Wall clock time and date at job start Tue Mar 31 2020 14:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34728 * 116.99571 * 2 1 4 4 O 1.21488 * 120.00138 * 359.97438 * 3 2 1 5 5 C 1.47570 * 119.99570 * 179.97438 * 3 2 1 6 6 C 1.39689 * 120.15063 * 359.97438 * 5 3 2 7 7 C 1.38319 * 119.81889 * 179.97438 * 6 5 3 8 8 O 1.35948 * 119.94462 * 179.97438 * 7 6 5 9 9 C 1.42898 * 117.00290 * 5.37685 * 8 7 6 10 10 H 1.08996 * 110.88296 * 38.73469 * 9 8 7 11 11 C 1.55161 * 111.00635 * 162.65985 * 9 8 7 12 12 C 1.54328 * 103.01874 * 153.37742 * 11 9 8 13 13 N 1.47022 * 107.27127 * 338.14313 * 12 11 9 14 14 C 1.36931 * 125.65021 * 178.84737 * 13 12 11 15 15 H 1.08004 * 120.00095 * 174.18135 * 14 13 12 16 16 C 1.38814 * 119.99900 * 354.44885 * 14 13 12 17 17 N 1.31615 * 119.99941 * 9.75690 * 16 14 13 18 18 Si 1.86807 * 119.99878 * 189.75196 * 16 14 13 19 19 H 1.48495 * 109.46750 * 94.96661 * 18 16 14 20 20 H 1.48503 * 109.46908 * 214.96257 * 18 16 14 21 21 H 1.48496 * 109.46894 * 334.96469 * 18 16 14 22 22 C 1.47421 * 108.70016 * 358.58235 * 13 12 11 23 23 C 1.38911 * 120.10889 * 0.26199 * 7 6 5 24 24 C 1.50702 * 119.85441 * 179.74403 * 23 7 6 25 25 C 1.38153 * 120.29768 * 359.48218 * 23 7 6 26 26 C 1.38312 * 120.18169 * 0.51546 * 25 23 7 27 27 F 1.35101 * 120.05275 * 179.72247 * 26 25 23 28 28 H 1.09007 * 109.46683 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47003 * 299.99919 * 1 2 3 30 30 H 1.08997 * 109.47380 * 60.00176 * 1 2 3 31 31 H 1.07998 * 120.09039 * 359.96608 * 6 5 3 32 32 H 1.08994 * 110.71772 * 271.93992 * 11 9 8 33 33 H 1.09001 * 110.71524 * 35.03601 * 11 9 8 34 34 H 1.08999 * 109.99160 * 218.66213 * 12 11 9 35 35 H 1.09007 * 109.77572 * 97.50002 * 12 11 9 36 36 H 0.97005 * 119.99866 * 179.97438 * 17 16 14 37 37 H 1.08999 * 110.36656 * 143.19144 * 22 13 12 38 38 H 1.08993 * 110.37267 * 265.40837 * 22 13 12 39 39 H 1.08994 * 109.47324 * 89.99793 * 24 23 7 40 40 H 1.08995 * 109.47180 * 209.99951 * 24 23 7 41 41 H 1.09007 * 109.46472 * 329.99858 * 24 23 7 42 42 H 1.08001 * 119.91403 * 180.23531 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2193 -0.0005 5 6 3.5373 1.2777 0.0006 6 6 4.3012 0.1082 0.0017 7 6 5.6820 0.1886 0.0016 8 8 6.4279 -0.9480 0.0032 9 6 5.7242 -2.1861 -0.1145 10 1 4.8943 -2.0961 -0.8153 11 6 6.6826 -3.3333 -0.5303 12 6 5.9930 -4.5882 0.0453 13 7 5.1021 -4.1400 1.1256 14 6 4.2909 -4.9470 1.8776 15 1 3.7425 -4.5348 2.7118 16 6 4.1776 -6.2962 1.5713 17 7 4.9874 -6.8408 0.6882 18 14 2.8757 -7.3389 2.4125 19 1 1.6648 -7.4051 1.5554 20 1 3.4038 -8.7097 2.6300 21 1 2.5236 -6.7306 3.7206 22 6 5.2316 -2.6785 1.2693 23 6 6.3079 1.4287 0.0061 24 6 7.8127 1.5096 0.0119 25 6 5.5570 2.5884 -0.0003 26 6 4.1754 2.5222 -0.0004 27 9 3.4437 3.6579 -0.0009 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8149 -0.8561 0.0026 32 1 6.7602 -3.3966 -1.6156 33 1 7.6665 -3.1953 -0.0820 34 1 6.7404 -5.2752 0.4422 35 1 5.4116 -5.0800 -0.7346 36 1 4.9085 -7.7837 0.4744 37 1 4.2657 -2.2337 1.5083 38 1 5.9615 -2.4364 2.0417 39 1 8.1794 1.5308 -1.0143 40 1 8.1258 2.4169 0.5284 41 1 8.2212 0.6395 0.5259 42 1 6.0500 3.5493 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230036007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:22 Heat of formation + Delta-G solvation = -127.860222 kcal Electronic energy + Delta-G solvation = -27669.053066 eV Core-core repulsion = 23529.527981 eV Total energy + Delta-G solvation = -4139.525085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.01127 -41.87200 -41.17605 -39.28098 -37.75352 -37.45610 -34.45554 -34.03892 -31.44944 -30.65053 -29.48857 -29.16852 -27.88870 -26.54608 -24.27654 -23.95501 -22.40525 -21.83675 -21.71226 -19.70576 -19.08594 -18.59594 -18.27145 -17.64378 -17.58424 -17.33630 -16.74036 -16.71031 -16.40929 -15.71932 -15.64107 -15.39496 -14.95895 -14.56733 -14.45659 -14.34838 -14.14294 -14.09634 -13.82684 -13.73829 -13.27184 -13.05543 -12.95727 -12.80308 -12.76152 -12.56034 -12.51371 -12.13959 -12.02707 -11.92166 -11.87053 -11.77386 -11.51661 -11.45284 -10.68339 -10.19833 -9.23332 -8.94053 -7.88998 -5.23069 -0.68588 0.01773 1.24739 1.47504 1.48800 1.51385 1.57567 1.97921 2.36471 2.50186 2.98519 3.28539 3.31661 3.51696 3.62245 3.69040 3.80455 3.90751 3.93120 4.05623 4.19702 4.26078 4.27450 4.48347 4.58041 4.60349 4.62743 4.68836 4.73299 4.82127 4.86936 4.90351 4.97734 5.01778 5.13311 5.22722 5.31464 5.44301 5.55851 5.61399 5.71892 6.14287 6.27295 6.47585 7.07341 7.72558 8.36039 9.22117 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.004011 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.117342 B = 6978.487502 C = 8878.473706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.508 3.492 4 O -0.522 6.522 5 C -0.150 4.150 6 C -0.125 4.125 7 C 0.102 3.898 8 O -0.291 6.291 9 C 0.081 3.919 10 H 0.088 0.912 11 C -0.117 4.117 12 C 0.183 3.817 13 N -0.622 5.622 14 C -0.247 4.247 15 H 0.081 0.919 16 C -0.056 4.056 17 N -0.945 5.945 18 Si 0.974 3.026 19 H -0.285 1.285 20 H -0.294 1.294 21 H -0.270 1.270 22 C 0.115 3.885 23 C -0.041 4.041 24 C -0.111 4.111 25 C -0.117 4.117 26 C 0.117 3.883 27 F -0.129 7.129 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.016 0.984 35 H 0.022 0.978 36 H 0.249 0.751 37 H 0.047 0.953 38 H 0.028 0.972 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 18.363 -4.207 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.354 3.646 4 O -0.413 6.413 5 C -0.153 4.153 6 C -0.144 4.144 7 C 0.056 3.944 8 O -0.203 6.203 9 C 0.024 3.976 10 H 0.106 0.894 11 C -0.155 4.155 12 C 0.058 3.942 13 N -0.350 5.350 14 C -0.376 4.376 15 H 0.098 0.902 16 C -0.250 4.250 17 N -0.593 5.593 18 Si 0.802 3.198 19 H -0.212 1.212 20 H -0.221 1.221 21 H -0.194 1.194 22 C -0.011 4.011 23 C -0.042 4.042 24 C -0.167 4.167 25 C -0.135 4.135 26 C 0.097 3.903 27 F -0.107 7.107 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.921 18.445 -4.173 19.009 hybrid contribution -1.588 -0.967 0.504 1.926 sum 0.333 17.478 -3.669 17.862 Atomic orbital electron populations 1.23617 0.73876 1.05818 1.03022 1.86593 1.25680 1.31574 1.83659 1.21127 0.89140 0.81771 0.72603 1.90850 1.67158 1.36480 1.46843 1.18929 0.89567 0.93797 1.12958 1.21500 0.93185 0.98560 1.01177 1.18951 0.89169 0.87755 0.98490 1.86117 1.34713 1.12087 1.87432 1.23548 0.95594 0.81213 0.97217 0.89378 1.22815 0.98671 0.91976 1.02069 1.20989 0.91372 0.92316 0.89538 1.44591 1.48774 1.01759 1.39827 1.19385 1.18576 0.90581 1.09024 0.90158 1.25589 1.01146 0.97886 1.00345 1.70156 1.39253 1.11680 1.38226 0.85134 0.78790 0.77733 0.78132 1.21233 1.22083 1.19434 1.22094 0.98621 0.84898 0.95461 1.19707 0.98941 0.88220 0.97339 1.20855 0.86955 1.04570 1.04340 1.21109 0.89408 1.00847 1.02151 1.17742 0.90100 0.80190 1.02241 1.91550 1.77663 1.48093 1.93395 0.85403 0.91435 0.91133 0.83565 0.88550 0.89802 0.96534 0.95985 0.94141 0.93498 0.95419 0.88825 0.88372 0.90954 0.79502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -10.30 9.82 -56.38 -0.55 -10.85 16 3 C 0.51 15.61 7.89 70.28 0.55 16.16 16 4 O -0.52 -17.87 15.12 19.88 0.30 -17.57 16 5 C -0.15 -4.22 5.88 -20.07 -0.12 -4.34 16 6 C -0.13 -3.44 8.27 22.64 0.19 -3.25 16 7 C 0.10 2.57 6.60 22.45 0.15 2.72 16 8 O -0.29 -8.08 8.98 -92.97 -0.83 -8.91 16 9 C 0.08 2.64 2.82 31.99 0.09 2.73 16 10 H 0.09 2.79 6.63 -2.39 -0.02 2.77 16 11 C -0.12 -3.97 6.68 31.79 0.21 -3.76 16 12 C 0.18 8.57 5.38 86.73 0.47 9.04 16 13 N -0.62 -31.02 3.39 -691.98 -2.35 -33.37 16 14 C -0.25 -13.56 10.26 84.03 0.86 -12.70 16 15 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 16 C -0.06 -3.10 5.47 84.86 0.46 -2.63 16 17 N -0.95 -55.08 10.40 21.65 0.23 -54.86 16 18 Si 0.97 44.66 29.57 68.60 2.03 46.69 16 19 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 C 0.12 4.58 6.58 86.86 0.57 5.15 16 23 C -0.04 -0.79 5.90 -19.72 -0.12 -0.91 16 24 C -0.11 -1.47 9.78 71.24 0.70 -0.78 16 25 C -0.12 -2.09 9.65 22.27 0.21 -1.87 16 26 C 0.12 2.91 7.28 22.68 0.17 3.07 16 27 F -0.13 -3.57 15.54 44.97 0.70 -2.87 16 28 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.15 4.35 4.82 -2.91 -0.01 4.33 16 32 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 35 H 0.02 1.14 7.36 -2.38 -0.02 1.12 16 36 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 37 H 0.05 1.83 7.20 -2.39 -0.02 1.82 16 38 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 0.81 8.08 -2.39 -0.02 0.79 16 41 H 0.07 1.16 7.52 -2.38 -0.02 1.14 16 42 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -68.93 353.55 6.16 -62.77 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.05 Total: 8.52 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.60 Total: 10.46 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -2.12 Total: -88.23 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -1.09 Total: -37.33 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.70 Total: -2.87 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.93 6.16 -62.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230036007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.091 kcal (2) G-P(sol) polarization free energy of solvation -68.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds