Wall clock time and date at job start Tue Mar 31 2020 13:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37947 * 119.84487 * 2 1 4 4 C 1.39308 * 120.20581 * 180.33238 * 3 2 1 5 5 C 1.38930 * 119.04091 * 359.65887 * 4 3 2 6 6 C 1.37628 * 120.85530 * 0.02873 * 5 4 3 7 7 C 1.38702 * 119.84110 * 179.70888 * 2 1 3 8 8 O 1.35965 * 120.14595 * 359.97438 * 7 2 1 9 9 C 1.42898 * 117.00060 * 174.15699 * 8 7 2 10 10 H 1.08998 * 109.47672 * 324.50114 * 9 8 7 11 11 C 1.50704 * 109.46999 * 84.50150 * 9 8 7 12 12 H 1.08001 * 119.99609 * 29.51602 * 11 9 8 13 13 C 1.37871 * 120.00274 * 209.51930 * 11 9 8 14 14 N 1.31516 * 119.99971 * 1.78173 * 13 11 9 15 15 Si 1.86799 * 120.00377 * 181.78035 * 13 11 9 16 16 H 1.48501 * 109.47271 * 179.97438 * 15 13 11 17 17 H 1.48490 * 109.47241 * 300.00372 * 15 13 11 18 18 H 1.48505 * 109.46936 * 60.00132 * 15 13 11 19 19 C 1.50704 * 109.47140 * 204.49866 * 9 8 7 20 20 C 1.38232 * 119.99941 * 321.03483 * 19 9 8 21 21 C 1.38242 * 119.99697 * 179.80938 * 20 19 9 22 22 C 1.38238 * 119.99653 * 0.40017 * 21 20 19 23 23 C 1.38232 * 120.00541 * 359.85325 * 22 21 20 24 24 C 1.38235 * 119.99618 * 359.96095 * 23 22 21 25 25 C 1.51146 * 106.35238 * 180.02562 * 5 4 3 26 26 C 1.51377 * 104.10400 * 359.97438 * 25 5 4 27 27 O 1.21296 * 126.42998 * 180.02562 * 26 25 5 28 28 N 1.34363 * 107.13940 * 359.97438 * 26 25 5 29 29 H 1.09006 * 109.47346 * 270.29019 * 1 2 3 30 30 H 1.09006 * 109.47346 * 30.29179 * 1 2 3 31 31 H 1.09002 * 109.47217 * 150.28804 * 1 2 3 32 32 H 1.08004 * 119.89665 * 359.96369 * 3 2 1 33 33 H 1.08001 * 120.06180 * 179.97438 * 6 5 4 34 34 H 0.97009 * 120.00146 * 356.59737 * 14 13 11 35 35 H 1.07995 * 120.00165 * 0.02562 * 20 19 9 36 36 H 1.07998 * 120.00048 * 180.22903 * 21 20 19 37 37 H 1.08001 * 119.99431 * 179.83183 * 22 21 20 38 38 H 1.07996 * 120.00094 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.99885 * 179.97438 * 24 23 22 40 40 H 1.09001 * 110.49995 * 118.65450 * 25 5 4 41 41 H 1.08999 * 110.49988 * 241.33963 * 25 5 4 42 42 H 0.97000 * 123.89055 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.1965 0.0000 4 6 3.5865 1.2053 -0.0070 5 6 4.2686 -0.0050 -0.0067 6 6 3.5858 -1.2000 -0.0002 7 6 2.1971 -1.2031 0.0061 8 8 1.5170 -2.3804 0.0126 9 6 2.2893 -3.5764 -0.1110 10 1 3.1328 -3.3971 -0.7775 11 6 2.7998 -3.9871 1.2462 12 1 2.2338 -3.7423 2.1328 13 6 3.9895 -4.6753 1.3559 14 7 4.6962 -4.9427 0.2794 15 14 4.5976 -5.2279 3.0334 16 1 5.8903 -5.9427 2.8806 17 1 4.7875 -4.0419 3.9065 18 1 3.5982 -6.1392 3.6467 19 6 1.4267 -4.6751 -0.6767 20 6 0.1087 -4.7941 -0.2773 21 6 -0.6836 -5.7995 -0.7993 22 6 -0.1554 -6.6909 -1.7144 23 6 1.1641 -6.5751 -2.1099 24 6 1.9552 -5.5673 -1.5908 25 6 5.7410 0.3363 -0.0144 26 6 5.7688 1.8498 -0.0195 27 8 6.7578 2.5520 -0.0267 28 7 4.4923 2.2693 -0.0157 29 1 -0.3634 0.0052 1.0277 30 1 -0.3634 0.8874 -0.5184 31 1 -0.3634 -0.8926 -0.5094 32 1 1.6492 2.1294 -0.0006 33 1 4.1290 -2.1335 -0.0005 34 1 4.3570 -4.6995 -0.5963 35 1 -0.3030 -4.0995 0.4399 36 1 -1.7143 -5.8903 -0.4901 37 1 -0.7736 -7.4780 -2.1202 38 1 1.5768 -7.2717 -2.8245 39 1 2.9863 -5.4770 -1.8994 40 1 6.2275 -0.0519 0.8804 41 1 6.2193 -0.0571 -0.9114 42 1 4.2299 3.2031 -0.0181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225511266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:00 Heat of formation + Delta-G solvation = -21.922528 kcal Electronic energy + Delta-G solvation = -26769.904723 eV Core-core repulsion = 23065.742665 eV Total energy + Delta-G solvation = -3704.162057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17243 -39.36951 -38.38794 -37.14242 -35.17880 -33.47223 -32.54236 -30.84532 -30.24249 -29.72929 -28.44006 -26.67132 -25.15895 -23.64291 -22.27624 -21.89314 -21.15683 -20.65169 -20.18270 -17.74209 -17.57483 -16.79802 -16.29539 -15.95276 -15.82373 -15.11727 -14.69470 -14.45052 -14.18292 -13.92617 -13.84861 -13.71180 -13.26723 -13.08057 -12.75630 -12.69840 -12.60351 -12.32768 -12.12995 -12.08970 -11.89868 -11.70947 -11.51746 -11.08006 -10.90239 -10.56563 -10.49052 -10.28780 -10.10346 -9.87491 -9.79511 -9.05963 -8.72612 -8.42596 -8.28719 -7.91759 -7.13280 -6.68273 -4.48229 1.53953 1.61877 2.02928 2.05221 2.65104 3.17221 3.30003 3.31468 3.49455 4.01945 4.07098 4.27701 4.33618 4.53474 4.66157 5.02477 5.11725 5.28942 5.42180 5.47083 5.50603 5.55248 5.58318 5.63924 5.82477 5.85572 5.93383 5.95394 6.11621 6.13642 6.23141 6.28374 6.36091 6.44567 6.57053 6.63999 6.71067 6.72660 6.93469 6.98750 7.07841 7.13384 7.21051 7.39897 7.54579 7.67576 7.95553 8.09958 8.37057 8.45754 9.22039 10.63694 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.004533 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.567218 B = 6175.580893 C = 7554.536200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.107 4.107 3 C -0.102 4.102 4 C 0.077 3.923 5 C -0.105 4.105 6 C -0.139 4.139 7 C 0.153 3.847 8 O -0.311 6.311 9 C 0.224 3.776 10 H 0.047 0.953 11 C -0.606 4.606 12 H 0.064 0.936 13 C 0.034 3.966 14 N -0.891 5.891 15 Si 1.066 2.934 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.038 4.038 20 C -0.103 4.103 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.123 4.123 24 C -0.115 4.115 25 C -0.115 4.115 26 C 0.529 3.471 27 O -0.522 6.522 28 N -0.655 5.655 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.269 0.731 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 6.020 -2.733 9.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.123 4.123 4 C -0.018 4.018 5 C -0.107 4.107 6 C -0.158 4.158 7 C 0.105 3.895 8 O -0.224 6.224 9 C 0.170 3.830 10 H 0.064 0.936 11 C -0.643 4.643 12 H 0.083 0.917 13 C -0.173 4.173 14 N -0.526 5.526 15 Si 0.893 3.107 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.039 4.039 20 C -0.122 4.122 21 C -0.147 4.147 22 C -0.163 4.163 23 C -0.141 4.141 24 C -0.134 4.134 25 C -0.154 4.154 26 C 0.317 3.683 27 O -0.399 6.399 28 N -0.299 5.299 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.169 0.831 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.902 5.498 -1.961 7.622 hybrid contribution -1.218 0.934 -0.622 1.656 sum -6.120 6.432 -2.583 9.247 Atomic orbital electron populations 1.20537 0.90501 1.02376 1.02064 1.18873 0.96201 0.89745 1.06049 1.19815 0.89910 0.97432 1.05167 1.17882 0.90696 0.86744 1.06477 1.19497 0.94101 0.92441 1.04699 1.20708 0.93421 0.98198 1.03428 1.18556 0.89785 0.86364 0.94813 1.85956 1.37566 1.12593 1.86301 1.19262 0.88158 0.78135 0.97444 0.93558 1.22199 1.09448 1.41044 0.91592 0.91742 1.25877 0.92860 0.93450 1.05100 1.70915 1.38951 1.43717 0.99052 0.83558 0.76592 0.76868 0.73693 1.20399 1.20987 1.21048 1.20193 0.93795 0.97311 0.92580 1.20885 0.93796 0.97896 0.99581 1.21023 0.99276 0.96077 0.98336 1.20903 0.95673 0.99921 0.99837 1.20957 0.94236 0.98366 1.00564 1.20930 0.99599 0.95778 0.97075 1.21039 0.95240 0.92871 1.06292 1.20606 0.82002 0.91237 0.74454 1.90776 1.34988 1.63421 1.50700 1.43579 1.06441 1.08639 1.71221 0.91611 0.92309 0.90934 0.85852 0.83117 0.91839 0.86380 0.87090 0.87217 0.86955 0.86413 0.85919 0.86136 0.75591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 9.78 36.00 0.35 -0.95 16 2 C -0.11 -1.71 5.88 -104.56 -0.62 -2.32 16 3 C -0.10 -1.43 9.71 -39.29 -0.38 -1.81 16 4 C 0.08 1.15 7.11 -83.60 -0.59 0.55 16 5 C -0.10 -1.75 6.34 -104.37 -0.66 -2.41 16 6 C -0.14 -2.66 8.69 -39.57 -0.34 -3.01 16 7 C 0.15 2.92 6.57 -39.18 -0.26 2.66 16 8 O -0.31 -6.51 8.12 -19.63 -0.16 -6.67 16 9 C 0.22 5.04 1.67 -29.03 -0.05 5.00 16 10 H 0.05 1.09 4.61 -51.93 -0.24 0.85 16 11 C -0.61 -15.04 7.69 -34.44 -0.26 -15.30 16 12 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 13 C 0.03 0.85 5.44 -17.82 -0.10 0.75 16 14 N -0.89 -23.21 13.62 55.43 0.75 -22.45 16 15 Si 1.07 23.18 29.90 -169.99 -5.08 18.10 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 19 C -0.04 -0.81 4.96 -104.62 -0.52 -1.33 16 20 C -0.10 -2.02 9.36 -39.58 -0.37 -2.39 16 21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.57 16 22 C -0.15 -2.36 10.05 -39.58 -0.40 -2.75 16 23 C -0.12 -2.15 10.05 -39.58 -0.40 -2.54 16 24 C -0.12 -2.33 9.46 -39.58 -0.37 -2.70 16 25 C -0.12 -1.70 6.87 -28.48 -0.20 -1.89 16 26 C 0.53 8.04 8.71 -10.84 -0.09 7.94 16 27 O -0.52 -9.31 18.03 5.54 0.10 -9.21 16 28 N -0.66 -8.70 5.89 -9.66 -0.06 -8.76 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.07 1.04 7.52 -51.93 -0.39 0.65 16 32 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.15 3.27 5.69 -52.49 -0.30 2.97 16 34 H 0.27 6.84 5.12 -40.82 -0.21 6.63 16 35 H 0.12 2.26 7.75 -52.49 -0.41 1.85 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.12 2.41 6.82 -52.49 -0.36 2.05 16 40 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.41 4.29 8.96 -40.82 -0.37 3.93 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -28.44 354.29 -9.62 -38.06 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.85 Total: 10.68 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -5.66 Total: -25.08 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.70 Total: -31.21 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.06 Total: -15.88 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.08 Total: 18.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.44 -9.62 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225511266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.139 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds