Wall clock time and date at job start Tue Mar 31 2020 13:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37945 * 119.89928 * 2 1 4 4 C 1.38709 * 120.31316 * 180.25730 * 3 2 1 5 5 O 1.35967 * 120.14314 * 179.68569 * 4 3 2 6 6 C 1.42900 * 117.00112 * 174.30891 * 5 4 3 7 7 H 1.08999 * 109.47060 * 324.34891 * 6 5 4 8 8 C 1.50708 * 109.47285 * 84.34479 * 6 5 4 9 9 H 1.07994 * 120.00132 * 240.00631 * 8 6 5 10 10 C 1.37879 * 119.99643 * 59.99905 * 8 6 5 11 11 N 1.31510 * 119.99938 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 119.99654 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47067 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46867 * 120.00227 * 12 10 8 15 15 H 1.48499 * 109.46922 * 240.00342 * 12 10 8 16 16 C 1.50701 * 109.47457 * 204.34496 * 6 5 4 17 17 C 1.38230 * 120.00004 * 144.99538 * 16 6 5 18 18 C 1.38237 * 120.00087 * 179.97438 * 17 16 6 19 19 C 1.38237 * 119.99694 * 359.97438 * 18 17 16 20 20 C 1.38233 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99672 * 324.98141 * 16 6 5 22 22 C 1.38867 * 119.71067 * 359.40411 * 4 3 2 23 23 C 1.37626 * 119.87156 * 0.27871 * 22 4 3 24 24 C 1.38922 * 120.85420 * 0.02562 * 23 22 4 25 25 N 1.39747 * 110.18613 * 180.02562 * 24 23 22 26 26 C 1.34366 * 112.21403 * 359.97438 * 25 24 23 27 27 O 1.21291 * 126.42916 * 180.02562 * 26 25 24 28 28 C 1.51147 * 132.78731 * 179.97438 * 23 22 4 29 29 H 1.08997 * 109.47499 * 270.37251 * 1 2 3 30 30 H 1.09004 * 109.46550 * 30.37151 * 1 2 3 31 31 H 1.08998 * 109.47168 * 150.36726 * 1 2 3 32 32 H 1.07995 * 119.84788 * 359.96289 * 3 2 1 33 33 H 0.97006 * 119.99860 * 179.97438 * 11 10 8 34 34 H 1.08004 * 120.00019 * 359.97438 * 17 16 6 35 35 H 1.08002 * 120.00138 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.99374 * 179.72380 * 19 18 17 37 37 H 1.08000 * 120.00040 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.00235 * 359.97438 * 21 16 6 39 39 H 1.08001 * 120.06131 * 180.25320 * 22 4 3 40 40 H 0.96995 * 123.89318 * 179.97438 * 25 24 23 41 41 H 1.08996 * 110.50621 * 298.65499 * 28 23 22 42 42 H 1.08994 * 110.50132 * 61.35186 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1958 0.0000 4 6 3.5817 1.2059 -0.0054 5 8 4.2559 2.3866 -0.0118 6 6 5.6783 2.3221 0.1092 7 1 5.9495 1.5040 0.7765 8 6 6.2878 2.0856 -1.2487 9 1 6.8866 1.2045 -1.4258 10 6 6.0808 2.9942 -2.2649 11 7 5.3519 4.0674 -2.0491 12 14 6.8357 2.7008 -3.9482 13 1 7.6045 1.4305 -3.9313 14 1 5.7576 2.6128 -4.9656 15 1 7.7445 3.8256 -4.2860 16 6 6.1941 3.6215 0.6719 17 6 7.2818 3.6219 1.5249 18 6 7.7553 4.8138 2.0407 19 6 7.1413 6.0054 1.7029 20 6 6.0542 6.0051 0.8490 21 6 5.5796 4.8129 0.3347 22 6 4.2787 0.0048 0.0018 23 6 3.5905 -1.1870 0.0083 24 6 2.2014 -1.2077 0.0074 25 7 1.7387 -2.5263 0.0154 26 6 2.7443 -3.4175 0.0213 27 8 2.6361 -4.6255 0.0284 28 6 4.0377 -2.6308 0.0163 29 1 -0.3634 0.0067 1.0276 30 1 -0.3632 0.8867 -0.5196 31 1 -0.3633 -0.8932 -0.5081 32 1 1.6505 2.1287 -0.0006 33 1 5.2065 4.7068 -2.7639 34 1 7.7617 2.6909 1.7885 35 1 8.6054 4.8142 2.7069 36 1 7.5085 6.9362 2.1095 37 1 5.5743 6.9360 0.5855 38 1 4.7303 4.8127 -0.3322 39 1 5.3587 0.0060 0.0018 40 1 0.7999 -2.7702 0.0166 41 1 4.6183 -2.8556 -0.8784 42 1 4.6182 -2.8457 0.9134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225412636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:36 Heat of formation + Delta-G solvation = -22.845485 kcal Electronic energy + Delta-G solvation = -26700.550290 eV Core-core repulsion = 22996.348210 eV Total energy + Delta-G solvation = -3704.202080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.36741 -40.51657 -39.53071 -38.41704 -36.18811 -34.82376 -34.10322 -32.37001 -31.31994 -30.57819 -29.27292 -28.35737 -27.51813 -25.07525 -23.21243 -22.56118 -22.40451 -22.02243 -21.47569 -19.05343 -18.75368 -17.80143 -17.57538 -17.33812 -16.99573 -16.75138 -16.21630 -15.62148 -15.53007 -15.30649 -15.01649 -14.65325 -14.52172 -14.29878 -14.02588 -13.95059 -13.83881 -13.66763 -13.55307 -13.25202 -13.06649 -12.87530 -12.77909 -12.74217 -12.44373 -12.16982 -11.86273 -11.75593 -11.38495 -11.30798 -11.02938 -10.76182 -10.53597 -9.59128 -9.43239 -9.20379 -8.32736 -7.95147 -6.37902 0.37446 0.41246 0.80801 0.98566 1.37220 1.42085 1.48906 1.49766 2.09318 2.37162 2.78197 2.88551 3.16620 3.25960 3.35590 3.47831 3.92454 4.22352 4.30390 4.35539 4.39225 4.42780 4.48672 4.53763 4.58163 4.62688 4.73323 4.79461 4.84394 4.99348 5.07689 5.16369 5.21132 5.25968 5.38419 5.44221 5.54580 5.61954 5.67510 5.74420 5.85803 5.87825 5.96300 6.05477 6.12637 6.34597 6.51609 6.65003 7.00892 7.13053 7.41892 8.83453 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.003991 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.432728 B = 7013.964527 C = 7587.087110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.053 4.053 3 C -0.155 4.155 4 C 0.135 3.865 5 O -0.311 6.311 6 C 0.243 3.757 7 H 0.037 0.963 8 C -0.556 4.556 9 H 0.061 0.939 10 C 0.047 3.953 11 N -0.859 5.859 12 Si 0.941 3.059 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.282 1.282 16 C -0.071 4.071 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.139 4.139 20 C -0.160 4.160 21 C -0.067 4.067 22 C -0.172 4.172 23 C -0.100 4.100 24 C 0.066 3.934 25 N -0.638 5.638 26 C 0.530 3.470 27 O -0.552 6.552 28 C -0.111 4.111 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.262 0.738 34 H 0.119 0.881 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.419 0.581 41 H 0.134 0.866 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 -3.291 5.756 8.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.056 4.056 3 C -0.174 4.174 4 C 0.087 3.913 5 O -0.224 6.224 6 C 0.189 3.811 7 H 0.055 0.945 8 C -0.592 4.592 9 H 0.079 0.921 10 C -0.158 4.158 11 N -0.494 5.494 12 Si 0.767 3.233 13 H -0.193 1.193 14 H -0.209 1.209 15 H -0.208 1.208 16 C -0.071 4.071 17 C -0.156 4.156 18 C -0.162 4.162 19 C -0.157 4.157 20 C -0.179 4.179 21 C -0.086 4.086 22 C -0.191 4.191 23 C -0.103 4.103 24 C -0.030 4.030 25 N -0.283 5.283 26 C 0.319 3.681 27 O -0.431 6.431 28 C -0.150 4.150 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.259 0.741 41 H 0.151 0.849 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.147 -3.605 5.649 8.450 hybrid contribution 0.361 -0.052 -1.334 1.383 sum -4.786 -3.657 4.315 7.409 Atomic orbital electron populations 1.20789 0.88256 1.03835 1.03613 1.19107 0.97226 0.88543 1.00733 1.20178 0.90855 0.98330 1.08056 1.19256 0.92331 0.85982 0.93747 1.86232 1.23544 1.26954 1.85695 1.18890 0.76139 0.91560 0.94549 0.94539 1.21575 1.33798 1.08022 0.95839 0.92116 1.25548 0.94532 0.94291 1.01388 1.69997 1.36863 1.10467 1.32069 0.85778 0.78351 0.78281 0.80873 1.19304 1.20900 1.20789 1.19934 0.96397 0.95842 0.94941 1.21026 0.97215 0.98905 0.98455 1.21148 1.01114 0.92100 1.01866 1.21267 0.96694 0.98515 0.99221 1.21393 0.98789 0.98076 0.99617 1.21675 1.01146 0.91443 0.94332 1.20388 1.00622 0.90334 1.07767 1.19625 0.93070 0.94400 1.03187 1.17727 0.92760 0.84524 1.07971 1.43402 1.10477 1.04239 1.70138 1.20645 0.87592 0.85815 0.74077 1.90768 1.86636 1.13261 1.52460 1.21101 0.96823 0.89514 1.07535 0.89494 0.90310 0.90600 0.84738 0.92809 0.86316 0.84247 0.84507 0.86212 0.84460 0.85360 0.74133 0.84882 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.96 71.24 0.71 -1.33 16 2 C -0.05 -1.47 5.90 -19.68 -0.12 -1.59 16 3 C -0.15 -5.27 9.61 22.31 0.21 -5.05 16 4 C 0.14 5.44 6.60 22.53 0.15 5.59 16 5 O -0.31 -14.57 8.35 -93.18 -0.78 -15.35 16 6 C 0.24 11.28 2.11 29.10 0.06 11.34 16 7 H 0.04 1.61 6.27 -2.39 -0.01 1.60 16 8 C -0.56 -27.81 7.94 25.60 0.20 -27.61 16 9 H 0.06 3.02 7.81 -2.91 -0.02 2.99 16 10 C 0.05 2.40 5.24 84.66 0.44 2.84 16 11 N -0.86 -44.33 8.52 21.45 0.18 -44.15 16 12 Si 0.94 41.21 29.54 68.60 2.03 43.24 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 16 C -0.07 -3.20 4.80 -19.87 -0.10 -3.30 16 17 C -0.14 -5.42 9.68 22.27 0.22 -5.21 16 18 C -0.14 -4.90 10.05 22.27 0.22 -4.68 16 19 C -0.14 -4.70 10.05 22.27 0.22 -4.47 16 20 C -0.16 -6.22 10.05 22.27 0.22 -5.99 16 21 C -0.07 -3.05 7.45 22.27 0.17 -2.88 16 22 C -0.17 -6.32 8.69 22.28 0.19 -6.13 16 23 C -0.10 -3.08 6.34 -19.70 -0.12 -3.20 16 24 C 0.07 1.84 6.81 38.30 0.26 2.10 16 25 N -0.64 -15.34 5.81 -303.08 -1.76 -17.10 16 26 C 0.53 14.44 8.71 87.94 0.77 15.20 16 27 O -0.55 -18.15 18.03 -3.06 -0.06 -18.20 16 28 C -0.11 -2.78 6.87 29.46 0.20 -2.57 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.40 8.09 -2.38 -0.02 1.38 16 31 H 0.08 1.17 7.58 -2.39 -0.02 1.15 16 32 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 33 H 0.26 13.04 8.31 -92.70 -0.77 12.27 16 34 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 37 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 38 H 0.14 6.92 5.52 -2.91 -0.02 6.91 16 39 H 0.13 4.92 5.70 -2.91 -0.02 4.91 16 40 H 0.42 7.87 8.47 -92.71 -0.79 7.09 16 41 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.14 2.93 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -60.98 350.90 3.82 -57.17 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.28 Total: 31.32 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 3.92 Total: -36.93 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -1.58 Total: -61.24 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.83 Total: -33.55 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -60.98 3.82 -57.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225412636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.320 kcal (2) G-P(sol) polarization free energy of solvation -60.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds