Wall clock time and date at job start Tue Mar 31 2020 13:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37955 * 119.83973 * 2 1 4 4 C 1.39310 * 120.20048 * 180.02562 * 3 2 1 5 5 C 1.38930 * 119.04079 * 359.97438 * 4 3 2 6 6 C 1.37619 * 120.86044 * 359.97438 * 5 4 3 7 7 C 1.38698 * 119.84231 * 180.02562 * 2 1 3 8 8 O 1.35970 * 120.14613 * 0.02562 * 7 2 1 9 9 C 1.42900 * 117.00006 * 183.96718 * 8 7 2 10 10 H 1.09001 * 109.47255 * 39.20259 * 9 8 7 11 11 C 1.50701 * 109.46987 * 279.20190 * 9 8 7 12 12 H 1.08000 * 119.99953 * 125.50015 * 11 9 8 13 13 C 1.37869 * 120.00138 * 305.49692 * 11 9 8 14 14 N 1.31522 * 120.00228 * 9.44761 * 13 11 9 15 15 Si 1.86799 * 120.00233 * 189.44927 * 13 11 9 16 16 H 1.48495 * 109.47619 * 89.99849 * 15 13 11 17 17 H 1.48498 * 109.47539 * 210.00249 * 15 13 11 18 18 H 1.48505 * 109.46712 * 330.00045 * 15 13 11 19 19 C 1.50700 * 109.47004 * 159.20205 * 9 8 7 20 20 C 1.38234 * 119.99922 * 31.33219 * 19 9 8 21 21 C 1.38237 * 119.99802 * 179.78903 * 20 19 9 22 22 C 1.38234 * 120.00256 * 0.43909 * 21 20 19 23 23 C 1.38238 * 119.99410 * 359.81685 * 22 21 20 24 24 C 1.38231 * 119.99865 * 211.60647 * 19 9 8 25 25 C 1.51146 * 106.34831 * 179.97438 * 5 4 3 26 26 C 1.51376 * 104.10967 * 0.02562 * 25 5 4 27 27 O 1.21284 * 126.43729 * 180.02562 * 26 25 5 28 28 N 1.34368 * 107.13664 * 359.74377 * 26 25 5 29 29 H 1.08998 * 109.47002 * 90.00336 * 1 2 3 30 30 H 1.09000 * 109.46865 * 210.00203 * 1 2 3 31 31 H 1.08993 * 109.47216 * 329.99961 * 1 2 3 32 32 H 1.07999 * 119.89856 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.06393 * 180.02562 * 6 5 4 34 34 H 0.96999 * 119.99962 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.00217 * 359.97438 * 20 19 9 36 36 H 1.07997 * 119.99978 * 180.27691 * 21 20 19 37 37 H 1.07994 * 120.00271 * 179.83240 * 22 21 20 38 38 H 1.08005 * 119.99671 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.00366 * 359.97438 * 24 19 9 40 40 H 1.09004 * 110.50267 * 118.65738 * 25 5 4 41 41 H 1.08998 * 110.50408 * 241.34161 * 25 5 4 42 42 H 0.97000 * 123.89476 * 180.27189 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.1966 0.0000 4 6 3.5865 1.2054 -0.0005 5 6 4.2686 -0.0049 -0.0005 6 6 3.5859 -1.1999 0.0005 7 6 2.1972 -1.2031 -0.0005 8 8 1.5171 -2.3805 -0.0016 9 6 2.2925 -3.5776 0.0860 10 1 3.1177 -3.4260 0.7818 11 6 2.8400 -3.9222 -1.2751 12 1 3.9014 -4.0706 -1.4085 13 6 1.9859 -4.0480 -2.3501 14 7 0.7260 -3.6887 -2.2346 15 14 2.6181 -4.7290 -3.9706 16 1 2.4542 -6.2048 -3.9851 17 1 1.8471 -4.1343 -5.0919 18 1 4.0556 -4.3890 -4.1231 19 6 1.4218 -4.7052 0.5774 20 6 0.0750 -4.7244 0.2666 21 6 -0.7228 -5.7610 0.7137 22 6 -0.1757 -6.7736 1.4793 23 6 1.1701 -6.7515 1.7946 24 6 1.9688 -5.7172 1.3438 25 6 5.7410 0.3364 -0.0018 26 6 5.7689 1.8499 -0.0019 27 8 6.7578 2.5522 -0.0032 28 7 4.4924 2.2695 -0.0065 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 1.6492 2.1295 0.0004 33 1 4.1291 -2.1333 0.0009 34 1 0.1252 -3.7769 -2.9910 35 1 -0.3533 -3.9312 -0.3281 36 1 -1.7741 -5.7784 0.4671 37 1 -0.7995 -7.5820 1.8309 38 1 1.5977 -7.5429 2.3924 39 1 3.0202 -5.7001 1.5901 40 1 6.2242 -0.0539 0.8939 41 1 6.2228 -0.0547 -0.8979 42 1 4.2299 3.2033 -0.0113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225511267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:02 Heat of formation + Delta-G solvation = -25.296540 kcal Electronic energy + Delta-G solvation = -26922.001186 eV Core-core repulsion = 23217.692820 eV Total energy + Delta-G solvation = -3704.308365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.29566 -40.54142 -39.56625 -38.32318 -36.33858 -34.61318 -33.69512 -32.36502 -31.39352 -30.79748 -29.54740 -28.74503 -26.31206 -25.14024 -23.42804 -23.07405 -22.28400 -21.88225 -21.31429 -19.06881 -18.70499 -17.77308 -17.45422 -17.16782 -16.95276 -16.70268 -16.22752 -15.68127 -15.55932 -15.36289 -15.05617 -14.86136 -14.50496 -14.14313 -13.93173 -13.80335 -13.73445 -13.55880 -13.38405 -13.29200 -13.07609 -12.97649 -12.83948 -12.65051 -12.44602 -12.17701 -11.80812 -11.72164 -11.39036 -11.30429 -11.00559 -10.74328 -10.47200 -9.55543 -9.49174 -9.22886 -8.28743 -8.01597 -6.29831 0.40265 0.48596 0.76960 0.89529 1.38096 1.42628 1.47391 1.51020 2.11199 2.39255 2.83519 2.94953 3.18180 3.27713 3.29242 3.51974 3.99938 4.25010 4.29882 4.34477 4.36559 4.49287 4.49633 4.53602 4.60279 4.75103 4.77564 4.84933 4.98021 5.01198 5.05539 5.12796 5.22998 5.25000 5.39370 5.47572 5.56331 5.62261 5.68476 5.81422 5.85208 5.87572 5.98383 6.04017 6.10198 6.26720 6.47195 6.63678 7.02617 7.17876 7.46272 8.87887 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.004190 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.401743 B = 6680.762924 C = 7220.308814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.120 4.120 3 C -0.087 4.087 4 C 0.068 3.932 5 C -0.112 4.112 6 C -0.164 4.164 7 C 0.135 3.865 8 O -0.292 6.292 9 C 0.242 3.758 10 H 0.033 0.967 11 C -0.564 4.564 12 H 0.058 0.942 13 C 0.055 3.945 14 N -0.850 5.850 15 Si 0.932 3.068 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.061 4.061 20 C -0.091 4.091 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.134 4.134 24 C -0.139 4.139 25 C -0.111 4.111 26 C 0.529 3.471 27 O -0.554 6.554 28 N -0.640 5.640 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.127 0.873 34 H 0.260 0.740 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 3.791 6.304 7.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.108 4.108 4 C -0.027 4.027 5 C -0.115 4.115 6 C -0.184 4.184 7 C 0.087 3.913 8 O -0.204 6.204 9 C 0.188 3.812 10 H 0.050 0.950 11 C -0.601 4.601 12 H 0.076 0.924 13 C -0.152 4.152 14 N -0.484 5.484 15 Si 0.758 3.242 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.062 4.062 20 C -0.110 4.110 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.149 4.149 26 C 0.318 3.682 27 O -0.433 6.433 28 N -0.284 5.284 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.174 0.826 33 H 0.145 0.855 34 H 0.070 0.930 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.138 0.862 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -0.606 4.053 6.196 7.429 hybrid contribution 0.390 -0.232 -1.400 1.471 sum -0.215 3.821 4.797 6.136 Atomic orbital electron populations 1.20442 0.89541 1.02559 1.01869 1.19191 0.97235 0.89739 1.05988 1.20115 0.89888 0.97988 1.02786 1.17900 0.91033 0.86692 1.07062 1.19609 0.95193 0.92333 1.04323 1.20398 0.93273 0.97691 1.07008 1.19088 0.90491 0.87499 0.94262 1.86210 1.36705 1.11974 1.85551 1.18853 0.87955 0.79784 0.94602 0.94964 1.21448 0.93700 1.51405 0.93516 0.92380 1.25409 0.95092 0.93995 1.00718 1.70071 1.04552 1.42645 1.31099 0.85981 0.78718 0.78669 0.80799 1.20598 1.21170 1.19667 1.20025 0.94489 0.96927 0.94756 1.21423 0.93832 0.99085 0.96620 1.21401 1.00079 0.95520 0.99710 1.21287 0.95712 0.99117 0.99798 1.21221 0.94147 0.98523 1.01332 1.21028 1.00031 0.95421 0.99239 1.21073 0.94147 0.92391 1.07317 1.20654 0.81972 0.91490 0.74047 1.90761 1.35918 1.64076 1.52531 1.43424 1.05695 1.09161 1.70135 0.92305 0.92855 0.89484 0.82591 0.85474 0.93013 0.85546 0.85827 0.84199 0.83996 0.86163 0.84410 0.85170 0.74029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.68 9.78 71.24 0.70 -1.98 16 2 C -0.12 -4.10 5.88 -19.82 -0.12 -4.21 16 3 C -0.09 -2.43 9.71 22.46 0.22 -2.21 16 4 C 0.07 1.95 7.11 38.30 0.27 2.23 16 5 C -0.11 -3.53 6.34 -19.70 -0.12 -3.66 16 6 C -0.16 -6.17 8.62 22.28 0.19 -5.98 16 7 C 0.14 5.47 6.53 22.53 0.15 5.62 16 8 O -0.29 -13.36 6.74 -93.21 -0.63 -13.99 16 9 C 0.24 11.10 2.12 29.10 0.06 11.16 16 10 H 0.03 1.42 6.45 -2.39 -0.02 1.40 16 11 C -0.56 -27.97 7.63 25.60 0.20 -27.78 16 12 H 0.06 2.88 7.83 -2.91 -0.02 2.86 16 13 C 0.05 2.75 5.21 84.65 0.44 3.19 16 14 N -0.85 -43.51 9.42 21.45 0.20 -43.31 16 15 Si 0.93 41.16 29.55 68.60 2.03 43.19 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 17 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C -0.06 -2.70 4.84 -19.87 -0.10 -2.80 16 20 C -0.09 -3.99 8.12 22.27 0.18 -3.81 16 21 C -0.15 -5.48 10.05 22.27 0.22 -5.26 16 22 C -0.14 -4.51 10.05 22.27 0.22 -4.28 16 23 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 24 C -0.14 -5.27 9.70 22.27 0.22 -5.06 16 25 C -0.11 -2.88 6.87 29.46 0.20 -2.67 16 26 C 0.53 14.90 8.71 87.94 0.77 15.66 16 27 O -0.55 -18.69 18.03 -3.04 -0.05 -18.74 16 28 N -0.64 -15.81 5.89 -303.09 -1.79 -17.60 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.84 7.52 -2.39 -0.02 1.82 16 31 H 0.09 1.99 8.08 -2.39 -0.02 1.98 16 32 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.13 4.99 5.64 -2.91 -0.02 4.98 16 34 H 0.26 12.97 8.31 -92.71 -0.77 12.20 16 35 H 0.13 6.15 5.85 -2.91 -0.02 6.13 16 36 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 39 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 40 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.42 8.06 8.96 -92.71 -0.83 7.23 16 Total: -1.00 -60.33 351.62 3.92 -56.42 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.23 Total: 29.99 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 3.92 Total: -35.95 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -1.58 Total: -60.91 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.68 Total: -32.73 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -60.33 3.92 -56.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225511267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.119 kcal (2) G-P(sol) polarization free energy of solvation -60.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds