * 109.46923 * 21.73468 * 7 6 5 34 34 H 1.08997 * 109.47331 * 141.73434 * 7 6 5 35 35 H 1.08998 * 109.58930 * 246.19722 * 13 12 9 36 36 H 1.09000 * 109.59290 * 6.62477 * 13 12 9 37 37 H 1.09000 * 109.63065 * 294.86214 * 14 13 12 38 38 H 1.09004 * 109.43121 * 174.72664 * 14 13 12 39 39 H 1.09000 * 109.45587 * 58.53114 * 15 14 13 40 40 H 0.97004 * 119.99642 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.49823 * 301.41786 * 24 15 14 42 42 H 1.09000 * 109.49988 * 181.31608 * 24 15 14 43 43 H 1.09004 * 109.58888 * 353.38060 * 25 12 9 44 44 H 1.09007 * 109.58693 * 113.65828 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 -0.0061 5 6 4.2717 -0.0002 -0.0062 6 6 3.5805 -1.1972 -0.0006 7 6 4.3339 -2.5024 -0.0012 8 6 2.1982 -1.1972 0.0044 9 16 1.3171 -2.7230 0.0108 10 8 -0.0342 -2.4050 0.3143 11 8 2.0933 -3.6314 0.7802 12 7 1.3245 -3.2999 -1.5414 13 6 0.3414 -2.8210 -2.5226 14 6 1.0947 -2.3192 -3.7639 15 6 2.0095 -3.4312 -4.2826 16 6 2.7232 -2.9565 -5.5220 17 1 3.8022 -2.9152 -5.5414 18 6 1.9987 -2.5748 -6.6313 19 7 0.6847 -2.6246 -6.6075 20 14 2.8835 -1.9870 -8.1679 21 1 3.7698 -3.0665 -8.6723 22 1 1.8856 -1.6387 -9.2110 23 1 3.6985 -0.7891 -7.8421 24 6 3.0381 -3.7905 -3.2079 25 6 2.3104 -4.3048 -1.9619 26 1 -0.3633 -0.1399 1.0182 27 1 -0.3633 0.9516 -0.3879 28 1 -0.3633 -0.8117 -0.6301 29 1 1.6583 2.1324 0.0004 30 1 4.1207 2.1323 -0.0106 31 1 5.3517 -0.0002 -0.0114 32 1 4.3832 -2.8930 -1.0176 33 1 5.3440 -2.3390 0.3746 34 1 3.8196 -3.2191 0.6390 35 1 -0.3244 -3.6377 -2.8013 36 1 -0.2385 -2.0053 -2.0908 37 1 1.6943 -1.4478 -3.5010 38 1 0.3772 -2.0475 -4.5383 39 1 1.4119 -4.3108 -4.5219 40 1 0.1750 -2.3557 -7.3877 41 1 3.6194 -2.9052 -2.9502 42 1 3.7039 -4.5661 -3.5865 43 1 3.0301 -4.4686 -1.1598 44 1 1.8021 -5.2409 -2.1933 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194627738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:56 Heat of formation + Delta-G solvation = -63.443878 kcal Electronic energy + Delta-G solvation = -27155.104733 eV Core-core repulsion = 23584.586127 eV Total energy + Delta-G solvation = -3570.518607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.49474 -39.30626 -38.71445 -37.02439 -35.27667 -34.41637 -33.17716 -32.62125 -31.68423 -28.50745 -27.60309 -27.55451 -24.18809 -23.95089 -23.82176 -21.85592 -21.09319 -19.89487 -19.03169 -18.32849 -18.06093 -17.32215 -16.53113 -16.50523 -16.35886 -15.46529 -15.31984 -15.14251 -14.90098 -14.79353 -14.63275 -14.43573 -14.23456 -14.03684 -13.77733 -13.61572 -13.43923 -13.32431 -13.24720 -12.99231 -12.78817 -12.64702 -12.54526 -12.33936 -12.17261 -12.05390 -11.88750 -11.72863 -11.39130 -11.28397 -10.96730 -10.78161 -10.38390 -10.23433 -9.81587 -9.56768 -8.04153 -6.16987 -0.63476 -0.12892 0.33260 1.42822 1.43618 1.50485 1.91248 2.45434 2.48552 2.75172 3.22313 3.25197 3.73495 3.74909 3.77868 3.96599 4.25558 4.31070 4.33359 4.41296 4.49170 4.52455 4.57952 4.64227 4.69740 4.73185 4.78330 4.82661 4.89139 4.89382 4.95505 5.13359 5.24763 5.27228 5.34698 5.35571 5.39305 5.44041 5.45825 5.60300 5.66654 5.73987 5.95526 6.06370 6.20612 6.43993 6.94175 7.50463 8.98987 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.004998 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.015684 B = 5601.397388 C = 6008.073068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.006 3.994 3 C -0.162 4.162 4 C -0.056 4.056 5 C -0.163 4.163 6 C 0.015 3.985 7 C -0.193 4.193 8 C -0.699 4.699 9 S 2.697 3.303 10 O -0.973 6.973 11 O -0.974 6.974 12 N -0.989 5.989 13 C 0.127 3.873 14 C -0.111 4.111 15 C 0.047 3.953 16 C -0.530 4.530 17 H 0.050 0.950 18 C 0.016 3.984 19 N -0.913 5.913 20 Si 0.945 3.055 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.116 4.116 25 C 0.117 3.883 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.001 0.999 40 H 0.260 0.740 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 5.624 14.065 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.005 3.995 3 C -0.180 4.180 4 C -0.074 4.074 5 C -0.181 4.181 6 C 0.013 3.987 7 C -0.249 4.249 8 C -0.789 4.789 9 S 2.793 3.207 10 O -0.964 6.964 11 O -0.964 6.964 12 N -0.828 5.828 13 C 0.003 3.997 14 C -0.150 4.150 15 C 0.029 3.971 16 C -0.569 4.569 17 H 0.068 0.932 18 C -0.183 4.183 19 N -0.553 5.553 20 Si 0.771 3.229 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.154 4.154 25 C -0.008 4.008 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.171 0.829 30 H 0.179 0.821 31 H 0.170 0.830 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.019 0.981 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.721 5.213 14.669 16.007 hybrid contribution 0.648 0.923 -1.572 1.935 sum 4.369 6.137 13.098 15.110 Atomic orbital electron populations 1.21521 0.89444 1.04601 1.04780 1.19923 0.96742 0.92221 0.90659 1.21503 0.95150 0.97910 1.03470 1.21847 0.94360 0.99313 0.91831 1.21524 1.01457 0.91729 1.03420 1.19821 0.91198 0.97582 0.90063 1.22070 1.02826 0.94864 1.05125 1.30434 1.06301 1.19421 1.22702 1.01520 0.73281 0.73584 0.72348 1.93555 1.34863 1.84855 1.83106 1.93371 1.70961 1.63408 1.68705 1.57529 1.43000 1.53521 1.28723 1.21638 0.89703 0.99009 0.89387 1.21829 0.99564 0.98323 0.95329 1.18556 0.92951 0.93698 0.91943 1.21558 0.92953 1.43533 0.98810 0.93159 1.25637 0.95500 0.95991 1.01137 1.69964 1.05940 1.49077 1.30330 0.85819 0.78398 0.78795 0.79839 1.19861 1.21193 1.20065 1.21890 0.98273 1.00289 0.94994 1.21700 0.90741 0.90405 0.97933 0.89284 0.89241 0.89815 0.82861 0.82099 0.82973 0.89635 0.88235 0.86544 0.91377 0.89826 0.95252 0.90856 0.98070 0.93107 0.92884 0.91457 0.87985 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.33 71.24 0.59 -3.27 16 2 C 0.01 0.17 5.88 -19.86 -0.12 0.06 16 3 C -0.16 -3.71 9.67 22.27 0.22 -3.50 16 4 C -0.06 -1.15 10.05 22.27 0.22 -0.92 16 5 C -0.16 -3.75 9.67 22.27 0.22 -3.54 16 6 C 0.01 0.41 5.87 -19.87 -0.12 0.30 16 7 C -0.19 -4.84 8.54 71.24 0.61 -4.23 16 8 C -0.70 -21.24 5.96 22.27 0.13 -21.11 16 9 S 2.70 87.13 5.11 -56.49 -0.29 86.84 16 10 O -0.97 -33.59 12.84 -128.00 -1.64 -35.23 16 11 O -0.97 -32.63 13.00 -128.00 -1.66 -34.30 16 12 N -0.99 -33.31 3.28 -512.29 -1.68 -34.99 16 13 C 0.13 4.69 6.38 86.51 0.55 5.24 16 14 C -0.11 -4.94 5.17 30.82 0.16 -4.78 16 15 C 0.05 2.21 2.06 -11.51 -0.02 2.19 16 16 C -0.53 -27.95 8.56 25.60 0.22 -27.73 16 17 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 18 C 0.02 0.86 5.30 84.66 0.45 1.31 16 19 N -0.91 -50.74 11.30 21.45 0.24 -50.50 16 20 Si 0.94 42.51 29.54 68.60 2.03 44.54 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 C -0.12 -4.34 5.05 30.67 0.15 -4.18 16 25 C 0.12 3.77 5.92 86.36 0.51 4.28 16 26 H 0.09 2.25 7.89 -2.38 -0.02 2.23 16 27 H 0.09 1.87 8.03 -2.39 -0.02 1.85 16 28 H 0.08 2.48 3.99 -2.39 -0.01 2.47 16 29 H 0.15 2.60 8.05 -2.91 -0.02 2.58 16 30 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.15 2.63 8.05 -2.91 -0.02 2.60 16 32 H 0.09 2.18 5.56 -2.39 -0.01 2.17 16 33 H 0.10 1.93 8.02 -2.38 -0.02 1.91 16 34 H 0.12 3.21 4.55 -5.66 -0.03 3.19 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.08 2.80 5.67 -2.39 -0.01 2.79 16 37 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 3.71 6.03 -2.39 -0.01 3.69 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 41 H 0.05 1.97 7.09 -2.39 -0.02 1.96 16 42 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.10 2.85 5.35 -2.38 -0.01 2.84 16 44 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -63.50 341.93 1.76 -61.74 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 1.00 Total: 21.80 kcal Atomic # 6 Polarization: -63.69 SS G_CDS: 3.78 Total: -59.91 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -1.44 Total: -85.49 kcal Atomic # 8 Polarization: -66.22 SS G_CDS: -3.31 Total: -69.53 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 87.13 SS G_CDS: -0.29 Total: 86.84 kcal Total: -63.50 1.76 -61.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194627738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.705 kcal (2) G-P(sol) polarization free energy of solvation -63.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds