Wall clock time and date at job start Tue Mar 31 2020 13:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00087 * 2 1 4 4 H 1.48497 * 109.47367 * 270.00359 * 3 2 1 5 5 H 1.48503 * 109.47073 * 30.00421 * 3 2 1 6 6 H 1.48501 * 109.47166 * 150.00230 * 3 2 1 7 7 C 1.37880 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00119 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99788 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.46816 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.42894 * 114.00318 * 179.97438 * 11 10 9 13 13 C 1.53123 * 109.52555 * 149.99497 * 12 11 10 14 14 C 1.53036 * 109.27849 * 177.55857 * 13 12 11 15 15 N 1.46851 * 109.52498 * 300.82361 * 14 13 12 16 16 C 1.46903 * 110.99995 * 185.84364 * 15 14 13 17 17 C 1.50693 * 109.47081 * 170.00249 * 16 15 14 18 18 O 1.21447 * 120.00376 * 359.97438 * 17 16 15 19 19 C 1.41235 * 120.00121 * 179.97438 * 17 16 15 20 20 C 1.37181 * 125.48055 * 179.97438 * 19 17 16 21 21 C 1.37206 * 113.24126 * 179.97438 * 20 19 17 22 22 C 1.34023 * 115.14743 * 0.27882 * 21 20 19 23 23 S 1.70615 * 110.99636 * 359.57726 * 22 21 20 24 24 C 1.46844 * 111.19667 * 61.74266 * 15 14 13 25 25 C 1.53042 * 109.52537 * 298.25579 * 24 15 14 26 26 H 0.96999 * 119.99747 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47167 * 59.99372 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99948 * 9 7 2 29 29 H 1.08998 * 109.47656 * 60.00296 * 10 9 7 30 30 H 1.08997 * 109.47358 * 299.99447 * 10 9 7 31 31 H 1.09004 * 109.57450 * 29.84048 * 12 11 10 32 32 H 1.09004 * 109.49766 * 57.61682 * 13 12 11 33 33 H 1.08996 * 109.53414 * 297.52379 * 13 12 11 34 34 H 1.09005 * 109.46107 * 180.80662 * 14 13 12 35 35 H 1.08997 * 109.45567 * 60.83510 * 14 13 12 36 36 H 1.08999 * 109.47363 * 49.99684 * 16 15 14 37 37 H 1.09001 * 109.46394 * 289.99462 * 16 15 14 38 38 H 1.08001 * 123.38093 * 359.97438 * 20 19 17 39 39 H 1.08002 * 122.42309 * 179.97438 * 21 20 19 40 40 H 1.07994 * 124.50003 * 179.72294 * 22 21 20 41 41 H 1.08991 * 109.46375 * 58.27637 * 24 15 14 42 42 H 1.09004 * 109.45866 * 178.24780 * 24 15 14 43 43 H 1.08995 * 109.50284 * 299.24598 * 25 24 15 44 44 H 1.08994 * 109.50486 * 179.11911 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 8 5.4505 -2.6367 -0.0009 12 6 6.0317 -3.9421 -0.0002 13 6 7.3816 -3.9017 -0.7219 14 6 8.0267 -5.2882 -0.6648 15 7 8.2123 -5.6858 0.7366 16 6 8.9546 -6.9500 0.8313 17 6 9.3388 -7.2007 2.2667 18 8 9.0251 -6.4033 3.1274 19 6 10.0636 -8.3629 2.6112 20 6 10.4705 -8.7016 3.8767 21 6 11.1586 -9.8877 3.9249 22 6 11.3189 -10.5014 2.7443 23 16 10.5890 -9.6085 1.4869 24 6 6.9252 -5.7775 1.4374 25 6 6.2470 -4.4055 1.4432 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6801 -0.8912 29 1 3.6578 -3.1507 -0.8907 30 1 3.6585 -3.1502 0.8893 31 1 5.3664 -4.6383 -0.5109 32 1 8.0332 -3.1766 -0.2343 33 1 7.2303 -3.6132 -1.7621 34 1 8.9946 -5.2593 -1.1654 35 1 7.3808 -6.0101 -1.1646 36 1 9.8546 -6.8896 0.2194 37 1 8.3272 -7.7671 0.4751 38 1 10.2694 -8.0955 4.7477 39 1 11.5473 -10.2946 4.8467 40 1 11.8389 -11.4380 2.6074 41 1 6.2846 -6.4971 0.9278 42 1 7.0930 -6.1039 2.4638 43 1 6.8809 -3.6885 1.9647 44 1 5.2846 -4.4774 1.9497 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205647518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:08 Heat of formation + Delta-G solvation = -68.500078 kcal Electronic energy + Delta-G solvation = -24162.357661 eV Core-core repulsion = 20591.619801 eV Total energy + Delta-G solvation = -3570.737860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20411 -40.01619 -38.51795 -37.88138 -35.39730 -33.87130 -32.28893 -31.88068 -31.39960 -28.53613 -26.75074 -25.68574 -24.28023 -23.75996 -22.58935 -21.85279 -20.84759 -20.17243 -19.15875 -18.54419 -17.62102 -17.12076 -16.78013 -16.47355 -16.37563 -16.36454 -16.24546 -15.58738 -15.27873 -14.94350 -14.76263 -14.58701 -14.50675 -13.96218 -13.81590 -13.71720 -13.43753 -13.20886 -13.17869 -12.97196 -12.88885 -12.48095 -12.39913 -12.20255 -11.95615 -11.90234 -11.77201 -11.67471 -11.47141 -11.35800 -10.83763 -10.78845 -10.30853 -9.88823 -9.53342 -9.33435 -8.34538 -6.40229 -0.71188 0.53902 0.93847 1.20301 1.34841 1.36760 1.50439 1.94370 2.33773 2.61924 2.77493 3.00397 3.20487 3.78537 3.82718 4.05577 4.07947 4.14206 4.21232 4.25797 4.31810 4.36064 4.36964 4.40955 4.41901 4.43937 4.54958 4.58145 4.72958 4.83807 4.85410 4.93320 4.97617 5.03740 5.14879 5.20282 5.23712 5.30594 5.34245 5.39783 5.55327 5.93939 6.03932 6.17969 6.41050 6.56514 6.65418 7.24913 8.81452 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.035776 B = 0.001936 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.462592 B =14461.311905 C =14697.051896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.536 4.536 8 H 0.039 0.961 9 C -0.007 4.007 10 C 0.089 3.911 11 O -0.401 6.401 12 C 0.081 3.919 13 C -0.109 4.109 14 C 0.065 3.935 15 N -0.543 5.543 16 C 0.008 3.992 17 C 0.420 3.580 18 O -0.476 6.476 19 C -0.339 4.339 20 C -0.054 4.054 21 C -0.171 4.171 22 C -0.216 4.216 23 S 0.270 5.730 24 C 0.064 3.936 25 C -0.132 4.132 26 H 0.269 0.731 27 H 0.020 0.980 28 H 0.024 0.976 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.142 0.858 39 H 0.163 0.837 40 H 0.200 0.800 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.043 -26.148 1.018 39.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.574 4.574 8 H 0.057 0.943 9 C -0.044 4.044 10 C 0.013 3.987 11 O -0.321 6.321 12 C 0.023 3.977 13 C -0.147 4.147 14 C -0.062 4.062 15 N -0.268 5.268 16 C -0.120 4.120 17 C 0.299 3.701 18 O -0.355 6.355 19 C -0.458 4.458 20 C -0.089 4.089 21 C -0.200 4.200 22 C -0.354 4.354 23 S 0.538 5.462 24 C -0.064 4.064 25 C -0.171 4.171 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.152 0.848 37 H 0.107 0.893 38 H 0.159 0.841 39 H 0.180 0.820 40 H 0.217 0.783 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 28.972 -25.335 0.094 38.487 hybrid contribution -0.867 0.231 1.640 1.869 sum 28.105 -25.103 1.733 37.724 Atomic orbital electron populations 1.70037 1.08055 1.28418 1.51871 1.25912 0.95661 1.03345 0.93733 0.85653 0.79270 0.78278 0.79460 1.18735 1.20372 1.17840 1.21211 0.90956 0.93703 1.51561 0.94298 1.19419 0.94048 0.93768 0.97190 1.22297 0.79199 0.98207 0.98990 1.87882 1.20316 1.28847 1.95095 1.22322 0.95453 0.84366 0.95542 1.21629 0.93997 0.98200 1.00855 1.22131 1.01882 0.94845 0.87329 1.61665 1.19753 1.30456 1.14974 1.22564 1.01604 0.92423 0.95456 1.20413 0.75702 0.82716 0.91239 1.90594 1.46684 1.45465 1.52751 1.24209 1.16263 1.05279 1.00000 1.21211 0.94507 0.96427 0.96732 1.20249 1.03553 0.95763 1.00482 1.25997 1.05343 1.06551 0.97469 1.82846 1.45760 1.09657 1.07892 1.22035 0.88908 0.95675 0.99771 1.21983 1.00111 0.97499 0.97467 0.92163 0.96212 0.95812 0.93735 0.94442 0.92152 0.91563 0.89776 0.87480 0.93091 0.84759 0.89305 0.84050 0.81975 0.78332 0.93977 0.90477 0.92154 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.93 13.96 21.45 0.30 -59.63 16 2 C 0.01 0.68 5.47 84.65 0.46 1.14 16 3 Si 0.95 46.06 27.47 68.60 1.88 47.94 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.25 -11.91 6.54 99.48 0.65 -11.26 16 7 C -0.54 -32.17 9.66 25.60 0.25 -31.92 16 8 H 0.04 2.51 7.99 -2.91 -0.02 2.49 16 9 C -0.01 -0.35 4.41 29.85 0.13 -0.21 16 10 C 0.09 3.91 5.69 71.98 0.41 4.32 16 11 O -0.40 -15.94 9.99 -148.98 -1.49 -17.43 16 12 C 0.08 2.47 2.68 30.68 0.08 2.56 16 13 C -0.11 -2.65 5.75 30.65 0.18 -2.47 16 14 C 0.07 1.15 5.46 86.32 0.47 1.62 16 15 N -0.54 -11.59 4.40 -900.93 -3.96 -15.56 16 16 C 0.01 0.11 4.74 85.55 0.41 0.52 16 17 C 0.42 8.38 6.61 26.42 0.17 8.56 16 18 O -0.48 -13.63 14.70 -3.55 -0.05 -13.68 16 19 C -0.34 -5.20 6.23 22.76 0.14 -5.05 16 20 C -0.05 -0.81 9.95 21.78 0.22 -0.59 16 21 C -0.17 -1.61 10.14 21.07 0.21 -1.40 16 22 C -0.22 -1.34 10.93 66.86 0.73 -0.61 16 23 S 0.27 2.00 22.42 -56.49 -1.27 0.73 16 24 C 0.06 1.59 5.11 86.33 0.44 2.03 16 25 C -0.13 -4.01 5.72 30.65 0.18 -3.83 16 26 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 27 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 28 H 0.02 1.19 7.57 -2.39 -0.02 1.17 16 29 H 0.04 1.88 8.09 -2.39 -0.02 1.86 16 30 H 0.04 1.63 7.96 -2.39 -0.02 1.62 16 31 H 0.06 1.75 7.79 -2.39 -0.02 1.73 16 32 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.11 1.35 8.02 -2.38 -0.02 1.33 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 36 H 0.13 1.29 7.99 -2.39 -0.02 1.28 16 37 H 0.09 0.98 8.12 -2.39 -0.02 0.96 16 38 H 0.14 2.32 8.02 -2.91 -0.02 2.29 16 39 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 40 H 0.20 0.02 8.06 -2.91 -0.02 0.00 16 41 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 2.13 5.78 -2.38 -0.01 2.12 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.06 1.87 7.96 -2.39 -0.02 1.85 16 Total: -1.00 -75.80 369.84 0.82 -74.99 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.92 Total: 7.99 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 4.48 Total: -25.36 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -3.66 Total: -75.19 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.54 Total: -31.11 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.27 Total: 0.73 kcal Total: -75.80 0.82 -74.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205647518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.487 kcal (2) G-P(sol) polarization free energy of solvation -75.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds