Wall clock time and date at job start Tue Mar 31 2020 14:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38230 * 119.99785 * 2 1 4 4 C 1.38238 * 119.99822 * 180.24753 * 3 2 1 5 5 C 1.38239 * 119.99664 * 359.77304 * 4 3 2 6 6 C 1.38234 * 120.00285 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99907 * 179.97438 * 6 5 4 8 8 C 1.38228 * 119.99717 * 179.78722 * 2 1 3 9 9 S 1.76197 * 120.00302 * 0.02562 * 8 2 1 10 10 O 1.42104 * 106.40438 * 147.54039 * 9 8 2 11 11 O 1.42102 * 106.40224 * 14.61567 * 9 8 2 12 12 N 1.65603 * 107.21763 * 261.07851 * 9 8 2 13 13 C 1.46494 * 120.00252 * 63.24544 * 12 9 8 14 14 C 1.50701 * 110.67166 * 296.05803 * 13 12 9 15 15 H 1.08008 * 120.00130 * 118.03926 * 14 13 12 16 16 C 1.37871 * 120.00051 * 298.03625 * 14 13 12 17 17 N 1.31511 * 120.00080 * 5.43302 * 16 14 13 18 18 Si 1.86798 * 120.00201 * 185.42380 * 16 14 13 19 19 H 1.48502 * 109.47038 * 60.00214 * 18 16 14 20 20 H 1.48499 * 109.47385 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47434 * 300.00447 * 18 16 14 22 22 C 1.54884 * 110.76050 * 172.62242 * 13 12 9 23 23 C 1.54273 * 104.19394 * 279.62882 * 22 13 12 24 24 C 1.53878 * 106.59851 * 336.38757 * 23 22 13 25 25 C 1.54267 * 106.59821 * 0.02562 * 24 23 22 26 26 H 1.08992 * 109.47519 * 258.01457 * 1 2 3 27 27 H 1.09000 * 109.47234 * 18.01353 * 1 2 3 28 28 H 1.09006 * 109.47368 * 138.01146 * 1 2 3 29 29 H 1.07998 * 120.00958 * 0.03904 * 3 2 1 30 30 H 1.07997 * 120.00120 * 179.79102 * 4 3 2 31 31 H 1.08002 * 119.99763 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47263 * 269.97960 * 7 6 5 33 33 H 1.08996 * 109.47335 * 29.98437 * 7 6 5 34 34 H 1.09003 * 109.46662 * 149.98342 * 7 6 5 35 35 H 0.97001 * 120.00086 * 243.24186 * 12 9 8 36 36 H 0.97007 * 120.00162 * 185.18189 * 17 16 14 37 37 H 1.09001 * 110.48984 * 160.94868 * 22 13 12 38 38 H 1.09001 * 110.48827 * 38.30166 * 22 13 12 39 39 H 1.09004 * 110.03280 * 217.10501 * 23 22 13 40 40 H 1.08997 * 110.03299 * 95.67289 * 23 22 13 41 41 H 1.08989 * 110.03225 * 119.28691 * 24 23 22 42 42 H 1.09005 * 110.02976 * 240.67084 * 24 23 22 43 43 H 1.08996 * 110.48576 * 142.28733 * 25 24 23 44 44 H 1.09005 * 110.48902 * 264.93584 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 -0.0052 5 6 4.2716 -0.0001 -0.0056 6 6 3.5805 -1.1972 -0.0014 7 6 4.3340 -2.5023 -0.0024 8 6 2.1981 -1.1971 0.0044 9 16 1.3171 -2.7230 0.0094 10 8 2.1129 -3.6482 -0.7187 11 8 -0.0257 -2.4122 -0.3362 12 7 1.2839 -3.2647 1.5740 13 6 0.5953 -2.4843 2.6049 14 6 1.2644 -1.1475 2.7958 15 1 0.7184 -0.2370 2.5973 16 6 2.5736 -1.0868 3.2239 17 7 3.2719 -2.1925 3.3631 18 14 3.3556 0.5660 3.6060 19 1 2.5924 1.2360 4.6895 20 1 4.7597 0.3601 4.0433 21 1 3.3364 1.4161 2.3886 22 6 0.5362 -3.2685 3.9393 23 6 -0.6417 -4.2468 3.7513 24 6 -1.5556 -3.6330 2.6761 25 6 -0.9008 -2.3035 2.2479 26 1 -0.3634 -0.2134 1.0052 27 1 -0.3634 0.9773 -0.3178 28 1 -0.3634 -0.7639 -0.6875 29 1 1.6583 2.1325 0.0006 30 1 4.1205 2.1324 -0.0086 31 1 5.3516 -0.0001 -0.0101 32 1 4.5115 -2.8185 -1.0303 33 1 5.2884 -2.3712 0.5074 34 1 3.7469 -3.2611 0.5149 35 1 1.7203 -4.0989 1.8078 36 1 4.1670 -2.1572 3.7352 37 1 0.3411 -2.5918 4.7712 38 1 1.4647 -3.8161 4.1014 39 1 -1.1887 -4.3570 4.6877 40 1 -0.2721 -5.2165 3.4179 41 1 -1.6295 -4.3048 1.8211 42 1 -2.5463 -3.4461 3.0906 43 1 -1.0214 -2.1468 1.1760 44 1 -1.3277 -1.4705 2.8066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194669250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:45 Heat of formation + Delta-G solvation = -56.914010 kcal Electronic energy + Delta-G solvation = -28679.515433 eV Core-core repulsion = 25109.279982 eV Total energy + Delta-G solvation = -3570.235450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.28752 -39.34976 -38.10929 -36.67407 -34.51234 -34.15852 -32.98536 -32.90219 -29.27498 -28.87742 -28.18791 -27.30067 -25.64850 -23.55948 -21.61282 -21.04052 -20.97808 -20.05890 -18.61642 -17.93962 -17.89906 -16.95414 -16.51855 -16.26591 -16.12212 -15.78030 -15.40379 -14.98884 -14.80587 -14.74706 -14.05190 -13.93176 -13.66204 -13.55156 -13.45768 -13.41648 -13.28685 -13.05626 -12.88326 -12.67275 -12.64658 -12.38948 -12.03613 -11.93854 -11.85936 -11.69055 -11.53593 -11.38548 -11.26173 -10.90708 -10.89668 -10.71045 -10.42598 -9.67523 -9.51972 -9.26856 -7.92861 -6.01906 -0.05441 0.26620 0.63490 1.48306 1.51339 1.59128 2.46852 2.57428 2.76999 3.20076 3.46705 3.72369 4.00798 4.07271 4.12230 4.26429 4.29765 4.35560 4.45925 4.63969 4.67943 4.76908 4.86357 4.95457 5.01675 5.06774 5.11101 5.13955 5.18931 5.24877 5.33165 5.36121 5.40349 5.46599 5.53059 5.63730 5.64917 5.68558 5.77392 5.79999 5.82976 5.92197 6.16388 6.24081 6.56296 6.83496 7.03563 7.68687 9.08246 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.009073 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.288194 B = 3085.489448 C = 3738.334056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.039 3.961 3 C -0.170 4.170 4 C -0.063 4.063 5 C -0.177 4.177 6 C 0.023 3.977 7 C -0.124 4.124 8 C -0.642 4.642 9 S 2.699 3.301 10 O -1.014 7.014 11 O -0.980 6.980 12 N -1.068 6.068 13 C 0.301 3.699 14 C -0.531 4.531 15 H 0.058 0.942 16 C 0.083 3.917 17 N -0.867 5.867 18 Si 0.877 3.123 19 H -0.298 1.298 20 H -0.306 1.306 21 H -0.228 1.228 22 C -0.093 4.093 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.170 4.170 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.402 0.598 36 H 0.254 0.746 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 2.149 -3.792 4.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.037 3.963 3 C -0.188 4.188 4 C -0.081 4.081 5 C -0.195 4.195 6 C 0.021 3.979 7 C -0.180 4.180 8 C -0.731 4.731 9 S 2.795 3.205 10 O -1.004 7.004 11 O -0.970 6.970 12 N -0.826 5.826 13 C 0.215 3.785 14 C -0.571 4.571 15 H 0.076 0.924 16 C -0.122 4.122 17 N -0.503 5.503 18 Si 0.705 3.295 19 H -0.225 1.225 20 H -0.233 1.233 21 H -0.151 1.151 22 C -0.133 4.133 23 C -0.161 4.161 24 C -0.154 4.154 25 C -0.208 4.208 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.235 0.765 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.120 0.880 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.214 1.789 -4.609 5.418 hybrid contribution 1.579 1.197 1.308 2.374 sum -0.635 2.986 -3.301 4.497 Atomic orbital electron populations 1.22050 0.90071 1.04856 1.05964 1.19586 0.96399 0.91641 0.88665 1.21244 0.94663 0.97820 1.05112 1.21451 0.94640 0.98266 0.93784 1.21147 1.00226 0.92225 1.05945 1.19483 0.91767 0.96226 0.90407 1.21057 1.00421 0.93847 1.02705 1.30058 1.05214 1.19289 1.18558 1.01125 0.73325 0.73131 0.72944 1.93468 1.71345 1.63102 1.72529 1.93280 1.35786 1.84327 1.83576 1.55329 1.68916 1.33212 1.25174 1.18549 0.86733 0.88584 0.84619 1.21440 0.96716 0.92235 1.46722 0.92376 1.24958 0.96895 0.96166 0.94231 1.70000 1.10608 1.26985 1.42696 0.86935 0.76733 0.85844 0.79949 1.22513 1.23349 1.15139 1.22261 0.96681 0.96773 0.97585 1.22210 0.96857 0.98549 0.98462 1.22049 0.98452 0.96981 0.97896 1.23515 0.96479 0.96836 1.04018 0.89351 0.90592 0.86483 0.84345 0.84112 0.84936 0.90008 0.90877 0.91521 0.76534 0.93625 0.93565 0.92580 0.92000 0.92566 0.92963 0.91730 0.88048 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.96 8.30 71.24 0.59 -5.37 16 2 C 0.04 1.44 4.46 -19.87 -0.09 1.35 16 3 C -0.17 -5.66 9.16 22.27 0.20 -5.46 16 4 C -0.06 -2.03 8.14 22.27 0.18 -1.85 16 5 C -0.18 -6.10 9.52 22.27 0.21 -5.89 16 6 C 0.02 0.88 5.77 -19.87 -0.11 0.76 16 7 C -0.12 -4.63 8.48 71.23 0.60 -4.02 16 8 C -0.64 -25.62 4.01 22.27 0.09 -25.53 16 9 S 2.70 110.08 4.91 -56.49 -0.28 109.80 16 10 O -1.01 -44.33 14.97 -128.00 -1.92 -46.25 16 11 O -0.98 -39.90 10.32 -128.00 -1.32 -41.22 16 12 N -1.07 -43.12 4.80 -150.10 -0.72 -43.84 16 13 C 0.30 12.25 0.40 4.14 0.00 12.25 16 14 C -0.53 -23.60 4.72 25.60 0.12 -23.47 16 15 H 0.06 2.64 6.01 -2.91 -0.02 2.63 16 16 C 0.08 3.82 4.75 84.65 0.40 4.22 16 17 N -0.87 -40.66 11.75 21.44 0.25 -40.41 16 18 Si 0.88 38.17 29.25 68.60 2.01 40.17 16 19 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.31 -13.98 7.11 99.48 0.71 -13.28 16 21 H -0.23 -9.13 4.56 99.48 0.45 -8.67 16 22 C -0.09 -3.66 5.19 31.67 0.16 -3.50 16 23 C -0.12 -4.05 6.78 31.32 0.21 -3.84 16 24 C -0.12 -3.83 6.78 31.32 0.21 -3.62 16 25 C -0.17 -6.38 4.50 31.66 0.14 -6.23 16 26 H 0.09 3.23 4.17 -2.39 -0.01 3.22 16 27 H 0.08 2.15 7.98 -2.39 -0.02 2.13 16 28 H 0.12 4.23 4.97 -27.13 -0.13 4.10 16 29 H 0.14 3.85 8.02 -2.91 -0.02 3.83 16 30 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.08 2.86 8.08 -2.39 -0.02 2.84 16 33 H 0.07 2.50 8.09 -2.39 -0.02 2.48 16 34 H 0.07 2.72 5.80 -2.39 -0.01 2.71 16 35 H 0.40 15.95 8.63 -96.74 -0.83 15.12 16 36 H 0.25 12.09 8.32 -92.70 -0.77 11.32 16 37 H 0.05 1.91 8.05 -2.39 -0.02 1.89 16 38 H 0.06 2.38 7.44 -2.39 -0.02 2.36 16 39 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.10 3.94 3.69 -2.39 -0.01 3.93 16 44 H 0.06 2.21 8.04 -2.38 -0.02 2.19 16 Total: -1.00 -52.25 331.70 0.77 -51.48 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.18 Total: 40.49 kcal Atomic # 6 Polarization: -73.16 SS G_CDS: 2.94 Total: -70.22 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -0.47 Total: -84.25 kcal Atomic # 8 Polarization: -84.23 SS G_CDS: -3.24 Total: -87.47 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.01 Total: 40.17 kcal Atomic # 16 Polarization: 110.08 SS G_CDS: -0.28 Total: 109.80 kcal Total: -52.25 0.77 -51.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194669250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.435 kcal (2) G-P(sol) polarization free energy of solvation -52.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds