Wall clock time and date at job start Tue Mar 31 2020 14:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34697 * 117.00479 * 2 1 4 4 O 1.21441 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.47959 * 120.00201 * 179.97438 * 3 2 1 6 6 N 1.33512 * 120.57472 * 359.97438 * 5 3 2 7 7 C 1.31343 * 120.93490 * 180.02562 * 6 5 3 8 8 C 1.50701 * 118.91022 * 179.97438 * 7 6 5 9 9 N 1.32043 * 122.17478 * 0.02949 * 7 6 5 10 10 C 1.32401 * 121.04046 * 359.97320 * 9 7 6 11 11 O 1.35565 * 120.52744 * 180.02562 * 10 9 7 12 12 C 1.39717 * 120.57797 * 180.30240 * 5 3 2 13 13 O 1.35694 * 120.96964 * 0.02562 * 12 5 3 14 14 C 1.42901 * 116.99947 * 270.22138 * 13 12 5 15 15 H 1.08999 * 110.63718 * 31.68884 * 14 13 12 16 16 C 1.55156 * 110.71901 * 155.02457 * 14 13 12 17 17 C 1.54912 * 101.58022 * 153.86471 * 16 14 13 18 18 N 1.47430 * 104.83126 * 322.98993 * 17 16 14 19 19 C 1.36929 * 125.64707 * 204.09025 * 18 17 16 20 20 H 1.08000 * 120.00234 * 180.02562 * 19 18 17 21 21 C 1.38819 * 120.00147 * 0.04323 * 19 18 17 22 22 N 1.31613 * 119.99888 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00032 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47230 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47211 * 120.00030 * 23 21 19 26 26 H 1.48500 * 109.47156 * 240.00048 * 23 21 19 27 27 C 1.47021 * 108.70146 * 24.12875 * 18 17 16 28 28 H 1.09005 * 109.47249 * 300.00355 * 1 2 3 29 29 H 1.09006 * 109.46819 * 59.99661 * 1 2 3 30 30 H 1.08999 * 109.47903 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47640 * 270.02652 * 8 7 6 32 32 H 1.09002 * 109.47285 * 30.03039 * 8 7 6 33 33 H 1.09004 * 109.46595 * 150.02687 * 8 7 6 34 34 H 0.96701 * 113.99678 * 90.00553 * 11 10 9 35 35 H 1.09000 * 111.00492 * 271.93544 * 16 14 13 36 36 H 1.08999 * 111.00686 * 35.79583 * 16 14 13 37 37 H 1.08997 * 110.36754 * 204.15391 * 17 16 14 38 38 H 1.09006 * 110.36595 * 81.82995 * 17 16 14 39 39 H 0.96999 * 120.00469 * 180.02562 * 22 21 19 40 40 H 1.09000 * 109.88250 * 239.51728 * 27 18 17 41 41 H 1.09005 * 109.88152 * 118.35657 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2001 0.0000 4 8 1.4022 2.2186 -0.0005 5 6 3.5411 1.2775 0.0006 6 7 4.2794 0.1651 0.0016 7 6 5.5915 0.2255 0.0026 8 6 6.3799 -1.0588 0.0044 9 7 6.2424 1.3743 0.0033 10 6 5.5920 2.5276 0.0024 11 8 6.2709 3.7010 0.0025 12 6 4.1880 2.5158 0.0069 13 8 3.4800 3.6734 0.0132 14 6 3.1370 4.2310 -1.2570 15 1 2.9898 3.4429 -1.9954 16 6 1.8731 5.1235 -1.1415 17 6 2.0761 6.1046 -2.3230 18 7 3.5280 6.3586 -2.3574 19 6 4.1318 7.4667 -2.8887 20 1 5.2076 7.5591 -2.8652 21 6 3.3613 8.4717 -3.4574 22 7 2.0502 8.3596 -3.4853 23 14 4.1850 9.9837 -4.1816 24 1 5.6573 9.8680 -4.0253 25 1 3.8476 10.0882 -5.6241 26 1 3.7052 11.1967 -3.4719 27 6 4.2200 5.2247 -1.7275 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 6.5688 -1.3679 1.0323 32 1 5.8123 -1.8344 -0.5098 33 1 7.3291 -0.9030 -0.5085 34 1 6.4685 4.0411 -0.8809 35 1 0.9655 4.5346 -1.2742 36 1 1.8561 5.6556 -0.1904 37 1 1.5329 7.0323 -2.1434 38 1 1.7488 5.6470 -3.2566 39 1 1.5117 9.0616 -3.8829 40 1 4.8001 5.5728 -0.8729 41 1 4.8762 4.7422 -2.4518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234563949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:50 Heat of formation + Delta-G solvation = -88.782218 kcal Electronic energy + Delta-G solvation = -28198.611420 eV Core-core repulsion = 24080.700846 eV Total energy + Delta-G solvation = -4117.910574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.92704 -41.31653 -40.35008 -38.86259 -38.15564 -37.50161 -34.88394 -34.34860 -33.14588 -31.24051 -29.50565 -29.23596 -28.54482 -26.74550 -26.33944 -24.33280 -22.68930 -22.18147 -22.00292 -20.34613 -20.11147 -19.18978 -19.08600 -18.31287 -17.95869 -17.72014 -17.06018 -16.85042 -16.31396 -16.09462 -15.76447 -15.18553 -15.08715 -14.67590 -14.44959 -14.39727 -14.21383 -13.95833 -13.53930 -13.36744 -13.31534 -13.11997 -13.02156 -12.90091 -12.74378 -12.47270 -12.29725 -12.09205 -12.00406 -11.96185 -11.87904 -11.83173 -11.55594 -11.46002 -10.79526 -10.46903 -10.33462 -8.96549 -7.80544 -5.26582 -1.15017 -0.67309 1.07113 1.17971 1.47967 1.48976 1.59184 1.85491 2.07400 2.33135 2.48728 2.55270 2.97868 3.31181 3.33851 3.56370 3.63994 3.69183 3.88798 3.96410 4.00802 4.27345 4.33078 4.49876 4.55439 4.62403 4.70418 4.76054 4.77286 4.79840 4.90168 4.95472 5.08091 5.22221 5.29546 5.43041 5.51976 5.71640 5.98043 6.22467 6.24979 6.37810 6.62301 7.05049 7.70818 8.34008 9.22301 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003809 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.561504 B = 7348.319235 C = 8828.680521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.336 6.336 3 C 0.516 3.484 4 O -0.481 6.481 5 C 0.130 3.870 6 N -0.469 5.469 7 C 0.329 3.671 8 C -0.081 4.081 9 N -0.509 5.509 10 C 0.361 3.639 11 O -0.464 6.464 12 C 0.023 3.977 13 O -0.299 6.299 14 C 0.103 3.897 15 H 0.069 0.931 16 C -0.111 4.111 17 C 0.157 3.843 18 N -0.621 5.621 19 C -0.240 4.240 20 H 0.088 0.912 21 C -0.065 4.065 22 N -0.950 5.950 23 Si 0.983 3.017 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.112 3.888 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.425 0.575 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.082 0.918 38 H -0.004 1.004 39 H 0.249 0.751 40 H 0.047 0.953 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -21.963 6.775 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.251 6.251 3 C 0.357 3.643 4 O -0.366 6.366 5 C -0.014 4.014 6 N -0.189 5.189 7 C 0.063 3.937 8 C -0.139 4.139 9 N -0.237 5.237 10 C 0.169 3.831 11 O -0.275 6.275 12 C -0.029 4.029 13 O -0.212 6.212 14 C 0.047 3.953 15 H 0.087 0.913 16 C -0.150 4.150 17 C 0.032 3.968 18 N -0.348 5.348 19 C -0.368 4.368 20 H 0.106 0.894 21 C -0.258 4.258 22 N -0.599 5.599 23 Si 0.811 3.189 24 H -0.188 1.188 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.013 4.013 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.289 0.711 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.014 0.986 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.754 -22.150 7.410 23.657 hybrid contribution -0.496 2.085 -1.040 2.383 sum 3.258 -20.065 6.370 21.303 Atomic orbital electron populations 1.23727 0.73534 1.06344 1.02990 1.86636 1.25501 1.30000 1.83011 1.20447 0.87094 0.82659 0.74103 1.90968 1.65502 1.36469 1.43705 1.21032 0.92727 0.88842 0.98821 1.68420 1.08266 1.29140 1.13096 1.24076 0.86342 0.94375 0.88889 1.20871 0.99250 0.87781 1.05995 1.67930 1.42812 0.98106 1.14818 1.19982 0.85861 0.86704 0.90574 1.84740 1.75558 1.31439 1.35740 1.20763 0.91291 0.87675 1.03170 1.86158 1.71033 1.34266 1.29751 1.23348 0.95817 0.93993 0.82104 0.91334 1.22861 0.95822 0.96560 0.99752 1.21758 0.85417 0.97399 0.92245 1.44633 1.02697 1.18618 1.68889 1.19523 0.92022 0.95030 1.30257 0.89435 1.25667 0.96261 1.01799 1.02035 1.70016 1.04464 1.34538 1.50886 0.84943 0.78114 0.78714 0.77121 1.18832 1.21897 1.21937 1.21947 0.94478 0.88842 0.96069 0.91458 0.91631 0.84173 0.87188 0.87415 0.87673 0.71148 0.89872 0.91574 0.90003 0.98558 0.94165 0.93487 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.34 -7.95 10.42 -56.06 -0.58 -8.54 16 3 C 0.52 14.99 7.96 70.40 0.56 15.55 16 4 O -0.48 -16.10 13.99 26.87 0.38 -15.72 16 5 C 0.13 3.77 6.79 41.82 0.28 4.06 16 6 N -0.47 -11.65 10.13 -177.16 -1.80 -13.44 16 7 C 0.33 7.07 7.64 138.81 1.06 8.13 16 8 C -0.08 -0.90 10.31 71.24 0.73 -0.17 16 9 N -0.51 -12.68 10.33 -300.42 -3.10 -15.78 16 10 C 0.36 10.21 7.86 85.14 0.67 10.87 16 11 O -0.46 -12.64 12.52 -77.02 -0.96 -13.60 16 12 C 0.02 0.71 5.71 23.16 0.13 0.85 16 13 O -0.30 -10.80 8.17 -63.70 -0.52 -11.32 16 14 C 0.10 3.88 2.67 31.78 0.08 3.96 16 15 H 0.07 2.49 7.97 -2.39 -0.02 2.47 16 16 C -0.11 -4.64 6.56 31.99 0.21 -4.43 16 17 C 0.16 7.93 5.89 86.86 0.51 8.44 16 18 N -0.62 -32.05 3.39 -691.96 -2.35 -34.39 16 19 C -0.24 -13.25 10.27 84.04 0.86 -12.39 16 20 H 0.09 4.56 7.83 -2.91 -0.02 4.53 16 21 C -0.07 -3.65 5.49 84.86 0.47 -3.19 16 22 N -0.95 -56.32 10.09 21.65 0.22 -56.10 16 23 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 27 C 0.11 4.58 5.95 86.73 0.52 5.10 16 28 H 0.07 1.07 8.14 -2.38 -0.02 1.06 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.42 8.84 7.99 -74.06 -0.59 8.24 16 35 H 0.08 3.21 7.97 -2.39 -0.02 3.20 16 36 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.08 4.69 5.87 -2.39 -0.01 4.67 16 38 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 39 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.05 1.91 7.26 -2.39 -0.02 1.89 16 41 H 0.04 1.34 8.04 -2.38 -0.02 1.32 16 Total: -1.00 -72.09 349.95 1.09 -71.00 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.49 Total: 12.32 kcal Atomic # 6 Polarization: 31.13 SS G_CDS: 7.29 Total: 38.42 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -7.03 Total: -119.73 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -1.69 Total: -49.18 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -72.09 1.09 -71.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234563949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.778 kcal (2) G-P(sol) polarization free energy of solvation -72.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds