Wall clock time and date at job start Tue Mar 31 2020 13:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37949 * 119.88905 * 2 1 4 4 C 1.38713 * 120.30953 * 180.02562 * 3 2 1 5 5 O 1.35965 * 120.14308 * 180.02562 * 4 3 2 6 6 C 1.42897 * 116.99718 * 185.24282 * 5 4 3 7 7 H 1.08998 * 109.47580 * 35.57790 * 6 5 4 8 8 C 1.50701 * 109.47125 * 275.57922 * 6 5 4 9 9 H 1.07997 * 120.00180 * 330.30069 * 8 6 5 10 10 C 1.37877 * 120.00095 * 150.30313 * 8 6 5 11 11 N 1.31513 * 119.99910 * 2.23507 * 10 8 6 12 12 Si 1.86800 * 120.00048 * 182.23174 * 10 8 6 13 13 H 1.48496 * 109.47035 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.47627 * 300.00310 * 12 10 8 15 15 H 1.48507 * 109.47062 * 60.00342 * 12 10 8 16 16 C 1.50699 * 109.47198 * 155.58265 * 6 5 4 17 17 C 1.38241 * 120.00158 * 38.66991 * 16 6 5 18 18 C 1.38238 * 120.00170 * 179.81529 * 17 16 6 19 19 C 1.38233 * 119.99783 * 0.39688 * 18 17 16 20 20 C 1.38239 * 120.00331 * 359.85601 * 19 18 17 21 21 C 1.38235 * 120.00204 * 218.94707 * 16 6 5 22 22 C 1.38867 * 119.71012 * 0.27703 * 4 3 2 23 23 C 1.37626 * 119.87438 * 359.44982 * 22 4 3 24 24 C 1.38932 * 120.84920 * 0.55514 * 23 22 4 25 25 N 1.39747 * 110.18413 * 179.72454 * 24 23 22 26 26 C 1.34363 * 112.21559 * 359.97438 * 25 24 23 27 27 O 1.21292 * 126.42809 * 180.02562 * 26 25 24 28 28 C 1.51138 * 132.79546 * 180.19054 * 23 22 4 29 29 H 1.08998 * 109.47201 * 90.00391 * 1 2 3 30 30 H 1.09007 * 109.46406 * 209.99593 * 1 2 3 31 31 H 1.08992 * 109.47216 * 329.99633 * 1 2 3 32 32 H 1.07998 * 119.85216 * 0.05076 * 3 2 1 33 33 H 0.97002 * 120.00407 * 357.03043 * 11 10 8 34 34 H 1.08000 * 119.99644 * 0.02562 * 17 16 6 35 35 H 1.07993 * 120.00005 * 180.23235 * 18 17 16 36 36 H 1.08004 * 120.00032 * 179.83671 * 19 18 17 37 37 H 1.08001 * 120.00387 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99655 * 359.97438 * 21 16 6 39 39 H 1.07999 * 120.06792 * 179.69938 * 22 4 3 40 40 H 0.96994 * 123.89237 * 179.97438 * 25 24 23 41 41 H 1.09003 * 110.50164 * 61.66918 * 28 23 22 42 42 H 1.09001 * 110.61776 * 299.04235 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1945 1.1960 0.0000 4 6 3.5816 1.2062 -0.0005 5 8 4.2557 2.3870 0.0000 6 6 5.6784 2.3217 -0.1170 7 1 5.9514 1.4986 -0.7772 8 6 6.2845 2.0959 1.2442 9 1 5.7856 2.4695 2.1262 10 6 7.4760 1.4125 1.3636 11 7 8.1058 0.9960 0.2868 12 14 8.1957 1.0783 3.0546 13 1 9.4717 0.3325 2.9109 14 1 8.4501 2.3666 3.7479 15 1 7.2370 0.2693 3.8496 16 6 6.1954 3.6168 -0.6884 17 6 5.6283 4.8174 -0.3034 18 6 6.1051 6.0056 -0.8247 19 6 7.1434 5.9927 -1.7372 20 6 7.7070 4.7919 -2.1262 21 6 7.2328 3.6039 -1.6019 22 6 4.2787 0.0052 -0.0069 23 6 3.5907 -1.1868 -0.0012 24 6 2.2015 -1.2076 -0.0006 25 7 1.7390 -2.5263 -0.0007 26 6 2.7446 -3.4173 -0.0018 27 8 2.6365 -4.6254 -0.0026 28 6 4.0379 -2.6305 -0.0017 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6503 2.1288 0.0008 33 1 7.7112 1.1315 -0.5889 34 1 4.8151 4.8271 0.4072 35 1 5.6646 6.9437 -0.5211 36 1 7.5141 6.9209 -2.1465 37 1 8.5179 4.7818 -2.8394 38 1 7.6731 2.6657 -1.9058 39 1 5.3586 0.0064 -0.0123 40 1 0.8002 -2.7702 0.0000 41 1 4.6189 -2.8505 0.8939 42 1 4.6193 -2.8519 -0.8968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225412637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:39 Heat of formation + Delta-G solvation = -37.186463 kcal Electronic energy + Delta-G solvation = -26613.909724 eV Core-core repulsion = 22909.085773 eV Total energy + Delta-G solvation = -3704.823951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.49508 -40.80616 -39.75029 -38.64073 -36.34327 -35.28865 -34.25860 -32.44655 -31.68117 -30.72994 -29.24192 -28.09305 -27.59685 -25.31699 -23.51985 -22.79464 -22.54931 -22.12565 -21.66907 -19.44399 -18.85169 -18.30963 -17.81557 -17.53349 -17.09790 -16.46921 -16.22759 -15.82603 -15.70580 -15.54157 -15.19161 -14.78101 -14.63239 -14.55484 -14.19044 -14.14020 -13.94323 -13.87111 -13.73280 -13.59273 -13.21561 -12.87176 -12.78602 -12.72085 -12.49708 -12.02657 -11.95832 -11.92337 -11.51969 -11.41661 -11.27999 -10.67610 -10.65800 -9.72825 -9.71401 -9.45375 -8.74170 -8.46902 -6.46598 0.21972 0.27827 0.58257 0.60255 1.38174 1.50616 1.55145 1.75124 1.98926 2.42848 2.56401 2.73500 3.00018 3.09066 3.14607 3.37530 3.80587 4.07379 4.10964 4.18677 4.22725 4.30161 4.31601 4.36446 4.38044 4.48980 4.55083 4.64226 4.80005 4.82419 4.83347 4.92949 5.05364 5.18338 5.21496 5.24748 5.28739 5.43165 5.57725 5.65547 5.69087 5.70380 5.76911 5.84473 5.90563 6.05862 6.22875 6.46295 6.70889 6.93142 7.30830 8.65644 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.004326 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.836347 B = 6471.246267 C = 7835.039494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.053 4.053 3 C -0.139 4.139 4 C 0.123 3.877 5 O -0.327 6.327 6 C 0.235 3.765 7 H 0.025 0.975 8 C -0.611 4.611 9 H 0.045 0.955 10 C -0.004 4.004 11 N -0.912 5.912 12 Si 1.101 2.899 13 H -0.279 1.279 14 H -0.275 1.275 15 H -0.273 1.273 16 C -0.069 4.069 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.135 4.135 20 C -0.124 4.124 21 C -0.137 4.137 22 C -0.168 4.168 23 C -0.106 4.106 24 C 0.081 3.919 25 N -0.635 5.635 26 C 0.535 3.465 27 O -0.546 6.546 28 C -0.117 4.117 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.263 0.737 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.423 0.577 41 H 0.129 0.871 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.995 2.831 -2.935 11.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.158 4.158 4 C 0.076 3.924 5 O -0.241 6.241 6 C 0.180 3.820 7 H 0.043 0.957 8 C -0.648 4.648 9 H 0.064 0.936 10 C -0.206 4.206 11 N -0.548 5.548 12 Si 0.924 3.076 13 H -0.204 1.204 14 H -0.201 1.201 15 H -0.198 1.198 16 C -0.069 4.069 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.155 4.155 22 C -0.187 4.187 23 C -0.109 4.109 24 C -0.015 4.015 25 N -0.280 5.280 26 C 0.324 3.676 27 O -0.425 6.425 28 C -0.156 4.156 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.169 0.831 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.263 0.737 41 H 0.146 0.854 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.727 1.674 -2.159 10.103 hybrid contribution -0.959 0.255 -0.657 1.190 sum -10.686 1.929 -2.816 11.218 Atomic orbital electron populations 1.20816 0.87437 1.04304 1.03855 1.19182 0.97616 0.88166 1.00606 1.20242 0.89818 0.98975 1.06775 1.19150 0.92424 0.84864 0.95985 1.85911 1.22791 1.28105 1.87268 1.18977 0.75272 0.91845 0.95872 0.95720 1.22271 1.10649 1.39749 0.92152 0.93631 1.26889 0.94283 0.92279 1.07127 1.70957 1.39155 1.45569 0.99167 0.83112 0.76152 0.77292 0.71055 1.20436 1.20101 1.19819 1.20210 0.96555 0.95832 0.94320 1.20979 1.00353 0.92318 1.00325 1.21423 0.97377 0.97812 0.97445 1.21398 0.96991 0.98379 0.98471 1.21323 1.00303 0.92082 1.00452 1.20971 0.97750 0.98867 0.97961 1.20430 1.00384 0.91096 1.06779 1.19577 0.93469 0.94167 1.03683 1.17782 0.92250 0.84903 1.06571 1.43345 1.10515 1.04009 1.70127 1.20468 0.87282 0.85820 0.74064 1.90772 1.86514 1.13096 1.52091 1.21109 0.97246 0.90051 1.07200 0.89352 0.90476 0.89555 0.83100 0.92501 0.87034 0.83482 0.82892 0.84165 0.88166 0.86755 0.73679 0.85352 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.96 71.24 0.71 -1.01 16 2 C -0.05 -1.36 5.90 -19.68 -0.12 -1.48 16 3 C -0.14 -4.34 9.61 22.31 0.21 -4.13 16 4 C 0.12 4.93 6.60 22.53 0.15 5.08 16 5 O -0.33 -14.85 9.07 -93.16 -0.85 -15.69 16 6 C 0.24 11.48 1.66 29.10 0.05 11.53 16 7 H 0.03 1.31 4.63 -2.39 -0.01 1.30 16 8 C -0.61 -32.47 7.72 25.60 0.20 -32.27 16 9 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 10 C 0.00 -0.20 5.45 84.65 0.46 0.26 16 11 N -0.91 -50.50 13.63 21.45 0.29 -50.21 16 12 Si 1.10 48.25 29.90 68.60 2.05 50.30 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 C -0.07 -3.11 4.96 -19.86 -0.10 -3.21 16 17 C -0.12 -4.88 9.36 22.27 0.21 -4.67 16 18 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 19 C -0.13 -4.01 10.05 22.27 0.22 -3.78 16 20 C -0.12 -4.21 10.05 22.27 0.22 -3.99 16 21 C -0.14 -5.81 9.42 22.27 0.21 -5.60 16 22 C -0.17 -6.85 8.69 22.28 0.19 -6.66 16 23 C -0.11 -3.59 6.34 -19.70 -0.13 -3.72 16 24 C 0.08 2.28 6.81 38.30 0.26 2.54 16 25 N -0.64 -15.47 5.81 -303.09 -1.76 -17.23 16 26 C 0.53 15.54 8.71 87.94 0.77 16.31 16 27 O -0.55 -18.75 18.03 -3.07 -0.06 -18.81 16 28 C -0.12 -3.44 6.87 29.46 0.20 -3.24 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.00 7.58 -2.38 -0.02 0.98 16 31 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 32 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 33 H 0.26 14.53 5.03 -92.71 -0.47 14.06 16 34 H 0.11 4.49 7.74 -2.91 -0.02 4.46 16 35 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 36 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 38 H 0.10 4.48 6.77 -2.91 -0.02 4.46 16 39 H 0.11 5.46 5.70 -2.91 -0.02 5.44 16 40 H 0.42 7.69 8.47 -92.71 -0.79 6.90 16 41 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 42 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -66.24 354.43 4.22 -62.02 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.59 Total: 31.34 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 3.95 Total: -41.72 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -1.47 Total: -67.44 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.90 Total: -34.50 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.05 Total: 50.30 kcal Total: -66.24 4.22 -62.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225412637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.835 kcal (2) G-P(sol) polarization free energy of solvation -66.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds