Wall clock time and date at job start Tue Mar 31 2020 14:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34697 * 117.00479 * 2 1 4 4 O 1.21441 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.47959 * 120.00201 * 179.97438 * 3 2 1 6 6 N 1.33512 * 120.57472 * 359.97438 * 5 3 2 7 7 C 1.31343 * 120.93490 * 180.02562 * 6 5 3 8 8 C 1.50701 * 118.91022 * 179.97438 * 7 6 5 9 9 N 1.32043 * 122.17478 * 0.02949 * 7 6 5 10 10 C 1.32401 * 121.04046 * 359.97320 * 9 7 6 11 11 O 1.35565 * 120.52744 * 180.02562 * 10 9 7 12 12 C 1.39717 * 120.57797 * 180.30240 * 5 3 2 13 13 O 1.35694 * 120.96964 * 0.02562 * 12 5 3 14 14 C 1.42901 * 116.99947 * 270.22138 * 13 12 5 15 15 H 1.08999 * 110.63718 * 31.68884 * 14 13 12 16 16 C 1.55156 * 110.71901 * 155.02457 * 14 13 12 17 17 C 1.54912 * 101.58022 * 153.86471 * 16 14 13 18 18 N 1.47430 * 104.83126 * 322.98993 * 17 16 14 19 19 C 1.36929 * 125.64707 * 204.09025 * 18 17 16 20 20 H 1.08000 * 120.00234 * 180.02562 * 19 18 17 21 21 C 1.38819 * 120.00147 * 0.04323 * 19 18 17 22 22 N 1.31613 * 119.99888 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00032 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47230 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47211 * 120.00030 * 23 21 19 26 26 H 1.48500 * 109.47156 * 240.00048 * 23 21 19 27 27 C 1.47021 * 108.70146 * 24.12875 * 18 17 16 28 28 H 1.09005 * 109.47249 * 300.00355 * 1 2 3 29 29 H 1.09006 * 109.46819 * 59.99661 * 1 2 3 30 30 H 1.08999 * 109.47903 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47640 * 270.02652 * 8 7 6 32 32 H 1.09002 * 109.47285 * 30.03039 * 8 7 6 33 33 H 1.09004 * 109.46595 * 150.02687 * 8 7 6 34 34 H 0.96701 * 113.99678 * 90.00553 * 11 10 9 35 35 H 1.09000 * 111.00492 * 271.93544 * 16 14 13 36 36 H 1.08999 * 111.00686 * 35.79583 * 16 14 13 37 37 H 1.08997 * 110.36754 * 204.15391 * 17 16 14 38 38 H 1.09006 * 110.36595 * 81.82995 * 17 16 14 39 39 H 0.96999 * 120.00469 * 180.02562 * 22 21 19 40 40 H 1.09000 * 109.88250 * 239.51728 * 27 18 17 41 41 H 1.09005 * 109.88152 * 118.35657 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2001 0.0000 4 8 1.4022 2.2186 -0.0005 5 6 3.5411 1.2775 0.0006 6 7 4.2794 0.1651 0.0016 7 6 5.5915 0.2255 0.0026 8 6 6.3799 -1.0588 0.0044 9 7 6.2424 1.3743 0.0033 10 6 5.5920 2.5276 0.0024 11 8 6.2709 3.7010 0.0025 12 6 4.1880 2.5158 0.0069 13 8 3.4800 3.6734 0.0132 14 6 3.1370 4.2310 -1.2570 15 1 2.9898 3.4429 -1.9954 16 6 1.8731 5.1235 -1.1415 17 6 2.0761 6.1046 -2.3230 18 7 3.5280 6.3586 -2.3574 19 6 4.1318 7.4667 -2.8887 20 1 5.2076 7.5591 -2.8652 21 6 3.3613 8.4717 -3.4574 22 7 2.0502 8.3596 -3.4853 23 14 4.1850 9.9837 -4.1816 24 1 5.6573 9.8680 -4.0253 25 1 3.8476 10.0882 -5.6241 26 1 3.7052 11.1967 -3.4719 27 6 4.2200 5.2247 -1.7275 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 6.5688 -1.3679 1.0323 32 1 5.8123 -1.8344 -0.5098 33 1 7.3291 -0.9030 -0.5085 34 1 6.4685 4.0411 -0.8809 35 1 0.9655 4.5346 -1.2742 36 1 1.8561 5.6556 -0.1904 37 1 1.5329 7.0323 -2.1434 38 1 1.7488 5.6470 -3.2566 39 1 1.5117 9.0616 -3.8829 40 1 4.8001 5.5728 -0.8729 41 1 4.8762 4.7422 -2.4518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234563949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:51 Heat of formation + Delta-G solvation = -64.487792 kcal Electronic energy + Delta-G solvation = -28197.557935 eV Core-core repulsion = 24080.700846 eV Total energy + Delta-G solvation = -4116.857089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82965 -40.25220 -38.96551 -37.73009 -36.71571 -36.20095 -33.78590 -32.60659 -31.97300 -29.40607 -28.47926 -28.12271 -27.12631 -25.63591 -24.51332 -23.25464 -21.57047 -20.49885 -20.30010 -19.24330 -19.04661 -17.86449 -17.41113 -16.94095 -16.89983 -16.64687 -15.95430 -14.98937 -14.87318 -14.62075 -14.48333 -14.24053 -13.77153 -13.52603 -13.28864 -13.00253 -12.79272 -12.51725 -12.50806 -12.43691 -12.27742 -11.77769 -11.63333 -11.27943 -11.04255 -10.96709 -10.96686 -10.90253 -10.84429 -10.54099 -10.21624 -10.07196 -9.88853 -9.64523 -9.30379 -9.15898 -8.72392 -6.93930 -5.72307 -3.15518 -0.02646 0.40591 2.14093 2.20693 2.94378 3.21798 3.36564 3.41755 3.44447 3.47044 3.50627 4.03579 4.42866 4.45258 4.69078 4.90657 4.93355 5.02632 5.17220 5.26467 5.29051 5.31582 5.38261 5.41513 5.45227 5.58051 5.68854 5.85551 6.04924 6.22508 6.27490 6.35904 6.46497 6.54197 6.64929 7.08948 7.40414 7.43276 7.48280 7.54781 7.66500 7.77786 8.27270 9.13176 9.73720 10.36649 11.31715 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003809 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.561504 B = 7348.319235 C = 8828.680521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.336 6.336 3 C 0.516 3.484 4 O -0.455 6.455 5 C 0.129 3.871 6 N -0.466 5.466 7 C 0.324 3.676 8 C -0.082 4.082 9 N -0.505 5.505 10 C 0.357 3.643 11 O -0.456 6.456 12 C 0.054 3.946 13 O -0.291 6.291 14 C 0.087 3.913 15 H 0.062 0.938 16 C -0.125 4.125 17 C 0.151 3.849 18 N -0.598 5.598 19 C -0.226 4.226 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.917 3.083 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.111 3.889 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.413 0.587 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.015 0.985 39 H 0.253 0.747 40 H 0.045 0.955 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 -19.810 6.476 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.252 6.252 3 C 0.356 3.644 4 O -0.338 6.338 5 C -0.015 4.015 6 N -0.186 5.186 7 C 0.057 3.943 8 C -0.140 4.140 9 N -0.233 5.233 10 C 0.165 3.835 11 O -0.264 6.264 12 C 0.002 3.998 13 O -0.204 6.204 14 C 0.032 3.968 15 H 0.080 0.920 16 C -0.164 4.164 17 C 0.026 3.974 18 N -0.326 5.326 19 C -0.354 4.354 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.747 3.253 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.015 4.015 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.275 0.725 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.251 -19.947 7.100 21.292 hybrid contribution -0.071 1.604 -0.998 1.890 sum 2.180 -18.343 6.102 19.454 Atomic orbital electron populations 1.23376 0.75633 1.03960 1.02979 1.86642 1.23478 1.31340 1.83739 1.20359 0.87012 0.82362 0.74671 1.90988 1.64949 1.35536 1.42296 1.20929 0.92335 0.88690 0.99579 1.68281 1.07691 1.30077 1.12584 1.23064 0.86433 0.93285 0.91556 1.20614 0.99138 0.89920 1.04357 1.67768 1.43042 0.98122 1.14325 1.19945 0.86225 0.86158 0.91177 1.84780 1.75705 1.31326 1.34612 1.20635 0.90843 0.88177 1.00181 1.86178 1.70451 1.33120 1.30637 1.23705 0.97548 0.94373 0.81183 0.92005 1.23121 0.94151 0.97045 1.02059 1.22041 0.85710 0.98044 0.91561 1.44359 1.01982 1.17603 1.68635 1.19116 0.91416 0.94252 1.30621 0.90253 1.24809 0.95631 0.98900 1.01106 1.69775 1.03209 1.33908 1.49995 0.85970 0.78299 0.82581 0.78444 1.20455 1.21706 1.21602 1.21834 0.94006 0.89737 0.95959 0.91566 0.91481 0.87750 0.89170 0.89016 0.89139 0.72529 0.91168 0.90784 0.86812 0.96706 0.93600 0.93750 0.96557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.34 -4.23 10.42 -40.48 -0.42 -4.65 16 3 C 0.52 7.70 7.96 34.71 0.28 7.98 16 4 O -0.45 -7.66 13.99 -26.38 -0.37 -8.03 16 5 C 0.13 1.94 6.79 -82.60 -0.56 1.37 16 6 N -0.47 -6.26 10.13 -7.35 -0.07 -6.34 16 7 C 0.32 3.89 7.64 -157.37 -1.20 2.69 16 8 C -0.08 -0.60 10.31 36.01 0.37 -0.23 16 9 N -0.50 -6.81 10.33 -10.64 -0.11 -6.92 16 10 C 0.36 5.28 7.86 -16.49 -0.13 5.15 16 11 O -0.46 -6.46 12.52 -30.62 -0.38 -6.84 16 12 C 0.05 0.86 5.71 -38.21 -0.22 0.65 16 13 O -0.29 -5.30 8.17 -46.42 -0.38 -5.67 16 14 C 0.09 1.64 2.67 -24.90 -0.07 1.58 16 15 H 0.06 1.14 7.97 -51.93 -0.41 0.72 16 16 C -0.13 -2.56 6.56 -24.58 -0.16 -2.72 16 17 C 0.15 3.70 5.89 -2.52 -0.01 3.68 16 18 N -0.60 -15.25 3.39 -170.06 -0.58 -15.82 16 19 C -0.23 -6.20 10.27 -15.06 -0.15 -6.36 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -26.52 10.09 55.49 0.56 -25.96 16 23 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.11 2.29 5.95 -3.07 -0.02 2.27 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.41 4.54 7.99 45.56 0.36 4.90 16 35 H 0.07 1.34 7.97 -51.93 -0.41 0.93 16 36 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.11 3.11 5.87 -51.93 -0.30 2.80 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.04 0.91 7.26 -51.93 -0.38 0.54 16 41 H 0.02 0.32 8.04 -51.93 -0.42 -0.10 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -33.14 349.95 -6.90 -40.05 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.49 Total: 1.09 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: -0.91 Total: 17.08 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.20 Total: -55.05 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -1.55 Total: -25.20 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.14 -6.90 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234563949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.440 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds