Wall clock time and date at job start Tue Mar 31 2020 14:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34693 * 117.00209 * 2 1 4 4 O 1.21449 * 120.00114 * 359.97438 * 3 2 1 5 5 C 1.47963 * 120.00397 * 179.97438 * 3 2 1 6 6 N 1.33506 * 120.57473 * 357.32586 * 5 3 2 7 7 C 1.31344 * 120.93861 * 180.02562 * 6 5 3 8 8 C 1.50694 * 118.91261 * 179.97438 * 7 6 5 9 9 N 1.32035 * 122.17011 * 0.02562 * 7 6 5 10 10 C 1.32404 * 121.04653 * 359.97438 * 9 7 6 11 11 O 1.35560 * 120.53226 * 180.02562 * 10 9 7 12 12 C 1.39719 * 120.57780 * 177.63267 * 5 3 2 13 13 O 1.35687 * 120.97431 * 359.97438 * 12 5 3 14 14 C 1.42907 * 116.99832 * 94.15348 * 13 12 5 15 15 H 1.09000 * 110.64142 * 330.98922 * 14 13 12 16 16 C 1.55154 * 110.72002 * 207.84876 * 14 13 12 17 17 C 1.54909 * 101.58067 * 206.13704 * 16 14 13 18 18 N 1.47423 * 104.83587 * 37.00563 * 17 16 14 19 19 C 1.36934 * 125.65354 * 155.83422 * 18 17 16 20 20 H 1.08000 * 119.99749 * 325.38754 * 19 18 17 21 21 C 1.38808 * 120.00188 * 145.38157 * 19 18 17 22 22 N 1.31620 * 120.00321 * 159.69120 * 21 19 18 23 23 Si 1.86803 * 119.99985 * 339.68834 * 21 19 18 24 24 H 1.48501 * 109.47360 * 90.46753 * 23 21 19 25 25 H 1.48502 * 109.47204 * 210.46886 * 23 21 19 26 26 H 1.48504 * 109.47193 * 330.46644 * 23 21 19 27 27 C 1.47026 * 108.70328 * 335.87582 * 18 17 16 28 28 H 1.09000 * 109.47546 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47672 * 300.00579 * 1 2 3 30 30 H 1.09009 * 109.47178 * 60.00522 * 1 2 3 31 31 H 1.09002 * 109.47351 * 270.02428 * 8 7 6 32 32 H 1.08995 * 109.47532 * 30.02298 * 8 7 6 33 33 H 1.09000 * 109.47338 * 150.02723 * 8 7 6 34 34 H 0.96702 * 113.99793 * 90.00188 * 11 10 9 35 35 H 1.09005 * 111.00462 * 324.20819 * 16 14 13 36 36 H 1.08998 * 111.00642 * 88.05930 * 16 14 13 37 37 H 1.08995 * 110.37029 * 155.84631 * 17 16 14 38 38 H 1.09003 * 110.36599 * 278.05906 * 17 16 14 39 39 H 0.97002 * 120.00156 * 180.02562 * 22 21 19 40 40 H 1.08994 * 109.88651 * 241.64354 * 27 18 17 41 41 H 1.09001 * 109.88519 * 120.46943 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4021 2.2187 -0.0005 5 6 3.5411 1.2776 0.0006 6 7 4.2793 0.1665 0.0547 7 6 5.5914 0.2270 0.0561 8 6 6.3798 -1.0557 0.1190 9 7 6.2423 1.3747 0.0052 10 6 5.5920 2.5266 -0.0505 11 8 6.2708 3.6989 -0.1030 12 6 4.1879 2.5150 -0.0491 13 8 3.4801 3.6715 -0.0994 14 6 3.2165 4.3254 1.1436 15 1 3.1631 3.6002 1.9556 16 6 1.9076 5.1544 1.0611 17 6 2.1610 6.2433 2.1335 18 7 3.5975 6.5555 2.0223 19 6 4.1909 7.7294 2.4030 20 1 3.6603 8.6635 2.2919 21 6 5.4743 7.7188 2.9317 22 7 6.1972 8.8187 2.9269 23 14 6.1754 6.1435 3.6503 24 1 6.8855 5.3877 2.5874 25 1 7.1271 6.4773 4.7403 26 1 5.0710 5.3132 4.1945 27 6 4.2874 5.3981 1.4340 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 6.5662 -1.3169 1.1607 32 1 5.8134 -1.8542 -0.3600 33 1 7.3302 -0.9238 -0.3981 34 1 6.4705 3.9978 -1.0006 35 1 1.7885 5.5994 0.0732 36 1 1.0420 4.5448 1.3202 37 1 1.5627 7.1297 1.9229 38 1 1.9306 5.8582 3.1269 39 1 7.0942 8.8112 3.2961 40 1 5.0221 5.0073 2.1380 41 1 4.7791 5.6916 0.5066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234563948.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:48 Heat of formation + Delta-G solvation = -90.386551 kcal Electronic energy + Delta-G solvation = -28567.268395 eV Core-core repulsion = 24449.288252 eV Total energy + Delta-G solvation = -4117.980143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.95436 -41.32307 -40.44321 -38.95326 -38.26350 -37.51327 -34.93693 -34.54368 -33.27590 -31.60967 -29.81260 -29.27268 -28.72129 -26.72513 -26.20307 -24.37888 -22.82135 -22.32474 -22.06024 -20.37867 -20.16428 -19.32725 -19.04431 -18.44552 -17.98663 -17.84646 -17.60412 -17.03056 -16.30778 -16.06808 -15.73416 -15.22351 -15.08733 -14.71422 -14.58614 -14.55010 -14.37680 -14.14846 -14.07181 -13.48496 -13.32233 -13.25779 -13.08781 -13.02539 -12.97983 -12.51924 -12.41791 -12.35782 -12.08484 -12.01449 -11.88657 -11.85753 -11.66693 -11.42177 -10.77531 -10.49782 -10.37842 -8.92949 -8.29869 -5.67076 -1.18461 -0.73547 1.06278 1.15319 1.26055 1.27976 1.37988 1.84738 1.93510 2.32877 2.39643 2.51383 2.91454 2.98638 3.28469 3.34035 3.58872 3.62493 3.72149 3.82978 3.95498 4.27571 4.34836 4.36086 4.41618 4.52654 4.65469 4.71119 4.71579 4.76015 4.87277 4.92090 4.95138 5.06192 5.18161 5.21060 5.26566 5.74730 5.95135 6.07211 6.24626 6.37693 6.59338 6.70042 7.43042 8.06881 8.90424 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.005012 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.186075 B = 5585.778745 C = 7113.292537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.337 6.337 3 C 0.520 3.480 4 O -0.477 6.477 5 C 0.135 3.865 6 N -0.469 5.469 7 C 0.331 3.669 8 C -0.082 4.082 9 N -0.516 5.516 10 C 0.359 3.641 11 O -0.471 6.471 12 C 0.018 3.982 13 O -0.293 6.293 14 C 0.100 3.900 15 H 0.065 0.935 16 C -0.097 4.097 17 C 0.122 3.878 18 N -0.624 5.624 19 C -0.244 4.244 20 H 0.059 0.941 21 C -0.010 4.010 22 N -0.942 5.942 23 Si 0.937 3.063 24 H -0.274 1.274 25 H -0.300 1.300 26 H -0.276 1.276 27 C 0.112 3.888 28 H 0.138 0.862 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.432 0.568 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.266 0.734 40 H 0.008 0.992 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.001 -25.028 -8.912 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.252 6.252 3 C 0.360 3.640 4 O -0.362 6.362 5 C -0.010 4.010 6 N -0.190 5.190 7 C 0.065 3.935 8 C -0.140 4.140 9 N -0.244 5.244 10 C 0.167 3.833 11 O -0.282 6.282 12 C -0.034 4.034 13 O -0.206 6.206 14 C 0.044 3.956 15 H 0.083 0.917 16 C -0.135 4.135 17 C -0.002 4.002 18 N -0.352 5.352 19 C -0.372 4.372 20 H 0.076 0.924 21 C -0.208 4.208 22 N -0.587 5.587 23 Si 0.766 3.234 24 H -0.201 1.201 25 H -0.227 1.227 26 H -0.202 1.202 27 C -0.013 4.013 28 H 0.156 0.844 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.297 0.703 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.026 0.974 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.756 -25.217 -8.394 27.423 hybrid contribution 0.350 0.946 0.209 1.030 sum -6.406 -24.272 -8.184 26.403 Atomic orbital electron populations 1.23741 0.73357 1.06342 1.03160 1.86643 1.25651 1.29968 1.82958 1.20302 0.86755 0.82744 0.74164 1.90934 1.65295 1.36323 1.43634 1.21066 0.93063 0.88661 0.98209 1.68437 1.08115 1.29208 1.13197 1.24069 0.86472 0.94262 0.88702 1.20879 0.99338 0.87933 1.05837 1.67919 1.43118 0.98268 1.15089 1.20171 0.86199 0.86516 0.90457 1.84815 1.75677 1.31859 1.35897 1.20787 0.90852 0.88032 1.03744 1.86060 1.71115 1.32933 1.30477 1.23317 0.96442 0.92400 0.83406 0.91668 1.22703 0.94798 0.95698 1.00306 1.21946 0.84978 0.96889 0.96408 1.44676 1.04824 1.13707 1.72039 1.18500 0.99067 0.84357 1.35313 0.92353 1.25856 0.97647 0.98718 0.98543 1.69921 1.10516 1.29614 1.48635 0.85953 0.77576 0.81340 0.78513 1.20070 1.22748 1.20216 1.21960 0.94380 0.88526 0.96431 0.84390 0.91404 0.91217 0.87542 0.87006 0.87682 0.70315 0.89828 0.87974 0.91915 0.94787 0.92472 0.97400 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.34 -7.27 10.42 -56.02 -0.58 -7.86 16 3 C 0.52 13.91 7.95 70.40 0.56 14.47 16 4 O -0.48 -14.16 14.27 26.84 0.38 -13.78 16 5 C 0.13 3.80 6.80 41.83 0.28 4.09 16 6 N -0.47 -11.67 10.13 -177.17 -1.80 -13.47 16 7 C 0.33 7.46 7.64 138.81 1.06 8.52 16 8 C -0.08 -1.00 10.31 71.23 0.73 -0.27 16 9 N -0.52 -13.94 10.33 -300.43 -3.10 -17.04 16 10 C 0.36 10.84 7.86 85.14 0.67 11.51 16 11 O -0.47 -14.56 12.10 -76.96 -0.93 -15.49 16 12 C 0.02 0.55 5.70 23.16 0.13 0.68 16 13 O -0.29 -10.13 8.07 -63.64 -0.51 -10.64 16 14 C 0.10 3.74 2.94 31.78 0.09 3.84 16 15 H 0.07 2.40 7.95 -2.39 -0.02 2.39 16 16 C -0.10 -3.31 6.55 31.99 0.21 -3.10 16 17 C 0.12 4.91 7.23 86.86 0.63 5.54 16 18 N -0.62 -31.56 2.95 -691.99 -2.04 -33.60 16 19 C -0.24 -14.47 10.48 84.03 0.88 -13.59 16 20 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 21 C -0.01 -0.63 5.43 84.86 0.46 -0.17 16 22 N -0.94 -60.12 13.97 21.65 0.30 -59.82 16 23 Si 0.94 49.56 24.78 68.60 1.70 51.26 16 24 H -0.27 -14.27 6.92 99.48 0.69 -13.58 16 25 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 26 H -0.28 -14.38 7.09 99.48 0.71 -13.67 16 27 C 0.11 5.15 5.04 86.73 0.44 5.59 16 28 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.43 8.67 9.06 -74.06 -0.67 8.00 16 35 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 36 H 0.10 2.98 8.05 -2.39 -0.02 2.96 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 40 H 0.01 0.42 3.73 -2.39 -0.01 0.41 16 41 H 0.04 2.14 7.56 -2.39 -0.02 2.12 16 Total: -1.00 -78.07 348.61 1.16 -76.91 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 0.40 Total: 4.86 kcal Atomic # 6 Polarization: 31.31 SS G_CDS: 7.35 Total: 38.66 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -6.64 Total: -123.93 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -1.65 Total: -47.77 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 1.70 Total: 51.26 kcal Total: -78.07 1.16 -76.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234563948.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.474 kcal (2) G-P(sol) polarization free energy of solvation -78.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds