Wall clock time and date at job start Tue Mar 31 2020 14:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38235 * 119.99834 * 2 1 4 4 C 1.38239 * 119.99974 * 180.25727 * 3 2 1 5 5 C 1.38241 * 119.99929 * 359.50759 * 4 3 2 6 6 C 1.38239 * 119.99703 * 0.47476 * 5 4 3 7 7 C 1.50704 * 119.99624 * 179.78423 * 6 5 4 8 8 C 1.38233 * 120.00253 * 359.75865 * 6 5 4 9 9 S 1.76193 * 120.00029 * 180.02562 * 8 6 5 10 10 O 1.42100 * 106.40426 * 197.93702 * 9 8 6 11 11 O 1.42097 * 106.40402 * 330.86088 * 9 8 6 12 12 N 1.65606 * 107.21661 * 84.40154 * 9 8 6 13 13 C 1.46501 * 120.00445 * 61.01626 * 12 9 8 14 14 H 1.09003 * 109.41058 * 25.36266 * 13 12 9 15 15 C 1.52958 * 109.41445 * 145.22461 * 13 12 9 16 16 C 1.53229 * 109.40223 * 183.70823 * 15 13 12 17 17 C 1.51270 * 108.53497 * 305.37188 * 16 15 13 18 18 C 1.37879 * 120.84941 * 231.36890 * 17 16 15 19 19 N 1.31508 * 120.00007 * 0.02562 * 18 17 16 20 20 Si 1.86800 * 120.00033 * 179.97438 * 18 17 16 21 21 H 1.48497 * 109.47347 * 90.00325 * 20 18 17 22 22 H 1.48499 * 109.47169 * 210.00551 * 20 18 17 23 23 H 1.48506 * 109.47133 * 330.00401 * 20 18 17 24 24 C 1.51271 * 118.30265 * 51.34777 * 17 16 15 25 25 C 1.52958 * 109.41221 * 265.58103 * 13 12 9 26 26 H 1.09003 * 109.47220 * 97.05511 * 1 2 3 27 27 H 1.09001 * 109.46934 * 217.05257 * 1 2 3 28 28 H 1.08996 * 109.47201 * 337.05362 * 1 2 3 29 29 H 1.07995 * 119.99882 * 359.97438 * 3 2 1 30 30 H 1.07993 * 120.00049 * 179.72674 * 4 3 2 31 31 H 1.07994 * 119.99963 * 180.25889 * 5 4 3 32 32 H 1.08994 * 109.46835 * 263.89398 * 7 6 5 33 33 H 1.08997 * 109.46742 * 23.89610 * 7 6 5 34 34 H 1.09003 * 109.46556 * 143.89527 * 7 6 5 35 35 H 0.97008 * 119.99959 * 241.01920 * 12 9 8 36 36 H 1.08997 * 109.47954 * 303.68249 * 15 13 12 37 37 H 1.08994 * 109.48096 * 63.72978 * 15 13 12 38 38 H 1.09000 * 109.62812 * 65.08542 * 16 15 13 39 39 H 1.08997 * 109.62550 * 185.65915 * 16 15 13 40 40 H 0.97004 * 119.99945 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.62396 * 68.36946 * 24 17 16 42 42 H 1.08998 * 109.62748 * 188.93215 * 24 17 16 43 43 H 1.08996 * 109.48055 * 296.27127 * 25 13 12 44 44 H 1.09003 * 109.48754 * 56.31300 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 0.0001 -0.0005 6 6 3.5805 -1.1971 -0.0001 7 6 4.3341 -2.5022 0.0003 8 6 2.1982 -1.1972 0.0004 9 16 1.3173 -2.7231 0.0016 10 8 -0.0067 -2.4224 -0.4179 11 8 2.1475 -3.6663 -0.6620 12 7 1.2064 -3.2239 1.5762 13 6 0.5099 -2.3934 2.5618 14 1 -0.2231 -1.7665 2.0540 15 6 -0.2035 -3.2936 3.5719 16 6 -1.0072 -2.4271 4.5472 17 6 -0.0748 -1.4105 5.1679 18 6 -0.0096 -1.2536 6.5361 19 7 -0.7637 -1.9933 7.3195 20 14 1.1509 0.0086 7.2773 21 1 0.4474 1.3095 7.4112 22 1 1.5954 -0.4539 8.6166 23 1 2.3327 0.1738 6.3933 24 6 0.7847 -0.5706 4.2490 25 6 1.5233 -1.5044 3.2845 26 1 -0.3634 -0.1262 -1.0199 27 1 -0.3633 -0.8202 0.6192 28 1 -0.3633 0.9463 0.4006 29 1 1.6581 2.1324 -0.0004 30 1 4.1204 2.1325 -0.0098 31 1 5.3517 0.0001 -0.0004 32 1 4.4211 -2.8718 -1.0213 33 1 5.3294 -2.3468 0.4166 34 1 3.7967 -3.2318 0.6062 35 1 1.6027 -4.0672 1.8460 36 1 -0.8778 -3.9684 3.0446 37 1 0.5340 -3.8750 4.1250 38 1 -1.8037 -1.9129 4.0093 39 1 -1.4355 -3.0557 5.3279 40 1 -0.7175 -1.8833 8.2821 41 1 0.1540 0.1155 3.6835 42 1 1.5076 -0.0064 4.8382 43 1 2.2199 -2.1282 3.8444 44 1 2.0730 -0.9111 2.5536 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194653223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:10 Heat of formation + Delta-G solvation = -81.076680 kcal Electronic energy + Delta-G solvation = -27042.537729 eV Core-core repulsion = 23471.254506 eV Total energy + Delta-G solvation = -3571.283222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.53536 -39.19647 -38.46910 -36.96721 -35.41567 -34.42495 -33.17733 -33.03669 -31.40811 -28.63552 -28.49213 -27.56512 -23.91669 -23.87819 -23.20705 -21.83119 -21.31559 -20.48219 -18.98126 -18.28877 -17.80584 -17.30973 -16.67265 -16.42935 -16.37918 -15.71775 -15.24697 -15.05542 -14.98220 -14.59975 -14.38611 -14.08352 -14.06913 -14.04425 -13.88231 -13.68744 -13.46209 -13.26215 -13.12535 -13.01554 -12.81535 -12.73938 -12.58753 -12.29345 -12.16227 -12.10395 -11.87939 -11.71917 -11.47974 -11.31494 -10.88862 -10.75174 -10.52567 -10.26213 -10.05053 -9.55551 -8.13150 -6.07058 -0.58733 -0.11435 0.35118 1.40680 1.43465 1.50966 1.99556 2.43301 2.50740 2.79800 3.14545 3.35851 3.72889 3.77762 3.89787 3.98548 4.19739 4.31624 4.34190 4.37712 4.49412 4.56310 4.60577 4.73996 4.78816 4.79751 4.85388 4.90472 4.95333 5.03738 5.10790 5.21340 5.26891 5.28854 5.30109 5.34602 5.42654 5.45427 5.54029 5.63384 5.69487 5.80553 5.86229 5.96232 6.15040 6.38781 6.99518 7.50670 8.97610 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.005224 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.949455 B = 5358.215160 C = 6125.304565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.013 3.987 3 C -0.159 4.159 4 C -0.053 4.053 5 C -0.157 4.157 6 C 0.012 3.988 7 C -0.140 4.140 8 C -0.693 4.693 9 S 2.699 3.301 10 O -0.983 6.983 11 O -0.981 6.981 12 N -1.107 6.107 13 C 0.167 3.833 14 H 0.080 0.920 15 C -0.104 4.104 16 C 0.005 3.995 17 C -0.495 4.495 18 C 0.022 3.978 19 N -0.932 5.932 20 Si 0.936 3.064 21 H -0.276 1.276 22 H -0.296 1.296 23 H -0.247 1.247 24 C -0.021 4.021 25 C -0.116 4.116 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.150 0.850 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.423 0.577 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.003 0.997 39 H 0.029 0.971 40 H 0.261 0.739 41 H 0.025 0.975 42 H 0.037 0.963 43 H 0.054 0.946 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.840 4.670 -14.984 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.011 3.989 3 C -0.177 4.177 4 C -0.071 4.071 5 C -0.176 4.176 6 C 0.011 3.989 7 C -0.196 4.196 8 C -0.783 4.783 9 S 2.793 3.207 10 O -0.973 6.973 11 O -0.971 6.971 12 N -0.867 5.867 13 C 0.061 3.939 14 H 0.098 0.902 15 C -0.143 4.143 16 C -0.033 4.033 17 C -0.514 4.514 18 C -0.176 4.176 19 N -0.572 5.572 20 Si 0.763 3.237 21 H -0.202 1.202 22 H -0.223 1.223 23 H -0.171 1.171 24 C -0.059 4.059 25 C -0.156 4.156 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.021 0.979 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.365 4.326 -15.608 19.230 hybrid contribution 0.567 0.544 1.348 1.560 sum 10.932 4.870 -14.260 18.617 Atomic orbital electron populations 1.21505 0.90083 1.04435 1.04544 1.19801 0.96243 0.92342 0.90485 1.21481 0.95262 0.97798 1.03190 1.21836 0.94129 0.99442 0.91651 1.21491 1.01511 0.91407 1.03148 1.19819 0.90968 0.97594 0.90562 1.21293 1.01254 0.92602 1.04462 1.30269 1.06187 1.18881 1.22946 1.01345 0.73358 0.73612 0.72379 1.93575 1.37712 1.85220 1.80749 1.93550 1.69081 1.61496 1.73004 1.55476 1.71166 1.32717 1.27373 1.20697 0.93068 0.91392 0.88740 0.90217 1.21741 0.98876 0.97485 0.96217 1.19352 0.94575 0.95023 0.94334 1.20635 1.21211 1.18765 0.90785 1.25589 0.97191 0.97461 0.97363 1.69973 1.41543 1.41428 1.04229 0.85876 0.80831 0.79710 0.77279 1.20208 1.22258 1.17118 1.19809 0.95554 0.95215 0.95367 1.21975 0.97568 0.98012 0.98018 0.89227 0.90466 0.89402 0.83216 0.82132 0.82621 0.89059 0.88422 0.91441 0.74107 0.92778 0.92770 0.97867 0.95242 0.92948 0.95681 0.94482 0.92678 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 8.32 71.23 0.59 -3.43 16 2 C 0.01 0.34 5.56 -19.87 -0.11 0.23 16 3 C -0.16 -3.36 9.67 22.27 0.22 -3.15 16 4 C -0.05 -0.94 10.05 22.27 0.22 -0.72 16 5 C -0.16 -3.01 9.68 22.27 0.22 -2.79 16 6 C 0.01 0.29 5.87 -19.86 -0.12 0.17 16 7 C -0.14 -2.98 8.35 71.24 0.60 -2.38 16 8 C -0.69 -19.04 4.55 22.27 0.10 -18.94 16 9 S 2.70 81.14 4.84 -56.49 -0.27 80.87 16 10 O -0.98 -33.86 13.61 -128.00 -1.74 -35.60 16 11 O -0.98 -30.98 14.70 -128.00 -1.88 -32.86 16 12 N -1.11 -32.55 5.47 -169.50 -0.93 -33.48 16 13 C 0.17 5.86 2.61 44.96 0.12 5.97 16 14 H 0.08 2.87 5.32 -2.39 -0.01 2.85 16 15 C -0.10 -4.11 5.46 30.66 0.17 -3.94 16 16 C 0.01 0.26 5.97 30.11 0.18 0.44 16 17 C -0.49 -24.87 5.51 -16.17 -0.09 -24.96 16 18 C 0.02 1.17 5.46 84.66 0.46 1.64 16 19 N -0.93 -53.55 12.73 21.45 0.27 -53.28 16 20 Si 0.94 41.68 27.53 68.60 1.89 43.57 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.30 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.25 -10.17 6.11 99.48 0.61 -9.56 16 24 C -0.02 -0.91 5.59 30.11 0.17 -0.74 16 25 C -0.12 -4.22 5.54 30.66 0.17 -4.05 16 26 H 0.09 2.33 7.87 -2.39 -0.02 2.31 16 27 H 0.08 2.39 3.47 -2.39 -0.01 2.38 16 28 H 0.09 1.99 8.04 -2.39 -0.02 1.97 16 29 H 0.15 2.45 8.05 -2.91 -0.02 2.42 16 30 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 31 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.09 1.96 7.83 -2.39 -0.02 1.94 16 33 H 0.10 1.53 8.04 -2.39 -0.02 1.51 16 34 H 0.07 1.55 6.28 -2.39 -0.01 1.53 16 35 H 0.42 10.66 8.83 -96.73 -0.85 9.81 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.03 1.59 7.07 -2.39 -0.02 1.57 16 40 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 42 H 0.04 1.56 4.59 -2.39 -0.01 1.54 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 1.89 6.40 -2.39 -0.02 1.88 16 Total: -1.00 -65.04 344.33 0.30 -64.73 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.07 Total: 22.67 kcal Atomic # 6 Polarization: -59.52 SS G_CDS: 2.89 Total: -56.63 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -0.65 Total: -86.76 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -3.62 Total: -68.46 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.89 Total: 43.57 kcal Atomic # 16 Polarization: 81.14 SS G_CDS: -0.27 Total: 80.87 kcal Total: -65.04 0.30 -64.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194653223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.345 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds