Wall clock time and date at job start Tue Mar 31 2020 14:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38232 * 120.00159 * 2 1 4 4 C 1.38231 * 119.99910 * 180.24838 * 3 2 1 5 5 C 1.38229 * 120.00237 * 359.79770 * 4 3 2 6 6 C 1.38234 * 119.99997 * 359.95146 * 5 4 3 7 7 C 1.50701 * 120.00419 * 180.02562 * 6 5 4 8 8 C 1.38238 * 119.99608 * 179.76833 * 2 1 3 9 9 S 1.76199 * 120.00148 * 0.02562 * 8 2 1 10 10 O 1.42099 * 106.40161 * 149.29337 * 9 8 2 11 11 O 1.42102 * 106.40246 * 16.36814 * 9 8 2 12 12 N 1.65604 * 107.21428 * 262.83211 * 9 8 2 13 13 C 1.46497 * 120.00212 * 65.11504 * 12 9 8 14 14 H 1.09000 * 109.41087 * 24.45973 * 13 12 9 15 15 C 1.52955 * 109.41463 * 144.32360 * 13 12 9 16 16 C 1.53227 * 109.40627 * 183.63253 * 15 13 12 17 17 C 1.51272 * 108.69486 * 305.27836 * 16 15 13 18 18 C 1.37877 * 120.84325 * 231.41977 * 17 16 15 19 19 N 1.31509 * 120.00805 * 359.97438 * 18 17 16 20 20 Si 1.86811 * 119.99614 * 179.97438 * 18 17 16 21 21 H 1.48495 * 109.46807 * 89.99597 * 20 18 17 22 22 H 1.48498 * 109.46901 * 209.99893 * 20 18 17 23 23 H 1.48505 * 109.46851 * 329.99643 * 20 18 17 24 24 C 1.51661 * 118.05275 * 51.26329 * 17 16 15 25 25 C 1.52957 * 109.35253 * 264.63934 * 13 12 9 26 26 H 1.09000 * 109.47072 * 254.07932 * 1 2 3 27 27 H 1.09007 * 109.47398 * 14.07514 * 1 2 3 28 28 H 1.08993 * 109.47424 * 134.07935 * 1 2 3 29 29 H 1.08002 * 119.99973 * 0.02562 * 3 2 1 30 30 H 1.07999 * 119.99861 * 179.76669 * 4 3 2 31 31 H 1.07997 * 120.00451 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47087 * 270.02273 * 7 6 5 33 33 H 1.09001 * 109.46985 * 30.02224 * 7 6 5 34 34 H 1.08997 * 109.47133 * 150.01932 * 7 6 5 35 35 H 0.97004 * 119.99884 * 245.11422 * 12 9 8 36 36 H 1.08999 * 109.48170 * 63.65198 * 15 13 12 37 37 H 1.09000 * 109.49407 * 303.61948 * 15 13 12 38 38 H 1.09003 * 109.62305 * 65.08600 * 16 15 13 39 39 H 1.08996 * 109.62970 * 185.46442 * 16 15 13 40 40 H 0.97001 * 120.00693 * 180.02562 * 19 18 17 41 41 H 1.08993 * 109.55775 * 189.02726 * 24 17 16 42 42 H 1.08995 * 109.75090 * 68.60839 * 24 17 16 43 43 H 1.09001 * 109.48510 * 296.30878 * 25 13 12 44 44 H 1.09001 * 109.48565 * 56.33875 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0052 5 6 4.2717 0.0000 -0.0062 6 6 3.5805 -1.1972 -0.0009 7 6 4.3339 -2.5023 -0.0014 8 6 2.1981 -1.1972 0.0048 9 16 1.3171 -2.7231 0.0103 10 8 2.1317 -3.6593 -0.6819 11 8 -0.0161 -2.4181 -0.3755 12 7 1.2423 -3.2402 1.5818 13 6 0.4923 -2.4651 2.5731 14 1 -0.2716 -1.8739 2.0682 15 6 -0.1757 -3.4189 3.5649 16 6 -1.0332 -2.6138 4.5468 17 6 -0.1664 -1.5558 5.1929 18 6 -0.1220 -1.4189 6.5642 19 7 -0.8394 -2.2134 7.3280 20 14 0.9574 -0.1046 7.3371 21 1 0.1786 1.1510 7.4857 22 1 1.4164 -0.5635 8.6727 23 1 2.1351 0.1433 6.4671 24 6 0.6529 -0.6551 4.2887 25 6 1.4493 -1.5314 3.3161 26 1 -0.3633 -0.2819 0.9882 27 1 -0.3634 0.9969 -0.2499 28 1 -0.3634 -0.7148 -0.7382 29 1 1.6582 2.1324 0.0004 30 1 4.1205 2.1323 -0.0090 31 1 5.3516 -0.0001 -0.0106 32 1 4.5117 -2.8189 -1.0292 33 1 5.2883 -2.3711 0.5086 34 1 3.7468 -3.2610 0.5161 35 1 1.6952 -4.0564 1.8458 36 1 0.5898 -3.9662 4.1149 37 1 -0.8074 -4.1229 3.0232 38 1 -1.8540 -2.1373 4.0106 39 1 -1.4332 -3.2776 5.3132 40 1 -0.8084 -2.1169 8.2927 41 1 1.3391 -0.0600 4.8912 42 1 -0.0092 0.0051 3.7286 43 1 2.1764 -2.1233 3.8720 44 1 1.9695 -0.8975 2.5979 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194653222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:07 Heat of formation + Delta-G solvation = -60.360138 kcal Electronic energy + Delta-G solvation = -26988.922643 eV Core-core repulsion = 23418.537757 eV Total energy + Delta-G solvation = -3570.384886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.58751 -37.67967 -37.17799 -35.74110 -33.73042 -33.44071 -32.25777 -31.29000 -29.67337 -27.50692 -26.94791 -26.60094 -22.90269 -22.11963 -21.52932 -20.89406 -19.73342 -19.27110 -17.71591 -17.06562 -16.36659 -15.92916 -15.59629 -15.38960 -14.53928 -14.47941 -14.19257 -14.06894 -13.34586 -13.26489 -13.12796 -12.93993 -12.68705 -12.64356 -12.38746 -12.33667 -12.30888 -12.23119 -11.88950 -11.65962 -11.42128 -11.26340 -11.10653 -10.97387 -10.84902 -10.61770 -10.25083 -10.20767 -10.02642 -9.72726 -9.32414 -9.22116 -8.94410 -8.61010 -8.54903 -8.44218 -6.14037 -4.05359 0.57319 0.87133 1.27526 3.17187 3.23405 3.31751 3.32174 3.47925 3.94862 4.33849 4.43497 4.65264 4.75235 4.79934 5.11560 5.14285 5.27459 5.37954 5.38965 5.48538 5.60201 5.73585 5.76668 5.77152 5.89169 5.97105 6.08408 6.11113 6.18721 6.31183 6.35469 6.44401 6.53505 6.56659 6.70465 6.78357 6.86285 6.96944 7.01561 7.10210 7.29510 7.38736 7.60187 7.70146 7.79817 8.33626 8.92040 9.50178 10.95233 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.005144 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.895470 B = 5442.342624 C = 6208.446857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.035 3.965 3 C -0.153 4.153 4 C -0.057 4.057 5 C -0.157 4.157 6 C 0.026 3.974 7 C -0.136 4.136 8 C -0.680 4.680 9 S 2.689 3.311 10 O -0.970 6.970 11 O -0.957 6.957 12 N -1.111 6.111 13 C 0.158 3.842 14 H 0.083 0.917 15 C -0.110 4.110 16 C 0.010 3.990 17 C -0.487 4.487 18 C 0.077 3.923 19 N -0.889 5.889 20 Si 0.885 3.115 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.265 1.265 24 C -0.019 4.019 25 C -0.124 4.124 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.413 0.587 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.007 0.993 39 H 0.061 0.939 40 H 0.264 0.736 41 H 0.036 0.964 42 H 0.018 0.982 43 H 0.057 0.943 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.471 3.237 -13.756 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.033 3.967 3 C -0.172 4.172 4 C -0.076 4.076 5 C -0.176 4.176 6 C 0.025 3.975 7 C -0.192 4.192 8 C -0.767 4.767 9 S 2.781 3.219 10 O -0.961 6.961 11 O -0.947 6.947 12 N -0.871 5.871 13 C 0.052 3.948 14 H 0.100 0.900 15 C -0.149 4.149 16 C -0.028 4.028 17 C -0.506 4.506 18 C -0.125 4.125 19 N -0.526 5.526 20 Si 0.713 3.287 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.190 1.190 24 C -0.058 4.058 25 C -0.163 4.163 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.247 0.753 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.026 0.974 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.976 2.913 -14.352 16.676 hybrid contribution 1.393 1.158 1.083 2.110 sum 9.368 4.071 -13.269 16.745 Atomic orbital electron populations 1.21884 0.89594 1.04819 1.06349 1.19693 0.96413 0.91540 0.89039 1.21171 0.94351 0.97749 1.03952 1.21376 0.94474 0.98071 0.93634 1.21064 0.99938 0.91995 1.04587 1.19547 0.91412 0.96236 0.90352 1.21235 1.00373 0.93346 1.04279 1.30521 1.05455 1.19822 1.20882 1.01865 0.73901 0.73364 0.72800 1.93566 1.69769 1.60886 1.71837 1.93490 1.35741 1.84162 1.81322 1.55702 1.66934 1.36432 1.28013 1.20983 0.92518 0.92610 0.88640 0.89951 1.21902 0.99390 0.97111 0.96530 1.19388 0.93839 0.95397 0.94208 1.20094 1.24756 1.15584 0.90195 1.24810 0.95430 0.95675 0.96624 1.69822 1.40322 1.37687 1.04780 0.86716 0.81532 0.82206 0.78236 1.20415 1.21646 1.19021 1.19858 0.95431 0.95257 0.95214 1.22089 0.98145 0.97949 0.98153 0.89287 0.91326 0.85629 0.85332 0.85595 0.85511 0.89089 0.90836 0.90446 0.75270 0.92542 0.94182 0.97436 0.92071 0.92552 0.94607 0.96364 0.92388 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 8.57 36.01 0.31 -2.05 16 2 C 0.03 0.49 5.57 -104.62 -0.58 -0.09 16 3 C -0.15 -1.89 9.67 -39.59 -0.38 -2.27 16 4 C -0.06 -0.64 10.05 -39.59 -0.40 -1.04 16 5 C -0.16 -1.83 9.70 -39.59 -0.38 -2.21 16 6 C 0.03 0.34 5.87 -104.62 -0.61 -0.27 16 7 C -0.14 -1.60 8.47 36.01 0.30 -1.30 16 8 C -0.68 -9.90 4.81 -39.58 -0.19 -10.09 16 9 S 2.69 41.16 4.96 -107.50 -0.53 40.62 16 10 O -0.97 -15.66 14.83 -57.17 -0.85 -16.50 16 11 O -0.96 -16.29 13.01 -57.17 -0.74 -17.03 16 12 N -1.11 -16.84 5.42 -4.93 -0.03 -16.86 16 13 C 0.16 2.83 2.69 -67.98 -0.18 2.65 16 14 H 0.08 1.51 5.70 -51.93 -0.30 1.21 16 15 C -0.11 -2.18 5.47 -26.64 -0.15 -2.32 16 16 C 0.01 0.23 5.95 -27.49 -0.16 0.07 16 17 C -0.49 -12.24 5.53 -98.73 -0.55 -12.78 16 18 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 19 N -0.89 -24.81 12.73 55.43 0.71 -24.10 16 20 Si 0.88 20.46 27.55 -169.99 -4.68 15.78 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -5.92 6.11 56.52 0.35 -5.57 16 24 C -0.02 -0.43 5.61 -27.29 -0.15 -0.58 16 25 C -0.12 -2.36 5.54 -26.63 -0.15 -2.51 16 26 H 0.09 1.33 6.35 -51.93 -0.33 1.00 16 27 H 0.07 0.78 7.94 -51.93 -0.41 0.37 16 28 H 0.13 1.84 5.27 -52.20 -0.27 1.57 16 29 H 0.13 1.30 8.00 -52.49 -0.42 0.88 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.08 0.95 5.81 -51.93 -0.30 0.65 16 35 H 0.41 5.41 8.84 -34.47 -0.30 5.10 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.04 0.80 4.64 -51.93 -0.24 0.56 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.65 6.62 -51.93 -0.34 0.30 16 LS Contribution 345.33 15.07 5.20 5.20 Total: -1.00 -29.88 345.33 -10.58 -40.46 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.28 Total: 5.28 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: -3.37 Total: -32.85 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.68 Total: -40.97 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.59 Total: -33.54 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.68 Total: 15.78 kcal Atomic # 16 Polarization: 41.16 SS G_CDS: -0.53 Total: 40.62 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.88 -10.58 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194653222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.897 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds