Wall clock time and date at job start Tue Mar 31 2020 13:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30538 * 1 3 3 Si 1.86803 * 119.99733 * 2 1 4 4 H 1.48498 * 109.47111 * 270.00255 * 3 2 1 5 5 H 1.48500 * 109.46924 * 30.00045 * 3 2 1 6 6 H 1.48497 * 109.46970 * 149.99907 * 3 2 1 7 7 C 1.40339 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.41759 * 120.00060 * 0.02562 * 7 2 1 10 10 O 1.21825 * 120.00471 * 0.02562 * 9 7 2 11 11 C 1.47572 * 119.99873 * 179.97438 * 9 7 2 12 12 C 1.39955 * 120.09154 * 179.97438 * 11 9 7 13 13 C 1.37589 * 119.90121 * 180.02562 * 12 11 9 14 14 C 1.39167 * 120.09868 * 0.02562 * 13 12 11 15 15 O 1.35663 * 119.90538 * 179.97438 * 14 13 12 16 16 C 1.42901 * 116.99536 * 185.60800 * 15 14 13 17 17 H 1.08998 * 109.47303 * 22.11565 * 16 15 14 18 18 C 1.50697 * 109.46747 * 142.10937 * 16 15 14 19 19 C 1.38669 * 120.42232 * 219.97381 * 18 16 15 20 20 C 1.38628 * 118.42519 * 180.02562 * 19 18 16 21 21 C 1.38224 * 119.16210 * 0.02562 * 20 19 18 22 22 N 1.31857 * 120.75906 * 359.97438 * 21 20 19 23 23 C 1.31881 * 121.73036 * 359.97438 * 22 21 20 24 24 C 1.52999 * 109.47045 * 262.10955 * 16 15 14 25 25 C 1.53005 * 117.49530 * 128.62763 * 24 16 15 26 26 C 1.52997 * 117.50050 * 60.00528 * 24 16 15 27 27 C 1.39154 * 120.18419 * 0.27444 * 14 13 12 28 28 C 1.37596 * 120.09637 * 359.44230 * 27 14 13 29 29 H 0.96997 * 120.00066 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.04503 * 0.02562 * 12 11 9 31 31 H 1.08001 * 119.95024 * 179.97438 * 13 12 11 32 32 H 1.08005 * 120.78481 * 0.02562 * 19 18 16 33 33 H 1.08005 * 120.41980 * 180.02562 * 20 19 18 34 34 H 1.07996 * 119.62330 * 180.02562 * 21 20 19 35 35 H 1.08002 * 119.62181 * 179.97438 * 23 22 21 36 36 H 1.08998 * 115.54990 * 274.32601 * 24 16 15 37 37 H 1.08997 * 117.50038 * 359.97438 * 25 24 16 38 38 H 1.08995 * 117.49663 * 145.01997 * 25 24 16 39 39 H 1.08993 * 117.50306 * 214.97926 * 26 24 16 40 40 H 1.09007 * 117.49715 * 359.97438 * 26 24 16 41 41 H 1.08008 * 119.95283 * 179.70694 * 27 14 13 42 42 H 1.07999 * 120.04831 * 180.27661 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4867 2.0465 -1.4000 5 1 1.4367 2.6527 0.7001 6 1 3.5368 1.4403 0.7000 7 6 2.0071 -1.2154 -0.0005 8 1 3.0871 -1.2153 -0.0010 9 6 1.2983 -2.4430 -0.0016 10 8 0.0801 -2.4432 -0.0026 11 6 2.0362 -3.7210 -0.0028 12 6 1.3385 -4.9342 -0.0033 13 6 2.0304 -6.1234 -0.0039 14 6 3.4221 -6.1212 -0.0033 15 8 4.1004 -7.2960 -0.0033 16 6 5.5221 -7.2242 0.1217 17 1 5.7990 -6.2753 0.5809 18 6 6.0085 -8.3603 0.9840 19 6 7.0204 -8.1558 1.9099 20 6 7.4362 -9.2300 2.6811 21 6 6.8330 -10.4608 2.5026 22 7 5.8733 -10.6187 1.6123 23 6 5.4518 -9.6192 0.8622 24 6 6.1617 -7.3260 -1.2645 25 6 7.1812 -6.2531 -1.6525 26 6 5.7919 -6.2558 -2.2935 27 6 4.1197 -4.9172 0.0035 28 6 3.4357 -3.7233 -0.0018 29 1 -0.4850 0.8400 -0.0004 30 1 0.2585 -4.9368 -0.0033 31 1 1.4928 -7.0601 -0.0039 32 1 7.4738 -7.1826 2.0272 33 1 8.2215 -9.1068 3.4123 34 1 7.1508 -11.3027 3.0997 35 1 4.6636 -9.7869 0.1431 36 1 6.3322 -8.3385 -1.6303 37 1 7.3959 -5.4746 -0.9205 38 1 8.0226 -6.5597 -2.2738 39 1 5.7193 -6.5641 -3.3364 40 1 5.0925 -5.4795 -1.9830 41 1 5.1998 -4.9198 0.0087 42 1 3.9780 -2.7893 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233525455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:48 Heat of formation + Delta-G solvation = 13.843250 kcal Electronic energy + Delta-G solvation = -25903.313323 eV Core-core repulsion = 22200.702186 eV Total energy + Delta-G solvation = -3702.611137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87907 -39.75040 -37.93621 -36.67091 -35.62081 -33.16497 -32.71683 -31.97556 -30.63786 -29.47738 -27.43226 -26.43881 -23.90304 -23.03541 -22.63771 -22.48719 -22.23718 -20.54962 -19.40917 -18.17596 -17.46023 -16.70683 -16.42292 -16.17888 -15.92017 -15.47658 -15.11213 -14.61294 -14.28622 -14.03153 -13.88146 -13.68019 -13.42451 -13.32705 -13.05303 -12.75406 -12.55401 -12.36778 -11.97844 -11.64096 -11.62608 -11.60429 -11.30355 -11.11089 -10.76798 -10.60271 -10.48193 -10.38664 -10.33886 -10.03820 -9.95404 -9.63318 -9.25145 -9.00748 -8.46527 -7.51529 -7.50440 -6.33743 -4.94174 0.80585 1.00655 1.79565 1.94776 3.01838 3.04450 3.09770 3.12680 3.55225 3.70757 3.97109 3.98065 4.18153 4.44878 4.53058 4.53440 4.62963 4.66542 4.75266 4.79002 4.90426 4.94830 5.17176 5.27986 5.30596 5.40841 5.47888 5.53268 5.75360 5.78260 5.80022 5.84739 5.89018 5.94531 6.03729 6.07769 6.09255 6.26647 6.42462 6.58062 6.77753 7.00407 7.20918 7.29682 7.33434 7.71303 7.78899 7.99173 8.75655 8.80833 10.27966 10.50045 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.002791 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.405060 B =10030.676006 C =10406.492865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.517 4.517 8 H 0.073 0.927 9 C 0.389 3.611 10 O -0.543 6.543 11 C -0.135 4.135 12 C -0.054 4.054 13 C -0.161 4.161 14 C 0.116 3.884 15 O -0.304 6.304 16 C 0.158 3.842 17 H 0.090 0.910 18 C -0.134 4.134 19 C -0.062 4.062 20 C -0.174 4.174 21 C 0.097 3.903 22 N -0.487 5.487 23 C 0.127 3.873 24 C -0.173 4.173 25 C -0.172 4.172 26 C -0.172 4.172 27 C -0.227 4.227 28 C -0.055 4.055 29 H 0.274 0.726 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.076 -14.066 1.187 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.548 4.548 8 H 0.091 0.909 9 C 0.285 3.715 10 O -0.433 6.433 11 C -0.137 4.137 12 C -0.073 4.073 13 C -0.180 4.180 14 C 0.071 3.929 15 O -0.218 6.218 16 C 0.101 3.899 17 H 0.108 0.892 18 C -0.136 4.136 19 C -0.088 4.088 20 C -0.194 4.194 21 C -0.060 4.060 22 N -0.195 5.195 23 C -0.030 4.030 24 C -0.191 4.191 25 C -0.209 4.209 26 C -0.209 4.209 27 C -0.245 4.245 28 C -0.073 4.073 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.856 -15.050 1.080 21.888 hybrid contribution 1.256 1.722 0.120 2.135 sum 17.112 -13.327 1.200 21.723 Atomic orbital electron populations 1.69958 1.07543 1.28123 1.30711 1.26007 0.94639 1.01002 0.92748 0.86387 0.80452 0.80998 0.79209 1.19367 1.20131 1.18535 1.20918 0.94856 0.91663 1.47405 0.90866 1.18066 0.88444 0.85837 0.79177 1.90508 1.15047 1.88525 1.49222 1.21826 0.94027 0.97839 0.99959 1.21241 1.00484 0.90692 0.94842 1.20298 0.90463 0.98819 1.08428 1.19080 0.91581 0.83913 0.98280 1.86002 1.18451 1.29139 1.88236 1.20541 0.79811 0.96817 0.92751 0.89212 1.20669 0.98335 0.96286 0.98269 1.21431 0.94825 0.99661 0.92888 1.22105 1.02095 0.94050 1.01157 1.22835 0.91834 0.96699 0.94610 1.67773 1.12233 1.33881 1.05591 1.22687 0.96861 0.87529 0.95952 1.22647 1.04428 0.96582 0.95491 1.23001 0.93415 1.00640 1.03893 1.23195 0.98306 1.01362 0.98031 1.21109 0.99217 0.92564 1.11613 1.21339 0.94156 0.96935 0.94901 0.91460 0.84993 0.85979 0.84680 0.84560 0.82745 0.82238 0.87238 0.88604 0.88432 0.88490 0.87126 0.86233 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.96 11.73 55.57 0.65 -20.30 16 2 C 0.08 2.10 5.50 -17.31 -0.10 2.01 16 3 Si 0.91 18.90 29.56 -169.99 -5.03 13.88 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.52 -13.94 8.86 -37.45 -0.33 -14.27 16 8 H 0.07 1.77 6.01 -52.49 -0.32 1.45 16 9 C 0.39 10.86 6.91 -34.43 -0.24 10.62 16 10 O -0.54 -17.14 14.89 5.08 0.08 -17.06 16 11 C -0.14 -3.11 5.89 -104.81 -0.62 -3.72 16 12 C -0.05 -1.13 9.59 -39.18 -0.38 -1.51 16 13 C -0.16 -2.87 9.97 -39.47 -0.39 -3.26 16 14 C 0.12 1.91 6.28 -38.90 -0.24 1.66 16 15 O -0.30 -4.39 9.04 -18.69 -0.17 -4.56 16 16 C 0.16 1.82 2.24 -27.88 -0.06 1.76 16 17 H 0.09 1.01 5.12 -51.93 -0.27 0.74 16 18 C -0.13 -1.45 4.96 -104.48 -0.52 -1.97 16 19 C -0.06 -0.56 9.82 -39.28 -0.39 -0.95 16 20 C -0.17 -1.40 10.11 -39.44 -0.40 -1.80 16 21 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 22 N -0.49 -5.73 10.36 -13.25 -0.14 -5.86 16 23 C 0.13 1.48 10.53 -17.55 -0.18 1.29 16 24 C -0.17 -1.78 5.38 -90.62 -0.49 -2.27 16 25 C -0.17 -1.54 10.18 -26.73 -0.27 -1.81 16 26 C -0.17 -1.88 9.65 -26.73 -0.26 -2.14 16 27 C -0.23 -3.67 6.79 -39.48 -0.27 -3.94 16 28 C -0.06 -1.06 9.43 -39.18 -0.37 -1.43 16 29 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 30 H 0.13 2.81 7.65 -52.49 -0.40 2.41 16 31 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 33 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.16 1.81 7.79 -52.49 -0.41 1.40 16 36 H 0.11 1.09 8.11 -51.93 -0.42 0.67 16 37 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.11 1.43 5.18 -51.93 -0.27 1.16 16 41 H 0.12 1.59 5.24 -52.48 -0.28 1.32 16 42 H 0.13 2.43 6.19 -52.49 -0.33 2.11 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -33.04 356.31 -9.70 -42.74 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.77 Total: 6.84 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -5.70 Total: -21.04 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.51 Total: -26.17 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.09 Total: -21.62 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.04 -9.70 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.584 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds