Wall clock time and date at job start Tue Mar 31 2020 14:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34728 * 116.99736 * 2 1 4 4 O 1.21490 * 120.00116 * 0.02562 * 3 2 1 5 5 C 1.47574 * 120.00139 * 180.02562 * 3 2 1 6 6 C 1.39692 * 120.14217 * 0.23632 * 5 3 2 7 7 C 1.38321 * 119.81234 * 180.25288 * 6 5 3 8 8 O 1.35956 * 119.94389 * 179.72601 * 7 6 5 9 9 C 1.42893 * 116.99974 * 6.20345 * 8 7 6 10 10 C 1.53934 * 113.73398 * 255.84853 * 9 8 7 11 11 N 1.48186 * 86.10551 * 221.95996 * 10 9 8 12 12 C 1.46903 * 111.07057 * 137.51941 * 11 10 9 13 13 C 1.50693 * 109.46929 * 70.57149 * 12 11 10 14 14 H 1.07998 * 120.00322 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99697 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00186 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46581 * 60.00384 * 17 15 13 19 19 H 1.48497 * 109.47233 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47337 * 300.00611 * 17 15 13 21 21 C 1.47958 * 90.79536 * 24.60130 * 11 10 9 22 22 C 1.38910 * 120.10818 * 359.73702 * 7 6 5 23 23 C 1.50702 * 119.84905 * 180.02562 * 22 7 6 24 24 C 1.38154 * 120.30094 * 0.03345 * 22 7 6 25 25 C 1.38315 * 120.18270 * 359.96654 * 24 22 7 26 26 F 1.35096 * 120.05499 * 179.97438 * 25 24 22 27 27 H 1.09002 * 109.46877 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47083 * 299.99506 * 1 2 3 29 29 H 1.09000 * 109.47836 * 59.99798 * 1 2 3 30 30 H 1.08003 * 120.09486 * 359.97438 * 6 5 3 31 31 H 1.08990 * 112.94290 * 27.41953 * 9 8 7 32 32 H 1.09001 * 113.76392 * 336.24453 * 10 9 8 33 33 H 1.09001 * 113.75627 * 107.60468 * 10 9 8 34 34 H 1.09004 * 109.46523 * 190.56593 * 12 11 10 35 35 H 1.08995 * 109.47278 * 310.56910 * 12 11 10 36 36 H 0.97002 * 119.99666 * 179.97438 * 16 15 13 37 37 H 1.09009 * 113.75926 * 221.08123 * 21 11 10 38 38 H 1.08997 * 113.76031 * 89.72088 * 21 11 10 39 39 H 1.08997 * 109.47367 * 270.02629 * 23 22 7 40 40 H 1.09001 * 109.47144 * 30.02721 * 23 22 7 41 41 H 1.09001 * 109.47166 * 150.02816 * 23 22 7 42 42 H 1.07994 * 119.90987 * 179.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5373 1.2778 -0.0006 6 6 4.3011 0.1082 -0.0061 7 6 5.6820 0.1886 -0.0013 8 8 6.4280 -0.9480 -0.0010 9 6 5.7262 -2.1846 -0.1434 10 6 5.5923 -2.9758 1.1703 11 7 5.9060 -4.1768 0.3609 12 6 6.8465 -5.0579 1.0660 13 6 6.1484 -5.7059 2.2338 14 1 5.1102 -5.4849 2.4327 15 6 6.8353 -6.5808 3.0486 16 7 8.0998 -6.8495 2.8067 17 14 5.9703 -7.3835 4.4966 18 1 4.8180 -8.1808 4.0047 19 1 6.9209 -8.2743 5.2093 20 1 5.4843 -6.3332 5.4271 21 6 6.6085 -3.3440 -0.6401 22 6 6.3078 1.4288 0.0035 23 6 7.8126 1.5096 0.0081 24 6 5.5569 2.5884 0.0041 25 6 4.1753 2.5223 -0.0006 26 9 3.4436 3.6579 0.0006 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 3.8149 -0.8562 -0.0095 31 1 4.7892 -2.0808 -0.6904 32 1 6.3556 -2.7325 1.9093 33 1 4.5834 -2.9741 1.5829 34 1 7.2038 -5.8287 0.3831 35 1 7.6918 -4.4723 1.4274 36 1 8.5831 -7.4647 3.3801 37 1 6.4102 -3.6362 -1.6715 38 1 7.6698 -3.2087 -0.4319 39 1 8.1725 1.5262 1.0368 40 1 8.2247 0.6418 -0.5070 41 1 8.1292 2.4192 -0.5022 42 1 6.0499 3.5492 0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230035615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:42 Heat of formation + Delta-G solvation = -121.404011 kcal Electronic energy + Delta-G solvation = -27013.520297 eV Core-core repulsion = 22874.275174 eV Total energy + Delta-G solvation = -4139.245123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.01802 -41.95015 -41.35512 -40.10538 -37.91205 -37.49890 -35.00091 -34.22338 -31.39281 -30.65560 -29.49674 -27.89150 -27.49575 -26.84961 -24.72348 -24.01104 -22.94225 -22.10286 -20.87697 -19.76556 -18.81892 -18.50751 -18.28904 -17.65894 -17.62689 -17.32445 -16.93024 -16.68642 -16.40915 -16.13288 -15.62864 -15.45667 -15.02298 -14.77517 -14.49119 -14.40377 -14.26182 -13.97565 -13.84213 -13.67661 -13.61157 -13.22447 -13.03223 -12.85509 -12.81271 -12.63875 -12.53729 -12.48982 -12.17767 -11.89533 -11.69472 -11.52468 -11.48069 -11.18537 -10.64787 -10.21299 -9.67729 -9.23709 -8.23996 -6.34444 -0.68631 0.00457 1.25758 1.40958 1.43481 1.51288 1.51530 1.98689 2.35495 2.39333 2.97538 3.09306 3.16534 3.30449 3.39567 3.50424 3.77798 3.82067 3.92456 4.12363 4.24112 4.29709 4.41412 4.48556 4.53574 4.57319 4.65933 4.66836 4.72994 4.74269 4.80669 4.84691 4.88343 4.93809 5.10436 5.14131 5.20414 5.28379 5.49735 5.52624 5.74868 6.06702 6.24774 6.34392 6.49362 6.79937 7.35519 8.87522 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.003122 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.558921 B = 8965.332768 C =10267.727282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.509 3.491 4 O -0.524 6.524 5 C -0.148 4.148 6 C -0.120 4.120 7 C 0.101 3.899 8 O -0.299 6.299 9 C 0.066 3.934 10 C 0.001 3.999 11 N -0.486 5.486 12 C 0.179 3.821 13 C -0.531 4.531 14 H 0.062 0.938 15 C 0.005 3.995 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.268 1.268 21 C 0.008 3.992 22 C -0.045 4.045 23 C -0.113 4.113 24 C -0.118 4.118 25 C 0.116 3.884 26 F -0.129 7.129 27 H 0.133 0.867 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.160 0.840 31 H 0.129 0.871 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.007 0.993 35 H -0.023 1.023 36 H 0.266 0.734 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 18.907 -7.762 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.355 3.645 4 O -0.415 6.415 5 C -0.150 4.150 6 C -0.139 4.139 7 C 0.055 3.945 8 O -0.212 6.212 9 C 0.010 3.990 10 C -0.128 4.128 11 N -0.210 5.210 12 C 0.052 3.948 13 C -0.569 4.569 14 H 0.080 0.920 15 C -0.194 4.194 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.121 4.121 22 C -0.046 4.046 23 C -0.169 4.169 24 C -0.137 4.137 25 C 0.096 3.904 26 F -0.108 7.108 27 H 0.152 0.848 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.177 0.823 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.025 0.975 35 H -0.005 1.005 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.455 18.633 -7.884 21.562 hybrid contribution -0.098 -0.205 1.147 1.170 sum -7.554 18.427 -6.737 21.024 Atomic orbital electron populations 1.23635 0.73834 1.06033 1.02870 1.86557 1.25615 1.31251 1.83680 1.21067 0.88966 0.81883 0.72599 1.90867 1.67158 1.36663 1.46763 1.18920 0.89693 0.93661 1.12717 1.21483 0.92650 0.98869 1.00872 1.18943 0.89499 0.87511 0.98523 1.86239 1.35493 1.12586 1.86858 1.24693 0.97310 0.79782 0.97245 1.24298 1.02534 0.90084 0.95854 1.68520 1.33044 1.09809 1.09656 1.19853 0.90088 0.91879 0.92987 1.21381 0.97817 1.26197 1.11541 0.92007 1.25889 0.95522 0.97102 1.00863 1.70063 1.10319 1.36457 1.40368 0.85462 0.78270 0.78424 0.78657 1.19260 1.20764 1.19267 1.24224 0.97721 0.90303 0.99810 1.19688 0.98651 0.88677 0.97601 1.20842 0.87532 1.04589 1.03948 1.21075 0.89656 1.00704 1.02240 1.17751 0.89975 0.80442 1.02244 1.91550 1.77599 1.48223 1.93392 0.84846 0.91690 0.91392 0.82256 0.85369 0.92321 0.88897 0.97456 1.00519 0.92555 0.86791 0.91440 0.89671 0.90932 0.88273 0.79930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.66 16 2 O -0.35 -8.13 9.82 -56.38 -0.55 -8.68 16 3 C 0.51 13.54 7.89 70.29 0.55 14.09 16 4 O -0.52 -16.28 15.12 19.87 0.30 -15.98 16 5 C -0.15 -3.62 5.88 -20.07 -0.12 -3.73 16 6 C -0.12 -2.73 8.57 22.64 0.19 -2.54 16 7 C 0.10 2.30 6.64 22.45 0.15 2.45 16 8 O -0.30 -7.79 9.18 -93.05 -0.85 -8.64 16 9 C 0.07 1.82 3.77 31.24 0.12 1.94 16 10 C 0.00 0.05 7.32 86.37 0.63 0.68 16 11 N -0.49 -19.88 6.25 -915.61 -5.72 -25.61 16 12 C 0.18 9.28 4.58 85.55 0.39 9.67 16 13 C -0.53 -29.62 8.84 25.60 0.23 -29.40 16 14 H 0.06 3.37 7.80 -2.91 -0.02 3.35 16 15 C 0.00 0.27 5.46 84.66 0.46 0.73 16 16 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 17 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 C 0.01 0.26 7.81 86.41 0.67 0.93 16 22 C -0.05 -0.84 5.90 -19.72 -0.12 -0.95 16 23 C -0.11 -1.60 9.78 71.24 0.70 -0.91 16 24 C -0.12 -2.01 9.65 22.27 0.21 -1.80 16 25 C 0.12 2.65 7.28 22.68 0.17 2.82 16 26 F -0.13 -3.38 15.54 44.97 0.70 -2.68 16 27 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.16 3.45 5.51 -2.91 -0.02 3.44 16 31 H 0.13 2.94 6.10 -2.39 -0.01 2.93 16 32 H 0.06 2.32 7.79 -2.39 -0.02 2.30 16 33 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H -0.02 -1.28 7.70 -2.39 -0.02 -1.29 16 36 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 38 H 0.07 2.28 7.79 -2.39 -0.02 2.26 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.20 7.52 -2.39 -0.02 1.18 16 41 H 0.10 0.87 8.08 -2.39 -0.02 0.85 16 42 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -69.58 361.64 2.67 -66.91 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.04 Total: 8.46 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.44 Total: -4.35 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -5.44 Total: -80.59 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.11 Total: -33.31 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.70 Total: -2.68 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -69.58 2.67 -66.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230035615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.492 kcal (2) G-P(sol) polarization free energy of solvation -69.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds