Wall clock time and date at job start Tue Mar 31 2020 14:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34728 * 116.99736 * 2 1 4 4 O 1.21490 * 120.00116 * 0.02562 * 3 2 1 5 5 C 1.47574 * 120.00139 * 180.02562 * 3 2 1 6 6 C 1.39692 * 120.14217 * 0.23632 * 5 3 2 7 7 C 1.38321 * 119.81234 * 180.25288 * 6 5 3 8 8 O 1.35956 * 119.94389 * 179.72601 * 7 6 5 9 9 C 1.42893 * 116.99974 * 6.20345 * 8 7 6 10 10 C 1.53934 * 113.73398 * 255.84853 * 9 8 7 11 11 N 1.48186 * 86.10551 * 221.95996 * 10 9 8 12 12 C 1.46903 * 111.07057 * 137.51941 * 11 10 9 13 13 C 1.50693 * 109.46929 * 70.57149 * 12 11 10 14 14 H 1.07998 * 120.00322 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99697 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00186 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46581 * 60.00384 * 17 15 13 19 19 H 1.48497 * 109.47233 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47337 * 300.00611 * 17 15 13 21 21 C 1.47958 * 90.79536 * 24.60130 * 11 10 9 22 22 C 1.38910 * 120.10818 * 359.73702 * 7 6 5 23 23 C 1.50702 * 119.84905 * 180.02562 * 22 7 6 24 24 C 1.38154 * 120.30094 * 0.03345 * 22 7 6 25 25 C 1.38315 * 120.18270 * 359.96654 * 24 22 7 26 26 F 1.35096 * 120.05499 * 179.97438 * 25 24 22 27 27 H 1.09002 * 109.46877 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47083 * 299.99506 * 1 2 3 29 29 H 1.09000 * 109.47836 * 59.99798 * 1 2 3 30 30 H 1.08003 * 120.09486 * 359.97438 * 6 5 3 31 31 H 1.08990 * 112.94290 * 27.41953 * 9 8 7 32 32 H 1.09001 * 113.76392 * 336.24453 * 10 9 8 33 33 H 1.09001 * 113.75627 * 107.60468 * 10 9 8 34 34 H 1.09004 * 109.46523 * 190.56593 * 12 11 10 35 35 H 1.08995 * 109.47278 * 310.56910 * 12 11 10 36 36 H 0.97002 * 119.99666 * 179.97438 * 16 15 13 37 37 H 1.09009 * 113.75926 * 221.08123 * 21 11 10 38 38 H 1.08997 * 113.76031 * 89.72088 * 21 11 10 39 39 H 1.08997 * 109.47367 * 270.02629 * 23 22 7 40 40 H 1.09001 * 109.47144 * 30.02721 * 23 22 7 41 41 H 1.09001 * 109.47166 * 150.02816 * 23 22 7 42 42 H 1.07994 * 119.90987 * 179.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5373 1.2778 -0.0006 6 6 4.3011 0.1082 -0.0061 7 6 5.6820 0.1886 -0.0013 8 8 6.4280 -0.9480 -0.0010 9 6 5.7262 -2.1846 -0.1434 10 6 5.5923 -2.9758 1.1703 11 7 5.9060 -4.1768 0.3609 12 6 6.8465 -5.0579 1.0660 13 6 6.1484 -5.7059 2.2338 14 1 5.1102 -5.4849 2.4327 15 6 6.8353 -6.5808 3.0486 16 7 8.0998 -6.8495 2.8067 17 14 5.9703 -7.3835 4.4966 18 1 4.8180 -8.1808 4.0047 19 1 6.9209 -8.2743 5.2093 20 1 5.4843 -6.3332 5.4271 21 6 6.6085 -3.3440 -0.6401 22 6 6.3078 1.4288 0.0035 23 6 7.8126 1.5096 0.0081 24 6 5.5569 2.5884 0.0041 25 6 4.1753 2.5223 -0.0006 26 9 3.4436 3.6579 0.0006 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 3.8149 -0.8562 -0.0095 31 1 4.7892 -2.0808 -0.6904 32 1 6.3556 -2.7325 1.9093 33 1 4.5834 -2.9741 1.5829 34 1 7.2038 -5.8287 0.3831 35 1 7.6918 -4.4723 1.4274 36 1 8.5831 -7.4647 3.3801 37 1 6.4102 -3.6362 -1.6715 38 1 7.6698 -3.2087 -0.4319 39 1 8.1725 1.5262 1.0368 40 1 8.2247 0.6418 -0.5070 41 1 8.1292 2.4192 -0.5022 42 1 6.0499 3.5492 0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230035615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:43 Heat of formation + Delta-G solvation = -101.190964 kcal Electronic energy + Delta-G solvation = -27012.643793 eV Core-core repulsion = 22874.275174 eV Total energy + Delta-G solvation = -4138.368619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.03420 -40.92463 -40.26936 -38.89585 -36.83177 -36.45586 -33.40238 -32.89329 -30.16447 -29.19842 -28.66393 -27.12897 -25.91315 -25.30335 -23.45456 -23.08525 -21.47856 -21.07839 -19.52985 -18.77557 -17.70254 -17.33497 -16.70352 -16.67811 -16.52673 -16.25705 -15.77528 -15.45484 -15.01303 -14.74756 -14.42772 -14.24395 -13.81825 -13.68768 -13.62450 -13.50432 -13.04274 -12.95510 -12.47631 -12.25939 -12.20930 -12.13854 -11.99476 -11.80236 -11.61398 -11.38691 -11.02784 -10.95531 -10.75489 -10.66876 -10.34915 -10.23357 -9.79173 -9.36971 -9.26121 -8.56285 -8.26409 -7.96877 -6.11352 -4.13861 0.23905 0.90414 2.23060 2.37974 3.06922 3.27367 3.28958 3.33213 3.36074 3.88543 4.18761 4.34889 4.36006 4.58156 4.64478 4.70429 4.75116 4.89316 4.96911 5.04714 5.08923 5.24917 5.26444 5.29100 5.37049 5.47980 5.58043 5.66572 5.69338 5.90303 5.92589 5.99683 6.04847 6.08122 6.22415 6.29189 6.39345 6.50844 7.10120 7.30795 7.46901 7.52770 7.76837 7.99467 8.31019 8.92693 9.51023 10.99805 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.003122 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.558921 B = 8965.332768 C =10267.727282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.350 6.350 3 C 0.509 3.491 4 O -0.495 6.495 5 C -0.133 4.133 6 C -0.123 4.123 7 C 0.118 3.882 8 O -0.294 6.294 9 C 0.038 3.962 10 C 0.007 3.993 11 N -0.472 5.472 12 C 0.164 3.836 13 C -0.514 4.514 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.010 3.990 22 C -0.053 4.053 23 C -0.113 4.113 24 C -0.133 4.133 25 C 0.126 3.874 26 F -0.119 7.119 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.157 0.843 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.002 0.998 36 H 0.263 0.737 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 17.918 -7.682 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.267 6.267 3 C 0.354 3.646 4 O -0.383 6.383 5 C -0.135 4.135 6 C -0.142 4.142 7 C 0.072 3.928 8 O -0.206 6.206 9 C -0.018 4.018 10 C -0.122 4.122 11 N -0.197 5.197 12 C 0.038 3.962 13 C -0.553 4.553 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.119 4.119 22 C -0.054 4.054 23 C -0.169 4.169 24 C -0.152 4.152 25 C 0.106 3.894 26 F -0.097 7.097 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.175 0.825 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.864 17.638 -7.791 20.468 hybrid contribution -0.279 0.027 1.164 1.198 sum -7.143 17.665 -6.627 20.174 Atomic orbital electron populations 1.23328 0.75528 1.04121 1.02629 1.86565 1.23866 1.32064 1.84174 1.20866 0.88580 0.81844 0.73320 1.90890 1.66529 1.35790 1.45134 1.18844 0.89936 0.93106 1.11586 1.21528 0.92728 0.98934 1.01041 1.18742 0.89389 0.87468 0.97224 1.86260 1.35438 1.12517 1.86417 1.25094 0.97037 0.79758 0.99925 1.24290 1.02902 0.90257 0.94708 1.68650 1.33782 1.08585 1.08713 1.20216 0.90117 0.92075 0.93805 1.21029 0.97689 1.25912 1.10654 0.91979 1.24982 0.94866 0.96553 0.97999 1.69939 1.08806 1.35732 1.39102 0.86539 0.79305 0.79295 0.82177 1.20076 1.21249 1.20208 1.24154 0.98005 0.90159 0.99603 1.19401 0.97468 0.89323 0.99198 1.20760 0.89205 1.03555 1.03376 1.20790 0.90770 0.99530 1.04070 1.17451 0.89080 0.80925 1.01968 1.91575 1.77141 1.47757 1.93260 0.87587 0.91702 0.91772 0.82524 0.87853 0.90242 0.89703 0.94666 0.98023 0.92719 0.89256 0.90627 0.90188 0.90014 0.91056 0.83156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.18 9.82 -40.57 -0.40 -4.57 16 3 C 0.51 6.90 7.89 34.54 0.27 7.17 16 4 O -0.49 -7.71 15.12 -19.26 -0.29 -8.00 16 5 C -0.13 -1.69 5.88 -104.94 -0.62 -2.30 16 6 C -0.12 -1.50 8.57 -39.01 -0.33 -1.83 16 7 C 0.12 1.45 6.64 -39.30 -0.26 1.19 16 8 O -0.29 -4.03 9.18 -19.60 -0.18 -4.21 16 9 C 0.04 0.55 3.77 -25.80 -0.10 0.45 16 10 C 0.01 0.13 7.32 -2.64 -0.02 0.11 16 11 N -0.47 -9.62 6.25 -239.74 -1.50 -11.12 16 12 C 0.16 4.11 4.58 -4.98 -0.02 4.09 16 13 C -0.51 -14.12 8.84 -34.44 -0.30 -14.42 16 14 H 0.06 1.69 7.80 -52.49 -0.41 1.28 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.10 13.29 55.43 0.74 -25.37 16 17 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.01 0.16 7.81 -2.76 -0.02 0.14 16 22 C -0.05 -0.56 5.90 -104.40 -0.62 -1.17 16 23 C -0.11 -0.96 9.78 36.01 0.35 -0.60 16 24 C -0.13 -1.31 9.65 -39.58 -0.38 -1.69 16 25 C 0.13 1.53 7.28 -38.95 -0.28 1.25 16 26 F -0.12 -1.61 15.54 2.25 0.04 -1.58 16 27 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.16 1.82 5.51 -52.48 -0.29 1.53 16 31 H 0.10 1.31 6.10 -51.93 -0.32 0.99 16 32 H 0.08 1.54 7.79 -51.93 -0.40 1.13 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.00 0.05 7.70 -51.93 -0.40 -0.35 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.08 1.27 7.79 -51.93 -0.40 0.86 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.76 7.52 -51.93 -0.39 0.37 16 41 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 42 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -31.67 361.64 -8.08 -39.75 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.55 Total: -1.85 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.36 Total: -4.72 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.76 Total: -36.48 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.87 Total: -16.79 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.67 -8.08 -39.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230035615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.439 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds