Wall clock time and date at job start Tue Mar 31 2020 13:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86798 * 120.00091 * 2 1 4 4 H 1.48499 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46917 * 299.99543 * 3 2 1 6 6 H 1.48491 * 109.47266 * 59.99695 * 3 2 1 7 7 C 1.40347 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99362 * 180.02562 * 7 2 1 9 9 C 1.41760 * 120.00399 * 0.02562 * 7 2 1 10 10 O 1.21821 * 119.99871 * 359.97438 * 9 7 2 11 11 C 1.47573 * 119.99869 * 179.97438 * 9 7 2 12 12 C 1.39949 * 120.08977 * 180.02562 * 11 9 7 13 13 C 1.37117 * 119.90381 * 180.02562 * 12 11 9 14 14 C 1.39169 * 120.09471 * 359.97438 * 13 12 11 15 15 O 1.35657 * 119.90303 * 179.97438 * 14 13 12 16 16 C 1.42900 * 117.00298 * 354.13344 * 15 14 13 17 17 H 1.09001 * 109.46891 * 337.52786 * 16 15 14 18 18 C 1.50697 * 109.47242 * 217.52511 * 16 15 14 19 19 C 1.38671 * 120.41859 * 144.99692 * 18 16 15 20 20 C 1.38628 * 118.42191 * 179.97438 * 19 18 16 21 21 C 1.38224 * 119.15978 * 0.26354 * 20 19 18 22 22 N 1.31854 * 120.76382 * 359.49384 * 21 20 19 23 23 C 1.31882 * 121.72809 * 0.49134 * 22 21 20 24 24 C 1.52997 * 109.46658 * 97.52931 * 16 15 14 25 25 C 1.52999 * 117.50127 * 8.62157 * 24 16 15 26 26 C 1.53006 * 117.49960 * 299.99613 * 24 16 15 27 27 C 1.39157 * 120.18382 * 0.25778 * 14 13 12 28 28 C 1.37116 * 120.10074 * 359.48312 * 27 14 13 29 29 H 0.97000 * 119.99858 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.05095 * 359.97438 * 12 11 9 31 31 H 1.07999 * 119.95403 * 179.97438 * 13 12 11 32 32 H 1.08001 * 120.78561 * 359.96575 * 19 18 16 33 33 H 1.08002 * 120.41790 * 179.97438 * 20 19 18 34 34 H 1.08005 * 119.61999 * 179.74129 * 21 20 19 35 35 H 1.08000 * 119.61862 * 179.74971 * 23 22 21 36 36 H 1.09004 * 115.54817 * 154.33322 * 24 16 15 37 37 H 1.08993 * 117.49821 * 359.97438 * 25 24 16 38 38 H 1.08996 * 117.49863 * 145.02179 * 25 24 16 39 39 H 1.08996 * 117.50074 * 214.98381 * 26 24 16 40 40 H 1.08997 * 117.49647 * 359.97438 * 26 24 16 41 41 H 1.08004 * 119.94872 * 179.72291 * 27 14 13 42 42 H 1.07998 * 120.05216 * 180.25389 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6993 1.3463 -0.0006 5 1 1.8806 2.3964 -1.2126 6 1 1.8806 2.3964 1.2124 7 6 2.0070 -1.2155 0.0005 8 1 3.0870 -1.2154 0.0010 9 6 1.2982 -2.4432 0.0005 10 8 0.0800 -2.4431 0.0005 11 6 2.0361 -3.7212 0.0005 12 6 1.3383 -4.9343 0.0000 13 6 2.0278 -6.1195 0.0005 14 6 3.4194 -6.1172 0.0011 15 8 4.0977 -7.2921 0.0021 16 6 3.3251 -8.4871 0.1328 17 1 2.3688 -8.2522 0.6002 18 6 4.0724 -9.4775 0.9881 19 6 3.3856 -10.3239 1.8452 20 6 4.1144 -11.2193 2.6126 21 6 5.4922 -11.2346 2.5027 22 7 6.1118 -10.4181 1.6733 23 6 5.4509 -9.5539 0.9279 24 6 3.0815 -9.0907 -1.2518 25 6 3.8340 -8.4752 -2.4332 26 6 2.3315 -8.2341 -2.2740 27 6 4.1171 -4.9132 0.0065 28 6 3.4356 -3.7235 0.0006 29 1 -0.4850 0.8401 -0.0004 30 1 0.2583 -4.9370 0.0000 31 1 1.4901 -7.0561 0.0005 32 1 2.3084 -10.2864 1.9134 33 1 3.6124 -11.8930 3.2912 34 1 6.0677 -11.9263 3.1002 35 1 5.9933 -8.8981 0.2629 36 1 2.9065 -10.1664 -1.2716 37 1 4.5023 -7.6399 -2.2241 38 1 4.1544 -9.1459 -3.2304 39 1 1.6634 -8.7463 -2.9664 40 1 2.0112 -7.2408 -1.9598 41 1 5.1972 -4.9159 0.0114 42 1 3.9779 -2.7895 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233525458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:51 Heat of formation + Delta-G solvation = 15.133088 kcal Electronic energy + Delta-G solvation = -25940.424040 eV Core-core repulsion = 22237.868835 eV Total energy + Delta-G solvation = -3702.555205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92413 -39.80477 -37.98067 -36.46030 -35.53111 -33.21941 -32.71625 -31.94585 -30.68946 -29.54306 -27.32305 -26.63596 -23.88845 -23.05251 -22.70799 -22.49751 -22.00752 -20.24958 -19.57202 -18.02036 -17.50945 -16.81104 -16.56432 -16.18507 -15.89812 -15.49595 -14.84425 -14.73523 -14.23010 -13.98260 -13.94025 -13.65016 -13.32724 -13.23156 -13.10507 -12.76799 -12.41418 -12.28099 -12.10623 -11.77765 -11.70018 -11.53928 -11.22376 -11.12992 -10.73101 -10.57321 -10.41845 -10.36002 -10.22260 -10.01122 -9.94736 -9.58116 -9.22697 -9.01053 -8.49496 -7.51522 -7.51172 -6.33723 -4.93663 0.82418 1.01210 1.77574 1.96162 3.01859 3.10999 3.11519 3.15823 3.53254 3.77570 3.97866 3.98338 4.14068 4.42658 4.55801 4.57389 4.64232 4.73509 4.78437 4.89278 4.94107 5.04741 5.16523 5.31547 5.34212 5.39898 5.55043 5.64600 5.75916 5.78323 5.81589 5.84155 5.95255 6.03083 6.06236 6.09473 6.16065 6.28983 6.43884 6.58514 6.79056 6.99718 7.21508 7.27767 7.33681 7.71932 7.78799 8.00832 8.76219 8.81054 10.27901 10.50011 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021370 B = 0.002673 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.923780 B =10471.798981 C =10787.415781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.075 0.925 9 C 0.388 3.612 10 O -0.544 6.544 11 C -0.134 4.134 12 C -0.056 4.056 13 C -0.221 4.221 14 C 0.111 3.889 15 O -0.305 6.305 16 C 0.158 3.842 17 H 0.093 0.907 18 C -0.134 4.134 19 C -0.066 4.066 20 C -0.174 4.174 21 C 0.096 3.904 22 N -0.487 5.487 23 C 0.129 3.871 24 C -0.178 4.178 25 C -0.162 4.162 26 C -0.183 4.183 27 C -0.161 4.161 28 C -0.057 4.057 29 H 0.274 0.726 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.939 -19.485 0.910 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.093 0.907 9 C 0.284 3.716 10 O -0.434 6.434 11 C -0.135 4.135 12 C -0.074 4.074 13 C -0.240 4.240 14 C 0.067 3.933 15 O -0.219 6.219 16 C 0.100 3.900 17 H 0.111 0.889 18 C -0.136 4.136 19 C -0.092 4.092 20 C -0.194 4.194 21 C -0.061 4.061 22 N -0.195 5.195 23 C -0.027 4.027 24 C -0.196 4.196 25 C -0.199 4.199 26 C -0.220 4.220 27 C -0.180 4.180 28 C -0.075 4.075 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.310 -19.510 0.838 21.222 hybrid contribution -0.638 0.602 0.107 0.883 sum 7.672 -18.908 0.944 20.427 Atomic orbital electron populations 1.69970 1.07569 1.28019 1.30802 1.26017 0.94641 1.01058 0.92703 0.86328 0.80873 0.81284 0.78551 1.18304 1.19823 1.19831 1.20975 0.94968 0.91634 1.47164 0.90712 1.18078 0.88440 0.85867 0.79209 1.90503 1.15066 1.88536 1.49321 1.21838 0.94122 0.97784 0.99758 1.21062 1.00423 0.90968 0.94944 1.20999 0.92847 0.99023 1.11102 1.19095 0.90551 0.84954 0.98697 1.85981 1.35713 1.12025 1.88169 1.20462 0.94151 0.82204 0.93142 0.88928 1.20685 0.95907 0.98383 0.98597 1.21432 1.00728 0.93746 0.93266 1.22095 0.95702 1.00498 1.01130 1.22832 0.92174 0.96024 0.95025 1.67777 1.41019 1.04855 1.05843 1.22675 0.90953 0.93960 0.95159 1.22714 1.07801 0.98964 0.90151 1.22897 0.95239 1.03417 0.98363 1.23279 0.95175 1.02065 1.01460 1.20236 0.99670 0.89780 1.08328 1.21291 0.94120 0.96996 0.95069 0.91534 0.85505 0.85957 0.84635 0.84595 0.82781 0.82203 0.86995 0.87579 0.89005 0.88710 0.87259 0.85973 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.96 11.73 55.57 0.65 -20.31 16 2 C 0.08 2.10 5.50 -17.31 -0.10 2.01 16 3 Si 0.91 19.02 29.56 -169.99 -5.03 13.99 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.52 -13.96 8.86 -37.44 -0.33 -14.29 16 8 H 0.07 1.82 6.01 -52.48 -0.32 1.51 16 9 C 0.39 10.82 6.91 -34.43 -0.24 10.58 16 10 O -0.54 -17.11 14.89 5.08 0.08 -17.04 16 11 C -0.13 -3.06 5.89 -104.81 -0.62 -3.68 16 12 C -0.06 -1.13 9.57 -39.35 -0.38 -1.51 16 13 C -0.22 -3.66 6.72 -39.64 -0.27 -3.93 16 14 C 0.11 1.79 6.29 -38.89 -0.24 1.55 16 15 O -0.30 -4.22 7.32 -18.67 -0.14 -4.36 16 16 C 0.16 1.81 2.40 -27.89 -0.07 1.74 16 17 H 0.09 1.06 5.45 -51.93 -0.28 0.77 16 18 C -0.13 -1.45 5.00 -104.48 -0.52 -1.97 16 19 C -0.07 -0.59 9.84 -39.28 -0.39 -0.98 16 20 C -0.17 -1.40 10.11 -39.44 -0.40 -1.80 16 21 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 22 N -0.49 -5.75 10.36 -13.25 -0.14 -5.88 16 23 C 0.13 1.51 10.52 -17.55 -0.18 1.33 16 24 C -0.18 -1.84 5.69 -90.62 -0.52 -2.36 16 25 C -0.16 -1.76 9.87 -26.73 -0.26 -2.02 16 26 C -0.18 -2.05 9.65 -26.72 -0.26 -2.31 16 27 C -0.16 -2.74 9.95 -39.65 -0.39 -3.14 16 28 C -0.06 -1.11 9.41 -39.35 -0.37 -1.48 16 29 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 30 H 0.13 2.66 7.65 -52.49 -0.40 2.26 16 31 H 0.12 1.70 5.19 -52.49 -0.27 1.43 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.16 1.83 7.64 -52.49 -0.40 1.43 16 36 H 0.11 1.02 8.11 -51.93 -0.42 0.60 16 37 H 0.11 1.30 7.06 -51.93 -0.37 0.93 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.11 1.45 5.08 -51.93 -0.26 1.19 16 41 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.14 2.56 6.19 -52.49 -0.33 2.24 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -32.77 353.72 -9.69 -42.46 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.72 Total: 7.37 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -5.73 Total: -21.56 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.51 Total: -26.19 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.39 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.77 -9.69 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.593 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds