Wall clock time and date at job start Tue Mar 31 2020 13:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30538 * 1 3 3 Si 1.86803 * 119.99733 * 2 1 4 4 H 1.48498 * 109.47111 * 270.00255 * 3 2 1 5 5 H 1.48500 * 109.46924 * 30.00045 * 3 2 1 6 6 H 1.48497 * 109.46970 * 149.99907 * 3 2 1 7 7 C 1.40339 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.41759 * 120.00060 * 0.02562 * 7 2 1 10 10 O 1.21825 * 120.00471 * 0.02562 * 9 7 2 11 11 C 1.47572 * 119.99873 * 179.97438 * 9 7 2 12 12 C 1.39955 * 120.09154 * 179.97438 * 11 9 7 13 13 C 1.37589 * 119.90121 * 180.02562 * 12 11 9 14 14 C 1.39167 * 120.09868 * 0.02562 * 13 12 11 15 15 O 1.35663 * 119.90538 * 179.97438 * 14 13 12 16 16 C 1.42901 * 116.99536 * 185.60800 * 15 14 13 17 17 H 1.08998 * 109.47303 * 22.11565 * 16 15 14 18 18 C 1.50697 * 109.46747 * 142.10937 * 16 15 14 19 19 C 1.38669 * 120.42232 * 219.97381 * 18 16 15 20 20 C 1.38628 * 118.42519 * 180.02562 * 19 18 16 21 21 C 1.38224 * 119.16210 * 0.02562 * 20 19 18 22 22 N 1.31857 * 120.75906 * 359.97438 * 21 20 19 23 23 C 1.31881 * 121.73036 * 359.97438 * 22 21 20 24 24 C 1.52999 * 109.47045 * 262.10955 * 16 15 14 25 25 C 1.53005 * 117.49530 * 128.62763 * 24 16 15 26 26 C 1.52997 * 117.50050 * 60.00528 * 24 16 15 27 27 C 1.39154 * 120.18419 * 0.27444 * 14 13 12 28 28 C 1.37596 * 120.09637 * 359.44230 * 27 14 13 29 29 H 0.96997 * 120.00066 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.04503 * 0.02562 * 12 11 9 31 31 H 1.08001 * 119.95024 * 179.97438 * 13 12 11 32 32 H 1.08005 * 120.78481 * 0.02562 * 19 18 16 33 33 H 1.08005 * 120.41980 * 180.02562 * 20 19 18 34 34 H 1.07996 * 119.62330 * 180.02562 * 21 20 19 35 35 H 1.08002 * 119.62181 * 179.97438 * 23 22 21 36 36 H 1.08998 * 115.54990 * 274.32601 * 24 16 15 37 37 H 1.08997 * 117.50038 * 359.97438 * 25 24 16 38 38 H 1.08995 * 117.49663 * 145.01997 * 25 24 16 39 39 H 1.08993 * 117.50306 * 214.97926 * 26 24 16 40 40 H 1.09007 * 117.49715 * 359.97438 * 26 24 16 41 41 H 1.08008 * 119.95283 * 179.70694 * 27 14 13 42 42 H 1.07999 * 120.04831 * 180.27661 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4867 2.0465 -1.4000 5 1 1.4367 2.6527 0.7001 6 1 3.5368 1.4403 0.7000 7 6 2.0071 -1.2154 -0.0005 8 1 3.0871 -1.2153 -0.0010 9 6 1.2983 -2.4430 -0.0016 10 8 0.0801 -2.4432 -0.0026 11 6 2.0362 -3.7210 -0.0028 12 6 1.3385 -4.9342 -0.0033 13 6 2.0304 -6.1234 -0.0039 14 6 3.4221 -6.1212 -0.0033 15 8 4.1004 -7.2960 -0.0033 16 6 5.5221 -7.2242 0.1217 17 1 5.7990 -6.2753 0.5809 18 6 6.0085 -8.3603 0.9840 19 6 7.0204 -8.1558 1.9099 20 6 7.4362 -9.2300 2.6811 21 6 6.8330 -10.4608 2.5026 22 7 5.8733 -10.6187 1.6123 23 6 5.4518 -9.6192 0.8622 24 6 6.1617 -7.3260 -1.2645 25 6 7.1812 -6.2531 -1.6525 26 6 5.7919 -6.2558 -2.2935 27 6 4.1197 -4.9172 0.0035 28 6 3.4357 -3.7233 -0.0018 29 1 -0.4850 0.8400 -0.0004 30 1 0.2585 -4.9368 -0.0033 31 1 1.4928 -7.0601 -0.0039 32 1 7.4738 -7.1826 2.0272 33 1 8.2215 -9.1068 3.4123 34 1 7.1508 -11.3027 3.0997 35 1 4.6636 -9.7869 0.1431 36 1 6.3322 -8.3385 -1.6303 37 1 7.3959 -5.4746 -0.9205 38 1 8.0226 -6.5597 -2.2738 39 1 5.7193 -6.5641 -3.3364 40 1 5.0925 -5.4795 -1.9830 41 1 5.1998 -4.9198 0.0087 42 1 3.9780 -2.7893 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233525455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:48 Heat of formation + Delta-G solvation = -4.887264 kcal Electronic energy + Delta-G solvation = -25904.125539 eV Core-core repulsion = 22200.702186 eV Total energy + Delta-G solvation = -3703.423353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85223 -40.77464 -39.44116 -38.00743 -37.10388 -34.78210 -33.96297 -32.74231 -32.12880 -31.05303 -28.84245 -27.87689 -24.73887 -24.25911 -23.94394 -23.40951 -23.16982 -21.91051 -20.84438 -19.39534 -18.61172 -18.18808 -17.56243 -17.24558 -16.97244 -16.90673 -16.12433 -15.95323 -15.48041 -15.40374 -14.99833 -14.80608 -14.54087 -14.49490 -14.38172 -14.17237 -13.99004 -13.66671 -13.22383 -13.10897 -12.99571 -12.76328 -12.68933 -12.44117 -12.37299 -12.04958 -11.85608 -11.61792 -11.34502 -11.17422 -10.98670 -10.75664 -10.39837 -9.98870 -9.94173 -9.61220 -9.02931 -8.33831 -7.06874 0.07115 0.22299 0.31340 0.45816 1.38837 1.39382 1.56111 1.99024 2.20718 2.21418 2.81131 2.84295 2.91233 3.40666 3.65149 3.68047 3.73221 3.76772 3.90796 3.96786 4.02881 4.03950 4.08530 4.14082 4.24401 4.26701 4.43777 4.52279 4.56143 4.67198 4.74686 4.79278 4.84797 4.99813 5.07767 5.14453 5.16531 5.20833 5.22513 5.24404 5.31867 5.44210 5.73210 5.74162 5.80067 5.97775 6.44358 6.70382 6.81423 7.00421 8.26117 8.50045 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.002791 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.405060 B =10030.676006 C =10406.492865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.021 3.979 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.242 1.242 7 C -0.542 4.542 8 H 0.098 0.902 9 C 0.364 3.636 10 O -0.602 6.602 11 C -0.178 4.178 12 C -0.065 4.065 13 C -0.164 4.164 14 C 0.137 3.863 15 O -0.307 6.307 16 C 0.156 3.844 17 H 0.099 0.901 18 C -0.145 4.145 19 C -0.064 4.064 20 C -0.165 4.165 21 C 0.088 3.912 22 N -0.516 5.516 23 C 0.107 3.893 24 C -0.176 4.176 25 C -0.150 4.150 26 C -0.191 4.191 27 C -0.209 4.209 28 C -0.050 4.050 29 H 0.282 0.718 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.181 0.819 35 H 0.150 0.850 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.158 0.842 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.851 -14.147 1.965 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.198 4.198 3 Si 0.814 3.186 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.116 0.884 9 C 0.264 3.736 10 O -0.497 6.497 11 C -0.179 4.179 12 C -0.084 4.084 13 C -0.182 4.182 14 C 0.091 3.909 15 O -0.221 6.221 16 C 0.099 3.901 17 H 0.117 0.883 18 C -0.147 4.147 19 C -0.090 4.090 20 C -0.184 4.184 21 C -0.069 4.069 22 N -0.224 5.224 23 C -0.049 4.049 24 C -0.194 4.194 25 C -0.187 4.187 26 C -0.228 4.228 27 C -0.228 4.228 28 C -0.068 4.068 29 H 0.092 0.908 30 H 0.129 0.871 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.189 0.811 34 H 0.198 0.802 35 H 0.167 0.833 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.175 0.825 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 20.664 -15.162 1.854 25.697 hybrid contribution -0.109 1.511 -0.093 1.518 sum 20.554 -13.651 1.760 24.737 Atomic orbital electron populations 1.70120 1.10104 1.29851 1.31802 1.27326 0.95489 1.05746 0.91207 0.85044 0.79176 0.74566 0.79813 1.18266 1.19543 1.16500 1.21451 0.96221 0.92120 1.47417 0.88415 1.18822 0.88192 0.88484 0.78057 1.90446 1.17327 1.89834 1.52063 1.21447 0.95640 0.96239 1.04588 1.21102 0.99726 0.91526 0.96023 1.20387 0.91526 0.98282 1.08029 1.19095 0.91279 0.84891 0.95603 1.86033 1.20618 1.27912 1.87508 1.20787 0.77782 0.97637 0.93849 0.88321 1.20633 0.99390 0.95491 0.99169 1.21793 0.94058 1.01181 0.91995 1.22488 1.02031 0.93015 1.00916 1.23380 0.91075 0.98363 0.94056 1.67745 1.13637 1.34378 1.06681 1.22626 0.97455 0.88277 0.96575 1.22605 1.05335 0.96958 0.94506 1.23137 0.92699 0.99573 1.03266 1.23162 0.99800 1.01336 0.98493 1.21332 1.00883 0.91028 1.09507 1.21359 0.92486 0.98581 0.94353 0.90805 0.87094 0.84056 0.82186 0.81140 0.80234 0.83259 0.87119 0.87322 0.86712 0.88177 0.89107 0.82489 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.09 11.73 21.89 0.26 -46.84 16 2 C 0.02 1.13 5.50 85.40 0.47 1.60 16 3 Si 1.00 38.60 29.56 68.60 2.03 40.63 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.24 -8.56 7.11 99.48 0.71 -7.85 16 7 C -0.54 -29.97 8.86 23.65 0.21 -29.76 16 8 H 0.10 4.70 6.01 -2.91 -0.02 4.69 16 9 C 0.36 21.54 6.91 25.61 0.18 21.72 16 10 O -0.60 -40.94 14.89 -4.75 -0.07 -41.01 16 11 C -0.18 -8.53 5.89 -19.99 -0.12 -8.65 16 12 C -0.07 -2.88 9.59 22.53 0.22 -2.66 16 13 C -0.16 -5.87 9.97 22.34 0.22 -5.64 16 14 C 0.14 4.32 6.28 22.71 0.14 4.46 16 15 O -0.31 -8.31 9.04 -89.79 -0.81 -9.12 16 16 C 0.16 3.15 2.24 29.85 0.07 3.22 16 17 H 0.10 1.81 5.12 -2.39 -0.01 1.80 16 18 C -0.14 -2.79 4.96 -19.77 -0.10 -2.89 16 19 C -0.06 -0.92 9.82 22.47 0.22 -0.70 16 20 C -0.17 -1.99 10.11 22.36 0.23 -1.77 16 21 C 0.09 1.37 11.18 84.69 0.95 2.32 16 22 N -0.52 -11.47 10.36 -195.84 -2.03 -13.50 16 23 C 0.11 2.39 10.53 84.67 0.89 3.28 16 24 C -0.18 -3.13 5.38 -10.79 -0.06 -3.19 16 25 C -0.15 -2.09 10.18 30.60 0.31 -1.78 16 26 C -0.19 -3.73 9.65 30.59 0.30 -3.43 16 27 C -0.21 -6.34 6.79 22.34 0.15 -6.19 16 28 C -0.05 -1.89 9.43 22.53 0.21 -1.68 16 29 H 0.28 14.98 8.29 -92.71 -0.77 14.21 16 30 H 0.11 5.22 7.65 -2.91 -0.02 5.20 16 31 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.15 3.41 7.79 -2.91 -0.02 3.39 16 36 H 0.11 1.97 8.11 -2.39 -0.02 1.95 16 37 H 0.11 1.27 8.05 -2.39 -0.02 1.25 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 2.16 5.18 -2.38 -0.01 2.15 16 41 H 0.16 3.55 5.24 -2.91 -0.02 3.53 16 42 H 0.14 4.99 6.19 -2.91 -0.02 4.97 16 Total: -1.00 -78.10 356.31 4.92 -73.18 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 1.06 Total: 28.41 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 4.49 Total: -31.76 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -1.77 Total: -60.33 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.88 Total: -50.12 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -78.10 4.92 -73.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.288 kcal (2) G-P(sol) polarization free energy of solvation -78.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds