Wall clock time and date at job start Tue Mar 31 2020 14:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34735 * 117.00125 * 2 1 4 4 O 1.21491 * 119.99689 * 359.97438 * 3 2 1 5 5 C 1.47574 * 119.99982 * 180.02562 * 3 2 1 6 6 C 1.39687 * 120.14739 * 0.28964 * 5 3 2 7 7 C 1.38320 * 119.81543 * 180.26951 * 6 5 3 8 8 O 1.35951 * 119.94929 * 179.70604 * 7 6 5 9 9 C 1.42902 * 116.99917 * 354.99244 * 8 7 6 10 10 H 1.09004 * 110.88174 * 327.67059 * 9 8 7 11 11 C 1.55154 * 111.00278 * 203.79125 * 9 8 7 12 12 C 1.54325 * 102.93989 * 206.38401 * 11 9 8 13 13 N 1.47025 * 107.27154 * 22.19258 * 12 11 9 14 14 C 1.36940 * 125.64942 * 181.02359 * 13 12 11 15 15 H 1.07993 * 120.00220 * 173.47255 * 14 13 12 16 16 C 1.38811 * 119.99845 * 353.48104 * 14 13 12 17 17 N 1.31620 * 120.00192 * 167.40254 * 16 14 13 18 18 Si 1.86802 * 119.99841 * 347.39466 * 16 14 13 19 19 H 1.48504 * 109.46756 * 186.08663 * 18 16 14 20 20 H 1.48493 * 109.47230 * 306.08676 * 18 16 14 21 21 H 1.48501 * 109.46942 * 66.09100 * 18 16 14 22 22 C 1.47423 * 108.70557 * 1.28433 * 13 12 11 23 23 C 1.38918 * 120.10390 * 359.43383 * 7 6 5 24 24 C 1.50703 * 119.84608 * 180.24951 * 23 7 6 25 25 C 1.38147 * 120.30415 * 0.27695 * 23 7 6 26 26 C 1.38310 * 120.17878 * 0.02562 * 25 23 7 27 27 F 1.35107 * 120.05364 * 179.97438 * 26 25 23 28 28 H 1.09002 * 109.47362 * 60.00497 * 1 2 3 29 29 H 1.09002 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47231 * 300.00469 * 1 2 3 31 31 H 1.07999 * 120.09265 * 359.97438 * 6 5 3 32 32 H 1.08995 * 110.72234 * 88.02245 * 11 9 8 33 33 H 1.09001 * 110.87041 * 324.81429 * 11 9 8 34 34 H 1.09000 * 109.88170 * 262.77571 * 12 11 9 35 35 H 1.09000 * 110.01197 * 141.68017 * 12 11 9 36 36 H 0.96996 * 120.00003 * 5.06916 * 17 16 14 37 37 H 1.09001 * 110.36336 * 94.48290 * 22 13 12 38 38 H 1.08994 * 110.36974 * 216.80797 * 22 13 12 39 39 H 1.09003 * 109.47159 * 90.00095 * 24 23 7 40 40 H 1.09001 * 109.46900 * 210.00183 * 24 23 7 41 41 H 1.08997 * 109.47269 * 330.00202 * 24 23 7 42 42 H 1.07990 * 119.91409 * 179.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4019 2.2194 -0.0005 5 6 3.5374 1.2777 -0.0006 6 6 4.3011 0.1081 -0.0072 7 6 5.6820 0.1885 -0.0021 8 8 6.4280 -0.9481 -0.0025 9 6 5.7231 -2.1868 0.1028 10 1 4.8231 -2.0715 0.7068 11 6 6.6387 -3.3006 0.6759 12 6 6.0169 -4.5899 0.0991 13 7 5.2475 -4.2075 -1.0940 14 6 4.5252 -5.0606 -1.8851 15 1 3.9077 -4.6680 -2.6794 16 6 4.5867 -6.4299 -1.6660 17 7 3.7181 -7.2292 -2.2483 18 14 5.9023 -7.1383 -0.5449 19 1 5.8472 -8.6215 -0.5927 20 1 7.2393 -6.6777 -0.9981 21 1 5.6661 -6.6788 0.8473 22 6 5.3874 -2.7547 -1.3012 23 6 6.3078 1.4287 -0.0022 24 6 7.8127 1.5094 -0.0023 25 6 5.5570 2.5883 -0.0017 26 6 4.1755 2.5222 -0.0005 27 9 3.4437 3.6579 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.8148 -0.8562 -0.0115 32 1 6.6011 -3.3082 1.7652 33 1 7.6642 -3.1778 0.3275 34 1 5.3556 -5.0446 0.8367 35 1 6.8034 -5.2924 -0.1765 36 1 3.0821 -6.8713 -2.8872 37 1 6.1975 -2.5475 -2.0004 38 1 4.4518 -2.3318 -1.6672 39 1 8.1755 1.5288 -1.0300 40 1 8.1278 2.4176 0.5115 41 1 8.2232 0.6402 0.5116 42 1 6.0500 3.5491 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230036003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:20 Heat of formation + Delta-G solvation = -98.782420 kcal Electronic energy + Delta-G solvation = -27688.259287 eV Core-core repulsion = 23549.995110 eV Total energy + Delta-G solvation = -4138.264177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.01354 -40.86215 -40.12836 -38.22996 -36.66138 -36.35293 -33.40737 -32.51540 -30.27574 -29.49177 -28.62285 -28.37105 -27.07736 -24.34406 -23.26161 -22.93315 -21.18343 -20.99877 -20.37694 -18.74832 -17.80008 -17.48252 -17.28701 -16.63752 -16.61128 -16.32049 -15.79437 -15.57131 -14.88424 -14.77342 -14.53505 -14.12500 -13.72693 -13.63162 -13.47702 -13.43661 -13.32014 -13.00176 -12.62338 -12.41867 -12.32354 -12.17694 -12.12279 -11.71853 -11.66473 -11.44962 -11.12801 -10.94087 -10.82167 -10.54078 -10.40549 -9.95539 -9.41197 -9.35260 -9.05757 -8.84049 -8.26056 -7.13557 -6.35356 -3.29042 0.26143 0.91579 2.27032 2.45436 3.01020 3.29218 3.33065 3.41416 3.64601 3.90260 4.21708 4.37218 4.53852 4.64534 4.74511 4.80719 4.91915 4.98797 5.06174 5.06278 5.14569 5.18854 5.26895 5.34521 5.42503 5.43991 5.45423 5.60482 5.65900 5.69919 5.81496 5.89720 6.02011 6.03793 6.15236 6.21187 6.31690 6.35457 6.46645 6.61359 7.27762 7.53098 7.54792 8.25907 8.97731 9.47418 10.12555 11.14980 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003939 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.750140 B = 7107.346009 C = 8773.811171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.348 6.348 3 C 0.509 3.491 4 O -0.496 6.496 5 C -0.131 4.131 6 C -0.123 4.123 7 C 0.118 3.882 8 O -0.293 6.293 9 C 0.060 3.940 10 H 0.088 0.912 11 C -0.118 4.118 12 C 0.095 3.905 13 N -0.609 5.609 14 C -0.324 4.324 15 H 0.080 0.920 16 C -0.024 4.024 17 N -0.929 5.929 18 Si 1.080 2.920 19 H -0.301 1.301 20 H -0.297 1.297 21 H -0.285 1.285 22 C 0.121 3.879 23 C -0.054 4.054 24 C -0.111 4.111 25 C -0.133 4.133 26 C 0.126 3.874 27 F -0.119 7.119 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.159 0.841 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.261 0.739 37 H 0.036 0.964 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 18.582 7.701 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.265 6.265 3 C 0.353 3.647 4 O -0.384 6.384 5 C -0.133 4.133 6 C -0.142 4.142 7 C 0.072 3.928 8 O -0.206 6.206 9 C 0.003 3.997 10 H 0.106 0.894 11 C -0.156 4.156 12 C -0.030 4.030 13 N -0.338 5.338 14 C -0.451 4.451 15 H 0.098 0.902 16 C -0.224 4.224 17 N -0.571 5.571 18 Si 0.914 3.086 19 H -0.229 1.229 20 H -0.226 1.226 21 H -0.212 1.212 22 C -0.006 4.006 23 C -0.055 4.055 24 C -0.168 4.168 25 C -0.152 4.152 26 C 0.106 3.894 27 F -0.097 7.097 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.176 0.824 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.335 17.407 8.310 19.770 hybrid contribution -1.183 1.640 -0.860 2.198 sum 3.152 19.047 7.450 20.694 Atomic orbital electron populations 1.23339 0.75431 1.04260 1.02542 1.86589 1.23953 1.31908 1.84014 1.20864 0.88579 0.81906 0.73336 1.90883 1.66532 1.35802 1.45207 1.18867 0.90058 0.93068 1.11338 1.21611 0.92804 0.99136 1.00603 1.18706 0.89321 0.87294 0.97520 1.86121 1.34981 1.12317 1.87177 1.24002 0.95652 0.80536 0.99469 0.89413 1.22636 0.99559 0.93070 1.00288 1.22224 0.95129 0.95177 0.90439 1.44653 1.58334 1.02352 1.28471 1.20180 1.22344 0.88555 1.13992 0.90224 1.25816 1.01786 0.91715 1.03049 1.70909 1.19099 1.37367 1.29697 0.83731 0.74685 0.74521 0.75629 1.22913 1.22567 1.21227 1.21971 0.99336 0.86235 0.93032 1.19352 0.97403 0.89228 0.99500 1.20745 0.89243 1.03495 1.03271 1.20769 0.90756 0.99478 1.04190 1.17455 0.89081 0.80916 1.01920 1.91579 1.77153 1.47718 1.93256 0.91697 0.87489 0.91779 0.82387 0.90381 0.90059 0.92630 0.93835 0.92844 0.94598 0.93169 0.90269 0.91072 0.90091 0.83141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.46 16 2 O -0.35 -4.83 9.82 -40.59 -0.40 -5.23 16 3 C 0.51 7.56 7.89 34.54 0.27 7.83 16 4 O -0.50 -8.24 15.12 -19.26 -0.29 -8.53 16 5 C -0.13 -1.80 5.88 -104.94 -0.62 -2.42 16 6 C -0.12 -1.64 8.52 -39.01 -0.33 -1.97 16 7 C 0.12 1.50 6.64 -39.30 -0.26 1.24 16 8 O -0.29 -4.06 8.97 -19.59 -0.18 -4.23 16 9 C 0.06 0.93 2.82 -24.46 -0.07 0.86 16 10 H 0.09 1.30 6.20 -51.93 -0.32 0.97 16 11 C -0.12 -1.82 6.68 -24.90 -0.17 -1.99 16 12 C 0.09 1.94 4.65 -3.06 -0.01 1.93 16 13 N -0.61 -14.38 3.36 -169.93 -0.57 -14.95 16 14 C -0.32 -9.06 10.60 -15.06 -0.16 -9.22 16 15 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 16 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 17 N -0.93 -28.75 13.70 55.49 0.76 -27.99 16 18 Si 1.08 26.05 24.50 -169.99 -4.17 21.89 16 19 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.30 -6.83 6.47 56.52 0.37 -6.46 16 21 H -0.28 -6.19 5.45 56.52 0.31 -5.88 16 22 C 0.12 2.33 6.88 -2.41 -0.02 2.32 16 23 C -0.05 -0.57 5.90 -104.40 -0.62 -1.18 16 24 C -0.11 -0.90 9.78 36.01 0.35 -0.54 16 25 C -0.13 -1.34 9.65 -39.59 -0.38 -1.73 16 26 C 0.13 1.61 7.28 -38.95 -0.28 1.32 16 27 F -0.12 -1.67 15.54 2.25 0.04 -1.63 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.16 2.20 5.23 -52.49 -0.27 1.92 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.18 6.14 -51.93 -0.32 0.86 16 35 H 0.04 0.94 3.97 -51.93 -0.21 0.74 16 36 H 0.26 8.01 8.73 -40.82 -0.36 7.65 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.97 7.86 -51.93 -0.41 0.56 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 41 H 0.08 0.70 7.51 -51.93 -0.39 0.31 16 42 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -33.09 346.10 -6.34 -39.43 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.43 Total: -1.09 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.32 Total: -2.88 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.19 Total: -42.93 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.87 Total: -17.99 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.17 Total: 21.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.09 -6.34 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230036003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.352 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds