Wall clock time and date at job start Tue Mar 31 2020 14:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38235 * 119.99834 * 2 1 4 4 C 1.38239 * 119.99974 * 180.25727 * 3 2 1 5 5 C 1.38241 * 119.99929 * 359.50759 * 4 3 2 6 6 C 1.38239 * 119.99703 * 0.47476 * 5 4 3 7 7 C 1.50704 * 119.99624 * 179.78423 * 6 5 4 8 8 C 1.38233 * 120.00253 * 359.75865 * 6 5 4 9 9 S 1.76193 * 120.00029 * 180.02562 * 8 6 5 10 10 O 1.42100 * 106.40426 * 197.93702 * 9 8 6 11 11 O 1.42097 * 106.40402 * 330.86088 * 9 8 6 12 12 N 1.65606 * 107.21661 * 84.40154 * 9 8 6 13 13 C 1.46501 * 120.00445 * 61.01626 * 12 9 8 14 14 H 1.09003 * 109.41058 * 25.36266 * 13 12 9 15 15 C 1.52958 * 109.41445 * 145.22461 * 13 12 9 16 16 C 1.53229 * 109.40223 * 183.70823 * 15 13 12 17 17 C 1.51270 * 108.53497 * 305.37188 * 16 15 13 18 18 C 1.37879 * 120.84941 * 231.36890 * 17 16 15 19 19 N 1.31508 * 120.00007 * 0.02562 * 18 17 16 20 20 Si 1.86800 * 120.00033 * 179.97438 * 18 17 16 21 21 H 1.48497 * 109.47347 * 90.00325 * 20 18 17 22 22 H 1.48499 * 109.47169 * 210.00551 * 20 18 17 23 23 H 1.48506 * 109.47133 * 330.00401 * 20 18 17 24 24 C 1.51271 * 118.30265 * 51.34777 * 17 16 15 25 25 C 1.52958 * 109.41221 * 265.58103 * 13 12 9 26 26 H 1.09003 * 109.47220 * 97.05511 * 1 2 3 27 27 H 1.09001 * 109.46934 * 217.05257 * 1 2 3 28 28 H 1.08996 * 109.47201 * 337.05362 * 1 2 3 29 29 H 1.07995 * 119.99882 * 359.97438 * 3 2 1 30 30 H 1.07993 * 120.00049 * 179.72674 * 4 3 2 31 31 H 1.07994 * 119.99963 * 180.25889 * 5 4 3 32 32 H 1.08994 * 109.46835 * 263.89398 * 7 6 5 33 33 H 1.08997 * 109.46742 * 23.89610 * 7 6 5 34 34 H 1.09003 * 109.46556 * 143.89527 * 7 6 5 35 35 H 0.97008 * 119.99959 * 241.01920 * 12 9 8 36 36 H 1.08997 * 109.47954 * 303.68249 * 15 13 12 37 37 H 1.08994 * 109.48096 * 63.72978 * 15 13 12 38 38 H 1.09000 * 109.62812 * 65.08542 * 16 15 13 39 39 H 1.08997 * 109.62550 * 185.65915 * 16 15 13 40 40 H 0.97004 * 119.99945 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.62396 * 68.36946 * 24 17 16 42 42 H 1.08998 * 109.62748 * 188.93215 * 24 17 16 43 43 H 1.08996 * 109.48055 * 296.27127 * 25 13 12 44 44 H 1.09003 * 109.48754 * 56.31300 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 0.0001 -0.0005 6 6 3.5805 -1.1971 -0.0001 7 6 4.3341 -2.5022 0.0003 8 6 2.1982 -1.1972 0.0004 9 16 1.3173 -2.7231 0.0016 10 8 -0.0067 -2.4224 -0.4179 11 8 2.1475 -3.6663 -0.6620 12 7 1.2064 -3.2239 1.5762 13 6 0.5099 -2.3934 2.5618 14 1 -0.2231 -1.7665 2.0540 15 6 -0.2035 -3.2936 3.5719 16 6 -1.0072 -2.4271 4.5472 17 6 -0.0748 -1.4105 5.1679 18 6 -0.0096 -1.2536 6.5361 19 7 -0.7637 -1.9933 7.3195 20 14 1.1509 0.0086 7.2773 21 1 0.4474 1.3095 7.4112 22 1 1.5954 -0.4539 8.6166 23 1 2.3327 0.1738 6.3933 24 6 0.7847 -0.5706 4.2490 25 6 1.5233 -1.5044 3.2845 26 1 -0.3634 -0.1262 -1.0199 27 1 -0.3633 -0.8202 0.6192 28 1 -0.3633 0.9463 0.4006 29 1 1.6581 2.1324 -0.0004 30 1 4.1204 2.1325 -0.0098 31 1 5.3517 0.0001 -0.0004 32 1 4.4211 -2.8718 -1.0213 33 1 5.3294 -2.3468 0.4166 34 1 3.7967 -3.2318 0.6062 35 1 1.6027 -4.0672 1.8460 36 1 -0.8778 -3.9684 3.0446 37 1 0.5340 -3.8750 4.1250 38 1 -1.8037 -1.9129 4.0093 39 1 -1.4355 -3.0557 5.3279 40 1 -0.7175 -1.8833 8.2821 41 1 0.1540 0.1155 3.6835 42 1 1.5076 -0.0064 4.8382 43 1 2.2199 -2.1282 3.8444 44 1 2.0730 -0.9111 2.5536 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194653223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:11 Heat of formation + Delta-G solvation = -62.834360 kcal Electronic energy + Delta-G solvation = -27041.746682 eV Core-core repulsion = 23471.254506 eV Total energy + Delta-G solvation = -3570.492176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.59702 -37.69376 -37.14960 -35.70623 -33.73515 -33.46033 -32.25781 -31.28862 -29.68173 -27.51404 -26.95059 -26.61810 -22.91286 -22.12749 -21.52448 -20.88859 -19.72190 -19.22938 -17.72235 -17.07382 -16.33480 -15.94801 -15.54951 -15.38867 -14.52433 -14.46261 -14.17296 -14.06805 -13.39968 -13.17538 -13.09641 -12.93265 -12.70176 -12.67390 -12.40746 -12.30058 -12.25121 -12.22336 -11.88282 -11.71816 -11.41167 -11.26398 -11.07949 -11.00514 -10.90414 -10.61618 -10.35787 -10.19539 -10.01565 -9.71760 -9.32512 -9.22095 -8.93548 -8.62582 -8.54875 -8.44533 -6.14203 -4.05244 0.57270 0.88512 1.27523 3.17365 3.23304 3.31657 3.32155 3.50063 3.94089 4.33818 4.45473 4.66009 4.75640 4.79759 5.11477 5.15257 5.26164 5.35795 5.39279 5.50492 5.62103 5.72348 5.76657 5.77618 5.82372 5.97836 6.03011 6.10271 6.19373 6.31929 6.33989 6.44257 6.47227 6.55319 6.70563 6.78724 6.85384 6.96969 7.01871 7.10292 7.29563 7.38890 7.61556 7.70041 7.79569 8.33729 8.92571 9.50142 10.95179 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.005224 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.949455 B = 5358.215160 C = 6125.304565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.032 3.968 3 C -0.152 4.152 4 C -0.057 4.057 5 C -0.156 4.156 6 C 0.026 3.974 7 C -0.134 4.134 8 C -0.678 4.678 9 S 2.690 3.310 10 O -0.959 6.959 11 O -0.971 6.971 12 N -1.113 6.113 13 C 0.157 3.843 14 H 0.081 0.919 15 C -0.110 4.110 16 C 0.010 3.990 17 C -0.488 4.488 18 C 0.077 3.923 19 N -0.888 5.888 20 Si 0.885 3.115 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.265 1.265 24 C -0.019 4.019 25 C -0.124 4.124 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.414 0.586 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.007 0.993 39 H 0.061 0.939 40 H 0.264 0.736 41 H 0.018 0.982 42 H 0.036 0.964 43 H 0.057 0.943 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.288 2.902 -13.623 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 C -0.171 4.171 4 C -0.076 4.076 5 C -0.175 4.175 6 C 0.024 3.976 7 C -0.191 4.191 8 C -0.765 4.765 9 S 2.781 3.219 10 O -0.949 6.949 11 O -0.961 6.961 12 N -0.872 5.872 13 C 0.052 3.948 14 H 0.099 0.901 15 C -0.149 4.149 16 C -0.028 4.028 17 C -0.507 4.507 18 C -0.126 4.126 19 N -0.526 5.526 20 Si 0.713 3.287 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.190 1.190 24 C -0.057 4.057 25 C -0.164 4.164 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.248 0.752 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.026 0.974 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.816 2.591 -14.226 16.438 hybrid contribution 1.369 1.066 1.017 2.012 sum 9.185 3.657 -13.209 16.499 Atomic orbital electron populations 1.21511 0.89505 1.04423 1.04794 1.19678 0.96330 0.91619 0.89274 1.21150 0.94360 0.97737 1.03828 1.21380 0.94455 0.98084 0.93639 1.21083 0.99936 0.91982 1.04459 1.19552 0.91389 0.96272 0.90358 1.21215 1.00103 0.93278 1.04491 1.30524 1.05477 1.19789 1.20753 1.01841 0.73866 0.73371 0.72842 1.93601 1.36111 1.84787 1.80402 1.93564 1.69047 1.60555 1.72966 1.55705 1.71227 1.32379 1.27938 1.21009 0.93227 0.91722 0.88877 0.90109 1.21905 0.98980 0.97637 0.96424 1.19389 0.94183 0.94902 0.94328 1.20035 1.21515 1.18942 0.90224 1.24835 0.95556 0.95616 0.96580 1.69828 1.39320 1.39202 1.04244 0.86714 0.81949 0.81893 0.78102 1.20418 1.21661 1.19002 1.19788 0.95670 0.94973 0.95249 1.22097 0.97733 0.98303 0.98235 0.89200 0.88481 0.90978 0.85282 0.85565 0.85491 0.88895 0.90955 0.90520 0.75200 0.94176 0.92497 0.97423 0.92036 0.92566 0.96364 0.94572 0.92384 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.32 36.00 0.30 -1.75 16 2 C 0.03 0.46 5.56 -104.62 -0.58 -0.12 16 3 C -0.15 -1.87 9.67 -39.58 -0.38 -2.26 16 4 C -0.06 -0.64 10.05 -39.58 -0.40 -1.04 16 5 C -0.16 -1.82 9.68 -39.58 -0.38 -2.20 16 6 C 0.03 0.34 5.87 -104.62 -0.61 -0.27 16 7 C -0.13 -1.60 8.35 36.01 0.30 -1.30 16 8 C -0.68 -9.96 4.55 -39.58 -0.18 -10.14 16 9 S 2.69 41.60 4.84 -107.50 -0.52 41.08 16 10 O -0.96 -16.62 13.61 -57.17 -0.78 -17.40 16 11 O -0.97 -15.75 14.70 -57.17 -0.84 -16.59 16 12 N -1.11 -16.94 5.47 -4.93 -0.03 -16.97 16 13 C 0.16 2.82 2.61 -67.97 -0.18 2.64 16 14 H 0.08 1.48 5.32 -51.93 -0.28 1.20 16 15 C -0.11 -2.18 5.46 -26.63 -0.15 -2.33 16 16 C 0.01 0.24 5.97 -27.49 -0.16 0.08 16 17 C -0.49 -12.25 5.51 -98.92 -0.55 -12.79 16 18 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 19 N -0.89 -24.78 12.73 55.43 0.71 -24.08 16 20 Si 0.88 20.44 27.53 -169.99 -4.68 15.76 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -5.90 6.11 56.52 0.35 -5.56 16 24 C -0.02 -0.41 5.59 -27.49 -0.15 -0.56 16 25 C -0.12 -2.37 5.54 -26.64 -0.15 -2.52 16 26 H 0.09 1.19 7.87 -51.93 -0.41 0.78 16 27 H 0.10 1.53 3.47 -51.93 -0.18 1.35 16 28 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 29 H 0.13 1.30 8.05 -52.49 -0.42 0.88 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.09 1.08 7.83 -51.93 -0.41 0.68 16 33 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 34 H 0.08 0.95 6.28 -51.93 -0.33 0.62 16 35 H 0.41 5.44 8.83 -34.48 -0.30 5.13 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.06 1.60 7.07 -51.93 -0.37 1.24 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.04 0.80 4.59 -51.93 -0.24 0.57 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.66 6.40 -51.93 -0.33 0.33 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -30.00 344.33 -10.57 -40.57 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.25 Total: 5.06 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: -3.37 Total: -32.62 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.68 Total: -41.05 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -1.62 Total: -33.99 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.68 Total: 15.76 kcal Atomic # 16 Polarization: 41.60 SS G_CDS: -0.52 Total: 41.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.00 -10.57 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194653223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.269 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds