Wall clock time and date at job start Tue Mar 31 2020 13:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37947 * 119.84487 * 2 1 4 4 C 1.39308 * 120.20581 * 180.33238 * 3 2 1 5 5 C 1.38930 * 119.04091 * 359.65887 * 4 3 2 6 6 C 1.37628 * 120.85530 * 0.02873 * 5 4 3 7 7 C 1.38702 * 119.84110 * 179.70888 * 2 1 3 8 8 O 1.35965 * 120.14595 * 359.97438 * 7 2 1 9 9 C 1.42898 * 117.00060 * 174.15699 * 8 7 2 10 10 H 1.08998 * 109.47672 * 324.50114 * 9 8 7 11 11 C 1.50704 * 109.46999 * 84.50150 * 9 8 7 12 12 H 1.08001 * 119.99609 * 29.51602 * 11 9 8 13 13 C 1.37871 * 120.00274 * 209.51930 * 11 9 8 14 14 N 1.31516 * 119.99971 * 1.78173 * 13 11 9 15 15 Si 1.86799 * 120.00377 * 181.78035 * 13 11 9 16 16 H 1.48501 * 109.47271 * 179.97438 * 15 13 11 17 17 H 1.48490 * 109.47241 * 300.00372 * 15 13 11 18 18 H 1.48505 * 109.46936 * 60.00132 * 15 13 11 19 19 C 1.50704 * 109.47140 * 204.49866 * 9 8 7 20 20 C 1.38232 * 119.99941 * 321.03483 * 19 9 8 21 21 C 1.38242 * 119.99697 * 179.80938 * 20 19 9 22 22 C 1.38238 * 119.99653 * 0.40017 * 21 20 19 23 23 C 1.38232 * 120.00541 * 359.85325 * 22 21 20 24 24 C 1.38235 * 119.99618 * 359.96095 * 23 22 21 25 25 C 1.51146 * 106.35238 * 180.02562 * 5 4 3 26 26 C 1.51377 * 104.10400 * 359.97438 * 25 5 4 27 27 O 1.21296 * 126.42998 * 180.02562 * 26 25 5 28 28 N 1.34363 * 107.13940 * 359.97438 * 26 25 5 29 29 H 1.09006 * 109.47346 * 270.29019 * 1 2 3 30 30 H 1.09006 * 109.47346 * 30.29179 * 1 2 3 31 31 H 1.09002 * 109.47217 * 150.28804 * 1 2 3 32 32 H 1.08004 * 119.89665 * 359.96369 * 3 2 1 33 33 H 1.08001 * 120.06180 * 179.97438 * 6 5 4 34 34 H 0.97009 * 120.00146 * 356.59737 * 14 13 11 35 35 H 1.07995 * 120.00165 * 0.02562 * 20 19 9 36 36 H 1.07998 * 120.00048 * 180.22903 * 21 20 19 37 37 H 1.08001 * 119.99431 * 179.83183 * 22 21 20 38 38 H 1.07996 * 120.00094 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.99885 * 179.97438 * 24 23 22 40 40 H 1.09001 * 110.49995 * 118.65450 * 25 5 4 41 41 H 1.08999 * 110.49988 * 241.33963 * 25 5 4 42 42 H 0.97000 * 123.89055 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.1965 0.0000 4 6 3.5865 1.2053 -0.0070 5 6 4.2686 -0.0050 -0.0067 6 6 3.5858 -1.2000 -0.0002 7 6 2.1971 -1.2031 0.0061 8 8 1.5170 -2.3804 0.0126 9 6 2.2893 -3.5764 -0.1110 10 1 3.1328 -3.3971 -0.7775 11 6 2.7998 -3.9871 1.2462 12 1 2.2338 -3.7423 2.1328 13 6 3.9895 -4.6753 1.3559 14 7 4.6962 -4.9427 0.2794 15 14 4.5976 -5.2279 3.0334 16 1 5.8903 -5.9427 2.8806 17 1 4.7875 -4.0419 3.9065 18 1 3.5982 -6.1392 3.6467 19 6 1.4267 -4.6751 -0.6767 20 6 0.1087 -4.7941 -0.2773 21 6 -0.6836 -5.7995 -0.7993 22 6 -0.1554 -6.6909 -1.7144 23 6 1.1641 -6.5751 -2.1099 24 6 1.9552 -5.5673 -1.5908 25 6 5.7410 0.3363 -0.0144 26 6 5.7688 1.8498 -0.0195 27 8 6.7578 2.5520 -0.0267 28 7 4.4923 2.2693 -0.0157 29 1 -0.3634 0.0052 1.0277 30 1 -0.3634 0.8874 -0.5184 31 1 -0.3634 -0.8926 -0.5094 32 1 1.6492 2.1294 -0.0006 33 1 4.1290 -2.1335 -0.0005 34 1 4.3570 -4.6995 -0.5963 35 1 -0.3030 -4.0995 0.4399 36 1 -1.7143 -5.8903 -0.4901 37 1 -0.7736 -7.4780 -2.1202 38 1 1.5768 -7.2717 -2.8245 39 1 2.9863 -5.4770 -1.8994 40 1 6.2275 -0.0519 0.8804 41 1 6.2193 -0.0571 -0.9114 42 1 4.2299 3.2031 -0.0181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225511266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:59 Heat of formation + Delta-G solvation = -36.452160 kcal Electronic energy + Delta-G solvation = -26770.534775 eV Core-core repulsion = 23065.742665 eV Total energy + Delta-G solvation = -3704.792109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.44639 -40.83842 -39.77726 -38.54405 -36.53722 -35.23210 -33.81125 -32.39006 -31.67521 -30.92717 -29.76149 -28.36014 -26.42351 -25.36707 -23.65259 -23.29898 -22.43836 -22.08565 -21.51770 -19.45524 -18.85179 -18.36025 -17.68753 -17.30108 -17.07547 -16.47829 -16.26696 -15.84213 -15.72601 -15.56536 -15.20135 -15.03886 -14.65308 -14.48457 -14.16076 -13.94344 -13.91394 -13.85218 -13.51937 -13.48747 -13.14703 -13.06442 -12.78778 -12.75001 -12.49800 -12.02815 -11.94210 -11.91621 -11.50237 -11.33879 -11.26557 -10.71710 -10.60436 -9.72436 -9.70453 -9.45050 -8.73122 -8.43835 -6.45779 0.21898 0.31694 0.58451 0.60863 1.38124 1.50402 1.54889 1.74666 1.99384 2.43989 2.58517 2.75198 3.00915 3.09532 3.15085 3.39740 3.85243 4.08304 4.09759 4.18076 4.21630 4.30286 4.36603 4.37433 4.39544 4.56405 4.61526 4.70502 4.81427 4.84263 4.90280 4.94268 5.08561 5.12225 5.19316 5.25449 5.33986 5.46992 5.63364 5.66196 5.70496 5.71551 5.77770 5.86212 5.91546 6.07752 6.23321 6.47069 6.72501 6.94053 7.31670 8.66249 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.004533 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.567218 B = 6175.580893 C = 7554.536200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.105 4.105 3 C -0.086 4.086 4 C 0.087 3.913 5 C -0.118 4.118 6 C -0.160 4.160 7 C 0.116 3.884 8 O -0.319 6.319 9 C 0.235 3.765 10 H 0.023 0.977 11 C -0.609 4.609 12 H 0.045 0.955 13 C -0.004 4.004 14 N -0.913 5.913 15 Si 1.101 2.899 16 H -0.280 1.280 17 H -0.274 1.274 18 H -0.275 1.275 19 C -0.068 4.068 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.135 4.135 23 C -0.124 4.124 24 C -0.138 4.138 25 C -0.117 4.117 26 C 0.535 3.465 27 O -0.547 6.547 28 N -0.637 5.637 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.170 0.830 33 H 0.115 0.885 34 H 0.263 0.737 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.140 0.860 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.924 6.942 -2.870 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.106 4.106 4 C -0.008 4.008 5 C -0.121 4.121 6 C -0.179 4.179 7 C 0.069 3.931 8 O -0.233 6.233 9 C 0.180 3.820 10 H 0.041 0.959 11 C -0.647 4.647 12 H 0.064 0.936 13 C -0.206 4.206 14 N -0.549 5.549 15 Si 0.924 3.076 16 H -0.205 1.205 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.069 4.069 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.157 4.157 25 C -0.156 4.156 26 C 0.324 3.676 27 O -0.425 6.425 28 N -0.281 5.281 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.187 0.813 33 H 0.133 0.867 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.158 0.842 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -7.264 6.454 -2.104 9.942 hybrid contribution -0.575 0.721 -0.649 1.128 sum -7.839 7.175 -2.753 10.978 Atomic orbital electron populations 1.20588 0.88403 1.03320 1.02861 1.19275 0.97790 0.88953 1.04627 1.20226 0.89472 0.98383 1.02515 1.17969 0.91301 0.86291 1.05275 1.19571 0.95308 0.92428 1.04804 1.20469 0.93787 0.97795 1.05866 1.19009 0.90120 0.86876 0.97113 1.85901 1.37420 1.12864 1.87146 1.18969 0.88101 0.79160 0.95796 0.95897 1.22270 1.09410 1.40773 0.92197 0.93649 1.26866 0.93242 0.93490 1.06995 1.70959 1.39486 1.45297 0.99205 0.83117 0.76275 0.77031 0.71225 1.20521 1.19913 1.20048 1.20209 0.94901 0.97449 0.94302 1.20971 0.93444 0.99183 1.00176 1.21428 1.00558 0.94644 0.97403 1.21393 0.95280 1.00088 0.98478 1.21313 0.94781 0.97624 1.00454 1.20969 0.99384 0.97206 0.98121 1.21091 0.94397 0.93074 1.07008 1.20477 0.82188 0.90964 0.74015 1.90772 1.35861 1.63836 1.52077 1.43366 1.05413 1.09243 1.70111 0.90804 0.88741 0.92571 0.81256 0.86732 0.92539 0.86954 0.83479 0.82940 0.84227 0.88272 0.85537 0.85184 0.73496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.34 9.78 71.23 0.70 -1.64 16 2 C -0.11 -3.23 5.88 -19.82 -0.12 -3.35 16 3 C -0.09 -2.14 9.71 22.46 0.22 -1.92 16 4 C 0.09 2.44 7.11 38.30 0.27 2.72 16 5 C -0.12 -4.02 6.34 -19.70 -0.12 -4.14 16 6 C -0.16 -6.56 8.69 22.28 0.19 -6.37 16 7 C 0.12 4.62 6.57 22.53 0.15 4.77 16 8 O -0.32 -14.23 8.12 -93.16 -0.76 -14.99 16 9 C 0.23 11.36 1.67 29.10 0.05 11.41 16 10 H 0.02 1.21 4.61 -2.39 -0.01 1.20 16 11 C -0.61 -32.18 7.69 25.60 0.20 -31.99 16 12 H 0.05 2.50 7.81 -2.91 -0.02 2.47 16 13 C 0.00 -0.21 5.44 84.65 0.46 0.25 16 14 N -0.91 -50.51 13.62 21.45 0.29 -50.22 16 15 Si 1.10 48.29 29.90 68.60 2.05 50.34 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 C -0.07 -3.04 4.96 -19.86 -0.10 -3.14 16 20 C -0.12 -4.71 9.36 22.27 0.21 -4.50 16 21 C -0.12 -3.86 10.05 22.27 0.22 -3.63 16 22 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 23 C -0.12 -4.17 10.05 22.27 0.22 -3.95 16 24 C -0.14 -5.81 9.46 22.27 0.21 -5.60 16 25 C -0.12 -3.48 6.87 29.46 0.20 -3.27 16 26 C 0.53 15.67 8.71 87.94 0.77 16.43 16 27 O -0.55 -18.97 18.03 -3.08 -0.06 -19.02 16 28 N -0.64 -15.42 5.89 -303.09 -1.79 -17.20 16 29 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.09 1.64 8.08 -2.38 -0.02 1.62 16 31 H 0.06 1.57 7.52 -2.39 -0.02 1.56 16 32 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.11 5.52 5.69 -2.91 -0.02 5.50 16 34 H 0.26 14.52 5.12 -92.70 -0.47 14.04 16 35 H 0.11 4.43 7.75 -2.91 -0.02 4.41 16 36 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 37 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 38 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.10 4.41 6.82 -2.91 -0.02 4.39 16 40 H 0.13 3.66 8.14 -2.39 -0.02 3.64 16 41 H 0.13 3.59 8.14 -2.39 -0.02 3.57 16 42 H 0.42 7.53 8.96 -92.71 -0.83 6.70 16 Total: -1.00 -66.06 354.29 4.23 -61.83 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.53 Total: 30.93 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 3.95 Total: -41.67 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -1.49 Total: -67.42 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.81 Total: -34.01 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.05 Total: 50.34 kcal Total: -66.06 4.23 -61.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225511266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.380 kcal (2) G-P(sol) polarization free energy of solvation -66.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds