Wall clock time and date at job start Tue Mar 31 2020 14:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34735 * 117.00125 * 2 1 4 4 O 1.21491 * 119.99689 * 359.97438 * 3 2 1 5 5 C 1.47574 * 119.99982 * 180.02562 * 3 2 1 6 6 C 1.39687 * 120.14739 * 0.28964 * 5 3 2 7 7 C 1.38320 * 119.81543 * 180.26951 * 6 5 3 8 8 O 1.35951 * 119.94929 * 179.70604 * 7 6 5 9 9 C 1.42902 * 116.99917 * 354.99244 * 8 7 6 10 10 H 1.09004 * 110.88174 * 327.67059 * 9 8 7 11 11 C 1.55154 * 111.00278 * 203.79125 * 9 8 7 12 12 C 1.54325 * 102.93989 * 206.38401 * 11 9 8 13 13 N 1.47025 * 107.27154 * 22.19258 * 12 11 9 14 14 C 1.36940 * 125.64942 * 181.02359 * 13 12 11 15 15 H 1.07993 * 120.00220 * 173.47255 * 14 13 12 16 16 C 1.38811 * 119.99845 * 353.48104 * 14 13 12 17 17 N 1.31620 * 120.00192 * 167.40254 * 16 14 13 18 18 Si 1.86802 * 119.99841 * 347.39466 * 16 14 13 19 19 H 1.48504 * 109.46756 * 186.08663 * 18 16 14 20 20 H 1.48493 * 109.47230 * 306.08676 * 18 16 14 21 21 H 1.48501 * 109.46942 * 66.09100 * 18 16 14 22 22 C 1.47423 * 108.70557 * 1.28433 * 13 12 11 23 23 C 1.38918 * 120.10390 * 359.43383 * 7 6 5 24 24 C 1.50703 * 119.84608 * 180.24951 * 23 7 6 25 25 C 1.38147 * 120.30415 * 0.27695 * 23 7 6 26 26 C 1.38310 * 120.17878 * 0.02562 * 25 23 7 27 27 F 1.35107 * 120.05364 * 179.97438 * 26 25 23 28 28 H 1.09002 * 109.47362 * 60.00497 * 1 2 3 29 29 H 1.09002 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47231 * 300.00469 * 1 2 3 31 31 H 1.07999 * 120.09265 * 359.97438 * 6 5 3 32 32 H 1.08995 * 110.72234 * 88.02245 * 11 9 8 33 33 H 1.09001 * 110.87041 * 324.81429 * 11 9 8 34 34 H 1.09000 * 109.88170 * 262.77571 * 12 11 9 35 35 H 1.09000 * 110.01197 * 141.68017 * 12 11 9 36 36 H 0.96996 * 120.00003 * 5.06916 * 17 16 14 37 37 H 1.09001 * 110.36336 * 94.48290 * 22 13 12 38 38 H 1.08994 * 110.36974 * 216.80797 * 22 13 12 39 39 H 1.09003 * 109.47159 * 90.00095 * 24 23 7 40 40 H 1.09001 * 109.46900 * 210.00183 * 24 23 7 41 41 H 1.08997 * 109.47269 * 330.00202 * 24 23 7 42 42 H 1.07990 * 119.91409 * 179.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4019 2.2194 -0.0005 5 6 3.5374 1.2777 -0.0006 6 6 4.3011 0.1081 -0.0072 7 6 5.6820 0.1885 -0.0021 8 8 6.4280 -0.9481 -0.0025 9 6 5.7231 -2.1868 0.1028 10 1 4.8231 -2.0715 0.7068 11 6 6.6387 -3.3006 0.6759 12 6 6.0169 -4.5899 0.0991 13 7 5.2475 -4.2075 -1.0940 14 6 4.5252 -5.0606 -1.8851 15 1 3.9077 -4.6680 -2.6794 16 6 4.5867 -6.4299 -1.6660 17 7 3.7181 -7.2292 -2.2483 18 14 5.9023 -7.1383 -0.5449 19 1 5.8472 -8.6215 -0.5927 20 1 7.2393 -6.6777 -0.9981 21 1 5.6661 -6.6788 0.8473 22 6 5.3874 -2.7547 -1.3012 23 6 6.3078 1.4287 -0.0022 24 6 7.8127 1.5094 -0.0023 25 6 5.5570 2.5883 -0.0017 26 6 4.1755 2.5222 -0.0005 27 9 3.4437 3.6579 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.8148 -0.8562 -0.0115 32 1 6.6011 -3.3082 1.7652 33 1 7.6642 -3.1778 0.3275 34 1 5.3556 -5.0446 0.8367 35 1 6.8034 -5.2924 -0.1765 36 1 3.0821 -6.8713 -2.8872 37 1 6.1975 -2.5475 -2.0004 38 1 4.4518 -2.3318 -1.6672 39 1 8.1755 1.5288 -1.0300 40 1 8.1278 2.4176 0.5115 41 1 8.2232 0.6402 0.5116 42 1 6.0500 3.5491 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230036003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:19 Heat of formation + Delta-G solvation = -119.647082 kcal Electronic energy + Delta-G solvation = -27689.164047 eV Core-core repulsion = 23549.995110 eV Total energy + Delta-G solvation = -4139.168937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.04495 -41.92211 -41.23942 -39.49581 -37.90639 -37.55780 -34.64759 -34.19207 -31.69087 -30.75281 -29.86536 -29.53246 -27.92545 -26.07162 -24.34657 -23.97921 -22.70674 -22.14784 -21.78687 -19.83299 -19.63201 -18.74337 -18.35046 -17.71300 -17.67802 -17.39384 -17.22530 -16.70547 -16.28182 -16.02537 -15.58948 -15.45620 -15.37731 -14.72736 -14.54845 -14.48726 -14.29778 -14.21592 -14.03238 -13.71206 -13.58740 -13.17324 -13.10298 -13.04820 -12.82518 -12.63653 -12.62830 -12.21158 -11.96906 -11.79017 -11.64652 -11.58307 -11.35318 -11.01733 -10.76360 -10.23620 -9.28396 -9.13720 -8.63682 -5.49431 -0.72593 -0.02608 1.20623 1.41013 1.46785 1.52759 1.72123 1.91159 2.32114 2.55964 2.94786 3.15952 3.23796 3.30426 3.47883 3.51188 3.72098 3.76445 3.82220 3.95535 4.14946 4.18287 4.21533 4.30918 4.43936 4.48836 4.57378 4.59120 4.64371 4.69165 4.76851 4.81684 4.87847 4.88956 4.94584 5.09243 5.14515 5.20659 5.28406 5.47096 5.53710 6.06299 6.18927 6.42968 6.80455 7.39846 8.03869 8.87687 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.003939 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.750140 B = 7107.346009 C = 8773.811171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.506 3.494 4 O -0.522 6.522 5 C -0.151 4.151 6 C -0.127 4.127 7 C 0.103 3.897 8 O -0.286 6.286 9 C 0.077 3.923 10 H 0.095 0.905 11 C -0.105 4.105 12 C 0.083 3.917 13 N -0.630 5.630 14 C -0.313 4.313 15 H 0.044 0.956 16 C -0.083 4.083 17 N -0.966 5.966 18 Si 1.116 2.884 19 H -0.315 1.315 20 H -0.278 1.278 21 H -0.242 1.242 22 C 0.116 3.884 23 C -0.039 4.039 24 C -0.112 4.112 25 C -0.117 4.117 26 C 0.118 3.882 27 F -0.129 7.129 28 H 0.066 0.934 29 H 0.127 0.873 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.245 0.755 37 H 0.035 0.965 38 H 0.038 0.962 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 20.475 9.887 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.352 3.648 4 O -0.413 6.413 5 C -0.153 4.153 6 C -0.146 4.146 7 C 0.057 3.943 8 O -0.199 6.199 9 C 0.020 3.980 10 H 0.113 0.887 11 C -0.142 4.142 12 C -0.041 4.041 13 N -0.359 5.359 14 C -0.442 4.442 15 H 0.062 0.938 16 C -0.275 4.275 17 N -0.610 5.610 18 Si 0.943 3.057 19 H -0.245 1.245 20 H -0.206 1.206 21 H -0.167 1.167 22 C -0.010 4.010 23 C -0.040 4.040 24 C -0.168 4.168 25 C -0.135 4.135 26 C 0.098 3.902 27 F -0.107 7.107 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.293 19.360 10.512 23.205 hybrid contribution -2.154 1.195 -1.646 2.963 sum 5.138 20.555 8.865 22.967 Atomic orbital electron populations 1.23612 0.73876 1.05771 1.03070 1.86582 1.25682 1.31674 1.83707 1.21165 0.89216 0.81747 0.72630 1.90854 1.67179 1.36469 1.46775 1.18925 0.89479 0.93878 1.13017 1.21464 0.93282 0.98494 1.01334 1.18918 0.89031 0.87763 0.98589 1.86116 1.34362 1.11905 1.87516 1.23644 0.96374 0.81511 0.96464 0.88695 1.22620 0.99631 0.89735 1.02232 1.22404 0.94644 0.98050 0.88994 1.44680 1.58415 1.03679 1.29137 1.20052 1.21425 0.89496 1.13178 0.93821 1.27225 1.03118 0.92507 1.04619 1.71028 1.20646 1.38070 1.31274 0.83368 0.72907 0.73002 0.76441 1.24451 1.20586 1.16717 1.22088 0.98744 0.84229 0.95936 1.19713 0.99004 0.88153 0.97128 1.20870 0.86803 1.04903 1.04192 1.21127 0.89362 1.00958 1.02082 1.17766 0.90150 0.80180 1.02125 1.91554 1.77682 1.48112 1.93373 0.91542 0.85512 0.90949 0.83587 0.86683 0.88389 0.93056 0.94052 0.94555 0.94757 0.94373 0.89355 0.88214 0.90326 0.79492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 16 2 O -0.36 -10.24 9.82 -56.45 -0.55 -10.79 16 3 C 0.51 15.34 7.89 70.29 0.55 15.89 16 4 O -0.52 -17.70 15.12 19.87 0.30 -17.40 16 5 C -0.15 -4.09 5.88 -20.07 -0.12 -4.21 16 6 C -0.13 -3.28 8.52 22.64 0.19 -3.09 16 7 C 0.10 2.36 6.64 22.45 0.15 2.51 16 8 O -0.29 -7.02 8.97 -93.00 -0.83 -7.85 16 9 C 0.08 2.20 2.82 32.06 0.09 2.29 16 10 H 0.10 2.61 6.20 -2.38 -0.01 2.59 16 11 C -0.10 -2.80 6.68 31.78 0.21 -2.59 16 12 C 0.08 3.16 4.65 86.73 0.40 3.56 16 13 N -0.63 -29.48 3.36 -691.55 -2.32 -31.80 16 14 C -0.31 -18.03 10.60 84.03 0.89 -17.14 16 15 H 0.04 2.75 8.06 -2.91 -0.02 2.72 16 16 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 17 N -0.97 -62.03 13.70 21.65 0.30 -61.73 16 18 Si 1.12 51.79 24.50 68.60 1.68 53.47 16 19 H -0.31 -15.26 7.11 99.48 0.71 -14.56 16 20 H -0.28 -11.96 6.47 99.48 0.64 -11.31 16 21 H -0.24 -9.58 5.45 99.48 0.54 -9.04 16 22 C 0.12 4.41 6.88 86.93 0.60 5.01 16 23 C -0.04 -0.68 5.90 -19.72 -0.12 -0.80 16 24 C -0.11 -1.27 9.78 71.24 0.70 -0.57 16 25 C -0.12 -1.95 9.65 22.27 0.21 -1.73 16 26 C 0.12 2.82 7.28 22.68 0.17 2.98 16 27 F -0.13 -3.50 15.54 44.97 0.70 -2.80 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.15 4.08 5.23 -2.91 -0.02 4.06 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 2.01 6.14 -2.39 -0.01 1.99 16 35 H 0.04 1.64 3.97 -2.39 -0.01 1.64 16 36 H 0.25 15.91 8.73 -92.71 -0.81 15.10 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.04 1.51 7.86 -2.39 -0.02 1.49 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.10 0.61 8.08 -2.39 -0.02 0.59 16 41 H 0.08 1.00 7.51 -2.39 -0.02 0.98 16 42 H 0.19 1.74 8.06 -2.92 -0.02 1.71 16 Total: -1.00 -75.39 346.10 5.65 -69.73 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.79 Total: 9.63 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 5.60 Total: -0.46 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -2.03 Total: -93.53 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.09 Total: -36.04 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.70 Total: -2.80 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.68 Total: 53.47 kcal Total: -75.39 5.65 -69.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230036003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.916 kcal (2) G-P(sol) polarization free energy of solvation -75.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds