Wall clock time and date at job start Tue Mar 31 2020 13:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37949 * 119.88905 * 2 1 4 4 C 1.38713 * 120.30953 * 180.02562 * 3 2 1 5 5 O 1.35965 * 120.14308 * 180.02562 * 4 3 2 6 6 C 1.42897 * 116.99718 * 185.24282 * 5 4 3 7 7 H 1.08998 * 109.47580 * 35.57790 * 6 5 4 8 8 C 1.50701 * 109.47125 * 275.57922 * 6 5 4 9 9 H 1.07997 * 120.00180 * 330.30069 * 8 6 5 10 10 C 1.37877 * 120.00095 * 150.30313 * 8 6 5 11 11 N 1.31513 * 119.99910 * 2.23507 * 10 8 6 12 12 Si 1.86800 * 120.00048 * 182.23174 * 10 8 6 13 13 H 1.48496 * 109.47035 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.47627 * 300.00310 * 12 10 8 15 15 H 1.48507 * 109.47062 * 60.00342 * 12 10 8 16 16 C 1.50699 * 109.47198 * 155.58265 * 6 5 4 17 17 C 1.38241 * 120.00158 * 38.66991 * 16 6 5 18 18 C 1.38238 * 120.00170 * 179.81529 * 17 16 6 19 19 C 1.38233 * 119.99783 * 0.39688 * 18 17 16 20 20 C 1.38239 * 120.00331 * 359.85601 * 19 18 17 21 21 C 1.38235 * 120.00204 * 218.94707 * 16 6 5 22 22 C 1.38867 * 119.71012 * 0.27703 * 4 3 2 23 23 C 1.37626 * 119.87438 * 359.44982 * 22 4 3 24 24 C 1.38932 * 120.84920 * 0.55514 * 23 22 4 25 25 N 1.39747 * 110.18413 * 179.72454 * 24 23 22 26 26 C 1.34363 * 112.21559 * 359.97438 * 25 24 23 27 27 O 1.21292 * 126.42809 * 180.02562 * 26 25 24 28 28 C 1.51138 * 132.79546 * 180.19054 * 23 22 4 29 29 H 1.08998 * 109.47201 * 90.00391 * 1 2 3 30 30 H 1.09007 * 109.46406 * 209.99593 * 1 2 3 31 31 H 1.08992 * 109.47216 * 329.99633 * 1 2 3 32 32 H 1.07998 * 119.85216 * 0.05076 * 3 2 1 33 33 H 0.97002 * 120.00407 * 357.03043 * 11 10 8 34 34 H 1.08000 * 119.99644 * 0.02562 * 17 16 6 35 35 H 1.07993 * 120.00005 * 180.23235 * 18 17 16 36 36 H 1.08004 * 120.00032 * 179.83671 * 19 18 17 37 37 H 1.08001 * 120.00387 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99655 * 359.97438 * 21 16 6 39 39 H 1.07999 * 120.06792 * 179.69938 * 22 4 3 40 40 H 0.96994 * 123.89237 * 179.97438 * 25 24 23 41 41 H 1.09003 * 110.50164 * 61.66918 * 28 23 22 42 42 H 1.09001 * 110.61776 * 299.04235 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1945 1.1960 0.0000 4 6 3.5816 1.2062 -0.0005 5 8 4.2557 2.3870 0.0000 6 6 5.6784 2.3217 -0.1170 7 1 5.9514 1.4986 -0.7772 8 6 6.2845 2.0959 1.2442 9 1 5.7856 2.4695 2.1262 10 6 7.4760 1.4125 1.3636 11 7 8.1058 0.9960 0.2868 12 14 8.1957 1.0783 3.0546 13 1 9.4717 0.3325 2.9109 14 1 8.4501 2.3666 3.7479 15 1 7.2370 0.2693 3.8496 16 6 6.1954 3.6168 -0.6884 17 6 5.6283 4.8174 -0.3034 18 6 6.1051 6.0056 -0.8247 19 6 7.1434 5.9927 -1.7372 20 6 7.7070 4.7919 -2.1262 21 6 7.2328 3.6039 -1.6019 22 6 4.2787 0.0052 -0.0069 23 6 3.5907 -1.1868 -0.0012 24 6 2.2015 -1.2076 -0.0006 25 7 1.7390 -2.5263 -0.0007 26 6 2.7446 -3.4173 -0.0018 27 8 2.6365 -4.6254 -0.0026 28 6 4.0379 -2.6305 -0.0017 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6503 2.1288 0.0008 33 1 7.7112 1.1315 -0.5889 34 1 4.8151 4.8271 0.4072 35 1 5.6646 6.9437 -0.5211 36 1 7.5141 6.9209 -2.1465 37 1 8.5179 4.7818 -2.8394 38 1 7.6731 2.6657 -1.9058 39 1 5.3586 0.0064 -0.0123 40 1 0.8002 -2.7702 0.0000 41 1 4.6189 -2.8505 0.8939 42 1 4.6193 -2.8519 -0.8968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225412637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:40 Heat of formation + Delta-G solvation = -22.395148 kcal Electronic energy + Delta-G solvation = -26613.268325 eV Core-core repulsion = 22909.085773 eV Total energy + Delta-G solvation = -3704.182551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22666 -39.30902 -38.36021 -37.23099 -35.00856 -33.53041 -33.03306 -30.89620 -30.23157 -29.51006 -27.86880 -26.61339 -26.28697 -23.55990 -22.08200 -21.42320 -21.20452 -20.89731 -20.24713 -17.79596 -17.46900 -16.76047 -16.44076 -16.13907 -15.85948 -15.08967 -14.59729 -14.47263 -14.11185 -13.91747 -13.81982 -13.58794 -13.44613 -13.24309 -12.84275 -12.76627 -12.71229 -12.41877 -12.26243 -12.13921 -11.88020 -11.78178 -11.51702 -11.07572 -10.91278 -10.58710 -10.47963 -10.29021 -10.10994 -9.92229 -9.80976 -9.01050 -8.77164 -8.43858 -8.27335 -7.89962 -7.16205 -6.68746 -4.48118 1.54978 1.57345 2.04369 2.06451 2.64763 3.16859 3.30222 3.31414 3.49644 3.99480 4.05719 4.28225 4.32981 4.53606 4.63176 4.98666 5.03630 5.20087 5.39849 5.47664 5.48277 5.52049 5.54432 5.56964 5.64450 5.67534 5.81139 5.91115 5.99994 6.13561 6.22507 6.24498 6.35087 6.44159 6.47013 6.63674 6.71784 6.74409 6.91971 6.96633 7.09014 7.13861 7.18732 7.40362 7.54786 7.68670 7.95587 8.09173 8.36855 8.45769 9.22108 10.63770 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.004326 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.836347 B = 6471.246267 C = 7835.039494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.068 4.068 3 C -0.142 4.142 4 C 0.157 3.843 5 O -0.315 6.315 6 C 0.225 3.775 7 H 0.047 0.953 8 C -0.606 4.606 9 H 0.065 0.935 10 C 0.034 3.966 11 N -0.891 5.891 12 Si 1.066 2.934 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.038 4.038 17 C -0.104 4.104 18 C -0.129 4.129 19 C -0.145 4.145 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.146 4.146 23 C -0.096 4.096 24 C 0.074 3.926 25 N -0.653 5.653 26 C 0.529 3.471 27 O -0.522 6.522 28 C -0.116 4.116 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.269 0.731 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.150 0.850 40 H 0.406 0.594 41 H 0.123 0.877 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 1.496 -2.781 9.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.071 4.071 3 C -0.161 4.161 4 C 0.109 3.891 5 O -0.228 6.228 6 C 0.171 3.829 7 H 0.065 0.935 8 C -0.643 4.643 9 H 0.083 0.917 10 C -0.173 4.173 11 N -0.526 5.526 12 Si 0.893 3.107 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.209 1.209 16 C -0.039 4.039 17 C -0.122 4.122 18 C -0.147 4.147 19 C -0.163 4.163 20 C -0.141 4.141 21 C -0.133 4.133 22 C -0.165 4.165 23 C -0.098 4.098 24 C -0.021 4.021 25 N -0.297 5.297 26 C 0.317 3.683 27 O -0.399 6.399 28 C -0.155 4.155 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.167 0.833 40 H 0.244 0.756 41 H 0.141 0.859 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.855 0.331 -1.998 8.111 hybrid contribution -1.407 0.639 -0.631 1.670 sum -9.262 0.971 -2.630 9.677 Atomic orbital electron populations 1.20679 0.91118 1.02576 1.02128 1.18750 0.95235 0.89565 1.03569 1.19951 0.91305 0.97201 1.07656 1.18721 0.91022 0.85542 0.93808 1.85973 1.23624 1.26824 1.86384 1.19257 0.74643 0.91600 0.97427 0.93548 1.22195 1.10699 1.39893 0.91557 0.91717 1.25885 0.93746 0.92526 1.05159 1.70911 1.38590 1.44063 0.99002 0.83557 0.76567 0.76940 0.73643 1.20384 1.21061 1.20942 1.20177 0.95324 0.95775 0.92581 1.20888 0.99955 0.91711 0.99668 1.21016 0.97709 0.97607 0.98379 1.20903 0.98277 0.97319 0.99846 1.20959 0.99910 0.92676 1.00582 1.20928 0.97285 0.98118 0.96952 1.20687 1.01922 0.89692 1.04184 1.19489 0.92284 0.94171 1.03903 1.17700 0.92967 0.83943 1.07510 1.43555 1.09831 1.05152 1.71167 1.20589 0.87004 0.86205 0.74512 1.90776 1.86227 1.12144 1.50731 1.21047 0.96844 0.91255 1.06354 0.91288 0.92291 0.91071 0.85069 0.91823 0.86398 0.87091 0.87214 0.86950 0.86384 0.83286 0.75650 0.85876 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.96 36.01 0.36 -0.72 16 2 C -0.07 -0.95 5.90 -104.33 -0.62 -1.57 16 3 C -0.14 -2.25 9.61 -39.51 -0.38 -2.63 16 4 C 0.16 3.01 6.60 -39.17 -0.26 2.75 16 5 O -0.31 -6.72 9.07 -19.63 -0.18 -6.90 16 6 C 0.22 5.11 1.66 -29.03 -0.05 5.06 16 7 H 0.05 1.10 4.63 -51.93 -0.24 0.86 16 8 C -0.61 -15.16 7.72 -34.44 -0.27 -15.42 16 9 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 10 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16 11 N -0.89 -23.28 13.63 55.43 0.76 -22.53 16 12 Si 1.07 23.20 29.90 -169.99 -5.08 18.12 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 16 C -0.04 -0.82 4.96 -104.62 -0.52 -1.34 16 17 C -0.10 -2.06 9.36 -39.58 -0.37 -2.43 16 18 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 19 C -0.15 -2.39 10.05 -39.58 -0.40 -2.79 16 20 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 21 C -0.11 -2.33 9.42 -39.58 -0.37 -2.71 16 22 C -0.15 -2.79 8.69 -39.57 -0.34 -3.13 16 23 C -0.10 -1.59 6.34 -104.37 -0.66 -2.25 16 24 C 0.07 1.10 6.81 -83.60 -0.57 0.53 16 25 N -0.65 -8.64 5.81 -9.66 -0.06 -8.70 16 26 C 0.53 7.97 8.71 -10.84 -0.09 7.87 16 27 O -0.52 -9.24 18.03 5.55 0.10 -9.14 16 28 C -0.12 -1.68 6.87 -28.49 -0.20 -1.88 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.52 7.58 -51.93 -0.39 0.12 16 31 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.27 6.87 5.03 -40.82 -0.21 6.66 16 34 H 0.12 2.30 7.74 -52.49 -0.41 1.89 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 2.43 6.77 -52.49 -0.36 2.08 16 39 H 0.15 3.21 5.70 -52.49 -0.30 2.91 16 40 H 0.41 4.33 8.47 -40.82 -0.35 3.99 16 41 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -28.70 354.43 -9.58 -38.28 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -4.83 Total: 10.61 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -5.63 Total: -25.09 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.70 Total: -31.23 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.08 Total: -16.04 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.08 Total: 18.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.70 -9.58 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225412637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.886 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds