Wall clock time and date at job start Tue Mar 31 2020 14:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34693 * 117.00209 * 2 1 4 4 O 1.21449 * 120.00114 * 359.97438 * 3 2 1 5 5 C 1.47963 * 120.00397 * 179.97438 * 3 2 1 6 6 N 1.33506 * 120.57473 * 357.32586 * 5 3 2 7 7 C 1.31344 * 120.93861 * 180.02562 * 6 5 3 8 8 C 1.50694 * 118.91261 * 179.97438 * 7 6 5 9 9 N 1.32035 * 122.17011 * 0.02562 * 7 6 5 10 10 C 1.32404 * 121.04653 * 359.97438 * 9 7 6 11 11 O 1.35560 * 120.53226 * 180.02562 * 10 9 7 12 12 C 1.39719 * 120.57780 * 177.63267 * 5 3 2 13 13 O 1.35687 * 120.97431 * 359.97438 * 12 5 3 14 14 C 1.42907 * 116.99832 * 94.15348 * 13 12 5 15 15 H 1.09000 * 110.64142 * 330.98922 * 14 13 12 16 16 C 1.55154 * 110.72002 * 207.84876 * 14 13 12 17 17 C 1.54909 * 101.58067 * 206.13704 * 16 14 13 18 18 N 1.47423 * 104.83587 * 37.00563 * 17 16 14 19 19 C 1.36934 * 125.65354 * 155.83422 * 18 17 16 20 20 H 1.08000 * 119.99749 * 325.38754 * 19 18 17 21 21 C 1.38808 * 120.00188 * 145.38157 * 19 18 17 22 22 N 1.31620 * 120.00321 * 159.69120 * 21 19 18 23 23 Si 1.86803 * 119.99985 * 339.68834 * 21 19 18 24 24 H 1.48501 * 109.47360 * 90.46753 * 23 21 19 25 25 H 1.48502 * 109.47204 * 210.46886 * 23 21 19 26 26 H 1.48504 * 109.47193 * 330.46644 * 23 21 19 27 27 C 1.47026 * 108.70328 * 335.87582 * 18 17 16 28 28 H 1.09000 * 109.47546 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47672 * 300.00579 * 1 2 3 30 30 H 1.09009 * 109.47178 * 60.00522 * 1 2 3 31 31 H 1.09002 * 109.47351 * 270.02428 * 8 7 6 32 32 H 1.08995 * 109.47532 * 30.02298 * 8 7 6 33 33 H 1.09000 * 109.47338 * 150.02723 * 8 7 6 34 34 H 0.96702 * 113.99793 * 90.00188 * 11 10 9 35 35 H 1.09005 * 111.00462 * 324.20819 * 16 14 13 36 36 H 1.08998 * 111.00642 * 88.05930 * 16 14 13 37 37 H 1.08995 * 110.37029 * 155.84631 * 17 16 14 38 38 H 1.09003 * 110.36599 * 278.05906 * 17 16 14 39 39 H 0.97002 * 120.00156 * 180.02562 * 22 21 19 40 40 H 1.08994 * 109.88651 * 241.64354 * 27 18 17 41 41 H 1.09001 * 109.88519 * 120.46943 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4021 2.2187 -0.0005 5 6 3.5411 1.2776 0.0006 6 7 4.2793 0.1665 0.0547 7 6 5.5914 0.2270 0.0561 8 6 6.3798 -1.0557 0.1190 9 7 6.2423 1.3747 0.0052 10 6 5.5920 2.5266 -0.0505 11 8 6.2708 3.6989 -0.1030 12 6 4.1879 2.5150 -0.0491 13 8 3.4801 3.6715 -0.0994 14 6 3.2165 4.3254 1.1436 15 1 3.1631 3.6002 1.9556 16 6 1.9076 5.1544 1.0611 17 6 2.1610 6.2433 2.1335 18 7 3.5975 6.5555 2.0223 19 6 4.1909 7.7294 2.4030 20 1 3.6603 8.6635 2.2919 21 6 5.4743 7.7188 2.9317 22 7 6.1972 8.8187 2.9269 23 14 6.1754 6.1435 3.6503 24 1 6.8855 5.3877 2.5874 25 1 7.1271 6.4773 4.7403 26 1 5.0710 5.3132 4.1945 27 6 4.2874 5.3981 1.4340 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 6.5662 -1.3169 1.1607 32 1 5.8134 -1.8542 -0.3600 33 1 7.3302 -0.9238 -0.3981 34 1 6.4705 3.9978 -1.0006 35 1 1.7885 5.5994 0.0732 36 1 1.0420 4.5448 1.3202 37 1 1.5627 7.1297 1.9229 38 1 1.9306 5.8582 3.1269 39 1 7.0942 8.8112 3.2961 40 1 5.0221 5.0073 2.1380 41 1 4.7791 5.6916 0.5066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234563948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:48 Heat of formation + Delta-G solvation = -62.171148 kcal Electronic energy + Delta-G solvation = -28566.044883 eV Core-core repulsion = 24449.288252 eV Total energy + Delta-G solvation = -4116.756631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86097 -40.31961 -39.05199 -37.77369 -36.85143 -36.32571 -33.82164 -32.58525 -32.11167 -29.77931 -28.56051 -28.29720 -27.50256 -25.68294 -24.28278 -23.27429 -21.64199 -20.84641 -20.32085 -19.29953 -19.06168 -17.99126 -17.33875 -17.00196 -16.99721 -16.73074 -16.00035 -15.74395 -14.97688 -14.72732 -14.28815 -14.11652 -13.83067 -13.55821 -13.11652 -12.98825 -12.81266 -12.80722 -12.59494 -12.42363 -12.41093 -12.34307 -11.85505 -11.51254 -11.15821 -11.07389 -11.03773 -11.00520 -10.92993 -10.56086 -10.48468 -10.20979 -9.95474 -9.54310 -9.31263 -9.18020 -8.52113 -6.85306 -5.99578 -3.40313 -0.07365 0.36004 2.09040 2.13258 2.98071 3.02697 3.40293 3.44091 3.48201 3.51877 3.55759 4.01742 4.42279 4.54404 4.60705 4.84912 4.86647 4.94400 4.95221 5.15136 5.24813 5.25735 5.31486 5.35939 5.37164 5.39287 5.47933 5.81406 5.92129 5.96533 6.06696 6.26031 6.33952 6.44761 6.56669 6.70114 6.81327 7.14441 7.37126 7.39074 7.63050 7.88136 8.32938 8.84005 9.66728 10.22157 11.16525 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.005012 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.186075 B = 5585.778745 C = 7113.292537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.336 6.336 3 C 0.519 3.481 4 O -0.458 6.458 5 C 0.130 3.870 6 N -0.468 5.468 7 C 0.327 3.673 8 C -0.083 4.083 9 N -0.505 5.505 10 C 0.359 3.641 11 O -0.450 6.450 12 C 0.049 3.951 13 O -0.293 6.293 14 C 0.089 3.911 15 H 0.062 0.938 16 C -0.114 4.114 17 C 0.127 3.873 18 N -0.605 5.605 19 C -0.249 4.249 20 H 0.087 0.913 21 C 0.038 3.962 22 N -0.902 5.902 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.300 1.300 26 H -0.278 1.278 27 C 0.111 3.889 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.414 0.586 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.025 0.975 39 H 0.264 0.736 40 H 0.027 0.973 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 -21.685 -8.594 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.251 6.251 3 C 0.359 3.641 4 O -0.341 6.341 5 C -0.014 4.014 6 N -0.188 5.188 7 C 0.059 3.941 8 C -0.141 4.141 9 N -0.233 5.233 10 C 0.167 3.833 11 O -0.258 6.258 12 C -0.003 4.003 13 O -0.206 6.206 14 C 0.034 3.966 15 H 0.081 0.919 16 C -0.152 4.152 17 C 0.002 3.998 18 N -0.334 5.334 19 C -0.376 4.376 20 H 0.104 0.896 21 C -0.163 4.163 22 N -0.543 5.543 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.228 1.228 26 H -0.204 1.204 27 C -0.014 4.014 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.275 0.725 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.914 -21.829 -8.049 24.006 hybrid contribution 0.146 0.011 0.192 0.241 sum -5.767 -21.819 -7.857 23.897 Atomic orbital electron populations 1.23374 0.75643 1.04011 1.02905 1.86652 1.23472 1.31325 1.83672 1.20344 0.86976 0.82320 0.74488 1.90960 1.64981 1.35592 1.42569 1.20899 0.92325 0.88770 0.99390 1.68288 1.07708 1.30036 1.12783 1.23082 0.86415 0.93331 0.91222 1.20627 0.99128 0.89899 1.04456 1.67788 1.43055 0.98131 1.14331 1.20097 0.86230 0.86194 0.90787 1.84884 1.75597 1.31381 1.33930 1.20688 0.90640 0.88208 1.00800 1.86052 1.70837 1.32120 1.31585 1.23589 0.97610 0.93152 0.82238 0.91939 1.22807 0.94504 0.96688 1.01236 1.21762 0.87670 0.95493 0.94877 1.44544 1.02740 1.14223 1.71890 1.18552 0.99187 0.83557 1.36325 0.89602 1.25352 0.97060 0.96251 0.97648 1.69827 1.09924 1.27716 1.46876 0.86890 0.78301 0.84603 0.79370 1.20275 1.22834 1.20390 1.21997 0.93550 0.88168 0.97720 0.87720 0.91543 0.91557 0.89108 0.88971 0.89076 0.72474 0.90017 0.90650 0.92557 0.95696 0.92577 0.95546 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.34 -4.03 10.42 -40.47 -0.42 -4.45 16 3 C 0.52 7.42 7.95 34.72 0.28 7.69 16 4 O -0.46 -7.21 14.27 -26.38 -0.38 -7.59 16 5 C 0.13 1.94 6.80 -82.60 -0.56 1.38 16 6 N -0.47 -6.33 10.13 -7.35 -0.07 -6.41 16 7 C 0.33 4.06 7.64 -157.38 -1.20 2.86 16 8 C -0.08 -0.64 10.31 36.00 0.37 -0.27 16 9 N -0.51 -7.22 10.33 -10.64 -0.11 -7.33 16 10 C 0.36 5.57 7.86 -16.49 -0.13 5.44 16 11 O -0.45 -6.99 12.10 -30.62 -0.37 -7.37 16 12 C 0.05 0.79 5.70 -38.21 -0.22 0.57 16 13 O -0.29 -5.19 8.07 -46.40 -0.37 -5.57 16 14 C 0.09 1.72 2.94 -24.90 -0.07 1.65 16 15 H 0.06 1.20 7.95 -51.93 -0.41 0.79 16 16 C -0.11 -2.05 6.55 -24.58 -0.16 -2.21 16 17 C 0.13 2.63 7.23 -2.53 -0.02 2.62 16 18 N -0.61 -15.32 2.95 -170.07 -0.50 -15.82 16 19 C -0.25 -7.25 10.48 -15.06 -0.16 -7.41 16 20 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 21 C 0.04 1.12 5.43 -17.43 -0.09 1.03 16 22 N -0.90 -28.10 13.97 55.49 0.78 -27.33 16 23 Si 0.88 23.57 24.78 -169.99 -4.21 19.36 16 24 H -0.28 -7.32 6.92 56.52 0.39 -6.93 16 25 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 26 H -0.28 -7.44 7.09 56.52 0.40 -7.04 16 27 C 0.11 2.56 5.04 -3.06 -0.02 2.54 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.41 4.13 9.06 45.56 0.41 4.55 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 40 H 0.03 0.68 3.73 -51.93 -0.19 0.48 16 41 H 0.06 1.32 7.56 -51.93 -0.39 0.93 16 LS Contribution 348.61 15.07 5.25 5.25 Total: -1.00 -36.07 348.61 -5.71 -41.78 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.38 Total: -1.76 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: -0.92 Total: 17.22 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.09 Total: -56.88 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -1.54 Total: -24.97 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.21 Total: 19.36 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.07 -5.71 -41.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234563948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.392 kcal (2) G-P(sol) polarization free energy of solvation -36.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds